diff --git a/Documentation/RelNotes-1.6.0.3.txt b/Documentation/RelNotes-1.6.0.3.txt
index ea1420d77a..6cf8ae4ea1 100644
--- a/Documentation/RelNotes-1.6.0.3.txt
+++ b/Documentation/RelNotes-1.6.0.3.txt
@@ -13,17 +13,83 @@ Fixes since v1.6.0.2
 * Continuing "git rebase -i" was also very confused when the user left
   some staged changes in the index after "edit".
 
+* "git rebase -i" now honors the pre-rebase hook, just like the
+  other rebase implementations "git rebase" and "git rebase -m".
+
 * Behaviour of "git diff --quiet" was inconsistent with "diff --exit-code"
   with the output redirected to /dev/null.
 
+* "git diff --no-index" on binary files no longer outputs a bogus
+  "diff --git" header line.
+
+* Hunk headers in "git diff" default to using extended regular
+  expressions, fixing some of the internal patterns on non-GNU
+  platforms.
+
+* New config "diff.*.xfuncname" exposes extended regular expressions
+  for user specified hunk header patterns.
+
+* "git stash apply sash@{1}" was fixed to error out.  Prior versions
+  would have applied stash@{0} incorrectly.
+
+* "git stash apply" now offers a better suggestion on how to continue
+  if the working tree is currently dirty.
+
+* "git for-each-ref --format=%(subject)" fixed for commits with no
+  no newline in the message body.
+
+* "git remote" fixed to protect printf from user input.
+
+* "git remote show -v" now displays all URLs of a remote.
+
+* "git checkout -q" once again suppresses the locally modified file list.
+
+* "git clone -q", "git fetch -q" asks remote side to not send
+  progress messages, actually making their output quiet.
+
+* Cross-directory renames are no longer used when creating packs.  This
+  allows more graceful behavior on filesystems like sshfs.
+
+* Stale temporary files under $GIT_DIR/objects/pack are now cleaned up
+  automatically by "git prune".
+
+* "git merge" once again removes directories after the last file has
+  been removed from it during the merge.
+
+* "git blame -C -C" no longer segfaults while trying to pass blame if
+   it encounters a submodule reference.
+
+* "git svn" fixed to display an error message when 'set-tree' failed,
+   instead of a Perl compile error.
+
+* "git submodule" fixed to handle checking out a different commit
+  than HEAD after initializing the submodule.
+
+* The "git commit" error message when there are still unmerged
+  files present was clarified to match "git write-tree".
+
+* Some segfaults due to uncaught NULL pointers were fixed in multiple
+  tools such as apply, reset, update-index.
+
+* Solaris builds now default to OLD_ICONV=1 to avoid compile warnings.
+
 * "Git.pm" tests relied on unnecessarily more recent version of Perl.
 
 * "gitweb" triggered undef warning on commits without log messages.
 
+* "gitweb" triggered undef warnings on missing trees.
+
+* "gitweb" now removes PATH_INFO from its URLs so users don't have
+  to manually set the URL in the gitweb configuration.
+
+* Bash completion removed support for legacy "git-fetch", "git-push"
+  and "git-pull" as these are no longer installed.  Dashless form
+  ("git fetch") is still however supported.
+
 Many other documentation updates.
 
 --
 exec >/var/tmp/1
-O=v1.6.0.2-32-g8d11fde
+O=v1.6.0.2-76-gd70b4a8
 echo O=$(git describe maint)
 git shortlog --no-merges $O..maint
diff --git a/Documentation/RelNotes-1.6.1.txt b/Documentation/RelNotes-1.6.1.txt
index 421e569ea0..906932cfa1 100644
--- a/Documentation/RelNotes-1.6.1.txt
+++ b/Documentation/RelNotes-1.6.1.txt
@@ -59,7 +59,7 @@ on.
 
 * "git daemon" learned --max-connections=<count> option.
 
-* "git diff" learned to mimick --suppress-blank-empty from GNU diff via a
+* "git diff" learned to mimic --suppress-blank-empty from GNU diff via a
   configuration option.
 
 * "git diff" learned to put more sensible hunk headers for Python and
@@ -121,7 +121,7 @@ release, unless otherwise noted.
   is a path in it).
 
 * "git diff --stdin" used to take two trees on a line and compared them,
-  but we droppped support for such a use case long time ago.  This has
+  but we dropped support for such a use case long time ago.  This has
   been resurrected.
 
 * "git filter-branch" failed to rewrite a tag name with slashes in it.
diff --git a/Documentation/config.txt b/Documentation/config.txt
index bea867df60..da18a5458e 100644
--- a/Documentation/config.txt
+++ b/Documentation/config.txt
@@ -117,6 +117,15 @@ core.fileMode::
 	the working copy are ignored; useful on broken filesystems like FAT.
 	See linkgit:git-update-index[1]. True by default.
 
+core.ignoreCygwinFSTricks::
+	This option is only used by Cygwin implementation of Git. If false,
+	the Cygwin stat() and lstat() functions are used. This may be useful
+	if your repository consists of a few separate directories joined in
+	one hierarchy using Cygwin mount. If true, Git uses native Win32 API
+	whenever it is possible and falls back to Cygwin functions only to
+	handle symbol links. The native mode is more than twice faster than
+	normal Cygwin l/stat() functions. True by default.
+
 core.trustctime::
 	If false, the ctime differences between the index and the
 	working copy are ignored; useful when the inode change time
@@ -363,8 +372,17 @@ core.pager::
 	variable.  Note that git sets the `LESS` environment
 	variable to `FRSX` if it is unset when it runs the
 	pager.  One can change these settings by setting the
-	`LESS` variable to some other value or by giving the
-	`core.pager` option a value such as "`less -+FRSX`".
+	`LESS` variable to some other value.  Alternately,
+	these settings can be overridden on a project or
+	global basis by setting the `core.pager` option.
+	Setting `core.pager` has no affect on the `LESS`
+	environment variable behaviour above, so if you want
+	to override git's default settings this way, you need
+	to be explicit.  For example, to disable the S option
+	in a backward compatible manner, set `core.pager`
+	to "`less -+$LESS -FRX`".  This will be passed to the
+	shell by git, which will translate the final command to
+	"`LESS=FRSX less -+FRSX -FRX`".
 
 core.whitespace::
 	A comma separated list of common whitespace problems to
@@ -918,6 +936,14 @@ man.<tool>.path::
 	Override the path for the given tool that may be used to
 	display help in the 'man' format. See linkgit:git-help[1].
 
+merge.conflictstyle::
+	Specify the style in which conflicted hunks are written out to
+	working tree files upon merge.  The default is "merge", which
+	shows `<<<<<<<` conflict marker, change made by one side,
+	`=======` marker, change made by the other side, and then
+	`>>>>>>>` marker.  An alternate style, "diff3", adds `|||||||`
+	marker and the original text before `=======` marker.
+
 mergetool.<tool>.path::
 	Override the path for the given tool.  This is useful in case
 	your tool is not in the PATH.
diff --git a/Documentation/diff-options.txt b/Documentation/diff-options.txt
index 6e268326da..7788d4fa4a 100644
--- a/Documentation/diff-options.txt
+++ b/Documentation/diff-options.txt
@@ -65,6 +65,9 @@ endif::git-format-patch[]
 	can be set with "--dirstat=limit". Changes in a child directory is not
 	counted for the parent directory, unless "--cumulative" is used.
 
+--dirstat-by-file[=limit]::
+	Same as --dirstat, but counts changed files instead of lines.
+
 --summary::
 	Output a condensed summary of extended header information
 	such as creations, renames and mode changes.
diff --git a/Documentation/git-apply.txt b/Documentation/git-apply.txt
index feb51f124a..e726510ab1 100644
--- a/Documentation/git-apply.txt
+++ b/Documentation/git-apply.txt
@@ -14,7 +14,8 @@ SYNOPSIS
 	  [--allow-binary-replacement | --binary] [--reject] [-z]
 	  [-pNUM] [-CNUM] [--inaccurate-eof] [--recount] [--cached]
 	  [--whitespace=<nowarn|warn|fix|error|error-all>]
-	  [--exclude=PATH] [--directory=<root>] [--verbose] [<patch>...]
+	  [--exclude=PATH] [--include=PATH] [--directory=<root>]
+	  [--verbose] [<patch>...]
 
 DESCRIPTION
 -----------
@@ -137,6 +138,17 @@ discouraged.
 	be useful when importing patchsets, where you want to exclude certain
 	files or directories.
 
+--include=<path-pattern>::
+	Apply changes to files matching the given path pattern. This can
+	be useful when importing patchsets, where you want to include certain
+	files or directories.
++
+When --exclude and --include patterns are used, they are examined in the
+order they appear on the command line, and the first match determines if a
+patch to each path is used.  A patch to a path that does not match any
+include/exclude pattern is used by default if there is no include pattern
+on the command line, and ignored if there is any include pattern.
+
 --whitespace=<action>::
 	When applying a patch, detect a new or modified line that has
 	whitespace errors.  What are considered whitespace errors is
diff --git a/Documentation/git-checkout.txt b/Documentation/git-checkout.txt
index be54a0299f..82e154de49 100644
--- a/Documentation/git-checkout.txt
+++ b/Documentation/git-checkout.txt
@@ -9,7 +9,7 @@ SYNOPSIS
 --------
 [verse]
 'git checkout' [-q] [-f] [--track | --no-track] [-b <new_branch> [-l]] [-m] [<branch>]
-'git checkout' [<tree-ish>] [--] <paths>...
+'git checkout' [-f|--ours|--theirs|-m|--conflict=<style>] [<tree-ish>] [--] <paths>...
 
 DESCRIPTION
 -----------
@@ -27,14 +27,20 @@ the first namespace level.
 
 When <paths> are given, this command does *not* switch
 branches.  It updates the named paths in the working tree from
-the index file (i.e. it runs `git checkout-index -f -u`), or
-from a named commit.  In
-this case, the `-f` and `-b` options are meaningless and giving
+the index file, or from a named commit.  In
+this case, the `-b` options is meaningless and giving
 either of them results in an error.  <tree-ish> argument can be
 used to specify a specific tree-ish (i.e. commit, tag or tree)
 to update the index for the given paths before updating the
 working tree.
 
+The index may contain unmerged entries after a failed merge.  By
+default, if you try to check out such an entry from the index, the
+checkout operation will fail and nothing will be checked out.
+Using -f will ignore these unmerged entries.  The contents from a
+specific side of the merge can be checked out of the index by
+using --ours or --theirs.  With -m, changes made to the working tree
+file can be discarded to recreate the original conflicted merge result.
 
 OPTIONS
 -------
@@ -42,8 +48,17 @@ OPTIONS
 	Quiet, suppress feedback messages.
 
 -f::
-	Proceed even if the index or the working tree differs
-	from HEAD.  This is used to throw away local changes.
+	When switching branches, proceed even if the index or the
+	working tree differs from HEAD.  This is used to throw away
+	local changes.
++
+When checking out paths from the index, do not fail upon unmerged
+entries; instead, unmerged entries are ignored.
+
+--ours::
+--theirs::
+	When checking out paths from the index, check out stage #2
+	('ours') or #3 ('theirs') for unmerged paths.
 
 -b::
 	Create a new branch named <new_branch> and start it at
@@ -84,7 +99,9 @@ exlicitly give a name with '-b' in such a case.
 	based sha1 expressions such as "<branchname>@\{yesterday}".
 
 -m::
-	If you have local modifications to one or more files that
+--merge::
+	When switching branches,
+	if you have local modifications to one or more files that
 	are different between the current branch and the branch to
 	which you are switching, the command refuses to switch
 	branches in order to preserve your modifications in context.
@@ -96,6 +113,16 @@ When a merge conflict happens, the index entries for conflicting
 paths are left unmerged, and you need to resolve the conflicts
 and mark the resolved paths with `git add` (or `git rm` if the merge
 should result in deletion of the path).
++
+When checking out paths from the index, this option lets you recreate
+the conflicted merge in the specified paths.
+
+--conflict=<style>::
+	The same as --merge option above, but changes the way the
+	conflicting hunks are presented, overriding the
+	merge.conflictstyle configuration variable.  Possible values are
+	"merge" (default) and "diff3" (in addition to what is shown by
+	"merge" style, shows the original contents).
 
 <new_branch>::
 	Name for the new branch.
diff --git a/Documentation/git-grep.txt b/Documentation/git-grep.txt
index fa4d133c1b..553da6cbb1 100644
--- a/Documentation/git-grep.txt
+++ b/Documentation/git-grep.txt
@@ -15,6 +15,7 @@ SYNOPSIS
 	   [-E | --extended-regexp] [-G | --basic-regexp]
 	   [-F | --fixed-strings] [-n]
 	   [-l | --files-with-matches] [-L | --files-without-match]
+	   [-z | --null]
 	   [-c | --count] [--all-match]
 	   [-A <post-context>] [-B <pre-context>] [-C <context>]
 	   [-f <file>] [-e] <pattern>
@@ -94,6 +95,11 @@ OPTIONS
 	For better compatibility with 'git-diff', --name-only is a
 	synonym for --files-with-matches.
 
+-z::
+--null::
+	Output \0 instead of the character that normally follows a
+	file name.
+
 -c::
 --count::
 	Instead of showing every matched line, show the number of
diff --git a/Documentation/git-log.txt b/Documentation/git-log.txt
index 0446bad7e5..93a2a227c4 100644
--- a/Documentation/git-log.txt
+++ b/Documentation/git-log.txt
@@ -8,7 +8,7 @@ git-log - Show commit logs
 
 SYNOPSIS
 --------
-'git log' <option>...
+'git log' [<options>] [<since>..<until>] [[\--] <path>...]
 
 DESCRIPTION
 -----------
@@ -57,8 +57,11 @@ include::diff-options.txt[]
 	Note that only message is considered, if also a diff is shown
 	its size is not included.
 
-<path>...::
-	Show only commits that affect any of the specified paths.
+[\--] <path>...::
+	Show only commits that affect any of the specified paths. To
+	prevent confusion with options and branch names, paths may need
+	to be prefixed with "\-- " to separate them from options or
+	refnames.
 
 
 include::rev-list-options.txt[]
diff --git a/Documentation/git-merge.txt b/Documentation/git-merge.txt
index 685e1fed58..1f30830d46 100644
--- a/Documentation/git-merge.txt
+++ b/Documentation/git-merge.txt
@@ -119,6 +119,71 @@ When there are conflicts, these things happen:
    same and the index entries for them stay as they were,
    i.e. matching `HEAD`.
 
+HOW CONFLICTS ARE PRESENTED
+---------------------------
+
+During a merge, the working tree files are updated to reflect the result
+of the merge.  Among the changes made to the common ancestor's version,
+non-overlapping ones (that is, you changed an area of the file while the
+other side left that area intact, or vice versa) are incorporated in the
+final result verbatim.  When both sides made changes to the same area,
+however, git cannot randomly pick one side over the other, and asks you to
+resolve it by leaving what both sides did to that area.
+
+By default, git uses the same style as that is used by "merge" program
+from the RCS suite to present such a conflicted hunk, like this:
+
+------------
+Here are lines that are either unchanged from the common
+ancestor, or cleanly resolved because only one side changed.
+<<<<<<< yours:sample.txt
+Conflict resolution is hard;
+let's go shopping.
+=======
+Git makes conflict resolution easy.
+>>>>>>> theirs:sample.txt
+And here is another line that is cleanly resolved or unmodified.
+------------
+
+The area a pair of conflicting changes happened is marked with markers
+"`<<<<<<<`", "`=======`", and "`>>>>>>>`".  The part before the "`=======`"
+is typically your side, and the part after it is typically their side.
+
+The default format does not show what the original said in the conflicted
+area.  You cannot tell how many lines are deleted and replaced with the
+Barbie's remark by your side.  The only thing you can tell is that your
+side wants to say it is hard and you'd prefer to go shopping, while the
+other side wants to claim it is easy.
+
+An alternative style can be used by setting the "merge.conflictstyle"
+configuration variable to "diff3".  In "diff3" style, the above conflict
+may look like this:
+
+------------
+Here are lines that are either unchanged from the common
+ancestor, or cleanly resolved because only one side changed.
+<<<<<<< yours:sample.txt
+Conflict resolution is hard;
+let's go shopping.
+|||||||
+Conflict resolution is hard.
+=======
+Git makes conflict resolution easy.
+>>>>>>> theirs:sample.txt
+And here is another line that is cleanly resolved or unmodified.
+------------
+
+In addition to the "`<<<<<<<`", "`=======`", and "`>>>>>>>`" markers, it uses
+another "`|||||||`" marker that is followed by the original text.  You can
+tell that the original just stated a fact, and your side simply gave in to
+that statement and gave up, while the other side tried to have a more
+positive attitude.  You can sometimes come up with a better resolution by
+viewing the original.
+
+
+HOW TO RESOLVE CONFLICTS
+------------------------
+
 After seeing a conflict, you can do two things:
 
  * Decide not to merge.  The only clean-up you need are to reset
diff --git a/Documentation/git-prune.txt b/Documentation/git-prune.txt
index 54f1dab38d..da6055d4b8 100644
--- a/Documentation/git-prune.txt
+++ b/Documentation/git-prune.txt
@@ -8,7 +8,7 @@ git-prune - Prune all unreachable objects from the object database
 
 SYNOPSIS
 --------
-'git-prune' [-n] [--expire <expire>] [--] [<head>...]
+'git-prune' [-n] [-v] [--expire <expire>] [--] [<head>...]
 
 DESCRIPTION
 -----------
@@ -34,6 +34,9 @@ OPTIONS
 	Do not remove anything; just report what it would
 	remove.
 
+-v::
+	Report all removed objects.
+
 \--::
 	Do not interpret any more arguments as options.
 
diff --git a/Documentation/git-push.txt b/Documentation/git-push.txt
index 45c96435fa..6150b1b959 100644
--- a/Documentation/git-push.txt
+++ b/Documentation/git-push.txt
@@ -9,8 +9,8 @@ git-push - Update remote refs along with associated objects
 SYNOPSIS
 --------
 [verse]
-'git push' [--all] [--dry-run] [--tags] [--receive-pack=<git-receive-pack>]
-	   [--repo=all] [-f | --force] [-v | --verbose]
+'git push' [--all | --mirror] [--dry-run] [--tags] [--receive-pack=<git-receive-pack>]
+	   [--repo=<repository>] [-f | --force] [-v | --verbose]
 	   [<repository> <refspec>...]
 
 DESCRIPTION
@@ -101,9 +101,23 @@ nor in any Push line of the corresponding remotes file---see below).
 	This flag disables the check.  This can cause the
 	remote repository to lose commits; use it with care.
 
---repo=<repo>::
-	When no repository is specified the command defaults to
-	"origin"; this overrides it.
+--repo=<repository>::
+	This option is only relevant if no <repository> argument is
+	passed in the invocation. In this case, 'git-push' derives the
+	remote name from the current branch: If it tracks a remote
+	branch, then that remote repository is pushed to. Otherwise,
+	the name "origin" is used. For this latter case, this option
+	can be used to override the name "origin". In other words,
+	the difference between these two commands
++
+--------------------------
+git push public         #1
+git push --repo=public  #2
+--------------------------
++
+is that #1 always pushes to "public" whereas #2 pushes to "public"
+only if the current branch does not track a remote branch. This is
+useful if you write an alias or script around 'git-push'.
 
 --thin::
 --no-thin::
diff --git a/Documentation/git-read-tree.txt b/Documentation/git-read-tree.txt
index 309deac23b..7160fa1536 100644
--- a/Documentation/git-read-tree.txt
+++ b/Documentation/git-read-tree.txt
@@ -212,7 +212,7 @@ output after two-tree merge.
 
 Case #3 is slightly tricky and needs explanation.  The result from this
 rule logically should be to remove the path if the user staged the removal
-of the path and then swiching to a new branch.  That however will prevent
+of the path and then switching to a new branch.  That however will prevent
 the initial checkout from happening, so the rule is modified to use M (new
 tree) only when the contents of the index is empty.  Otherwise the removal
 of the path is kept as long as $H and $M are the same.
diff --git a/Documentation/git-rebase.txt b/Documentation/git-rebase.txt
index 59c1b021a6..32f0f122e9 100644
--- a/Documentation/git-rebase.txt
+++ b/Documentation/git-rebase.txt
@@ -92,7 +92,7 @@ branch to another, to pretend that you forked the topic branch
 from the latter branch, using `rebase --onto`.
 
 First let's assume your 'topic' is based on branch 'next'.
-For example feature developed in 'topic' depends on some
+For example, a feature developed in 'topic' depends on some
 functionality which is found in 'next'.
 
 ------------
@@ -103,9 +103,9 @@ functionality which is found in 'next'.
                             o---o---o  topic
 ------------
 
-We would want to make 'topic' forked from branch 'master',
-for example because the functionality 'topic' branch depend on
-got merged into more stable 'master' branch, like this:
+We want to make 'topic' forked from branch 'master'; for example,
+because the functionality on which 'topic' depends was merged into the
+more stable 'master' branch. We want our tree to look like this:
 
 ------------
     o---o---o---o---o  master
diff --git a/Documentation/git-rev-list.txt b/Documentation/git-rev-list.txt
index fd1de92e34..1c9cc28895 100644
--- a/Documentation/git-rev-list.txt
+++ b/Documentation/git-rev-list.txt
@@ -32,9 +32,9 @@ SYNOPSIS
 	     [ \--cherry-pick ]
 	     [ \--encoding[=<encoding>] ]
 	     [ \--(author|committer|grep)=<pattern> ]
-	     [ \--regexp-ignore-case | \-i ]
-	     [ \--extended-regexp | \-E ]
-	     [ \--fixed-strings | \-F ]
+	     [ \--regexp-ignore-case | -i ]
+	     [ \--extended-regexp | -E ]
+	     [ \--fixed-strings | -F ]
 	     [ \--date={local|relative|default|iso|rfc|short} ]
 	     [ [\--objects | \--objects-edge] [ \--unpacked ] ]
 	     [ \--pretty | \--header ]
diff --git a/Documentation/git-send-email.txt b/Documentation/git-send-email.txt
index 3c3e1b0e77..82f505686e 100644
--- a/Documentation/git-send-email.txt
+++ b/Documentation/git-send-email.txt
@@ -11,7 +11,6 @@ SYNOPSIS
 'git send-email' [options] <file|directory> [... file|directory]
 
 
-
 DESCRIPTION
 -----------
 Takes the patches given on the command line and emails them out.
@@ -20,12 +19,16 @@ The header of the email is configurable by command line options.  If not
 specified on the command line, the user will be prompted with a ReadLine
 enabled interface to provide the necessary information.
 
+
 OPTIONS
 -------
-The options available are:
+
+Composing
+~~~~~~~~~
 
 --bcc::
-	Specify a "Bcc:" value for each email.
+	Specify a "Bcc:" value for each email. Default is the value of
+	'sendemail.bcc'.
 +
 The --bcc option must be repeated for each user you want on the bcc list.
 
@@ -34,22 +37,6 @@ The --bcc option must be repeated for each user you want on the bcc list.
 +
 The --cc option must be repeated for each user you want on the cc list.
 
---cc-cmd::
-	Specify a command to execute once per patch file which
-	should generate patch file specific "Cc:" entries.
-	Output of this command must be single email address per line.
-	Default is the value of 'sendemail.cccmd' configuration value.
-
---chain-reply-to::
---no-chain-reply-to::
-	If this is set, each email will be sent as a reply to the previous
-	email sent.  If disabled with "--no-chain-reply-to", all emails after
-	the first will be sent as replies to the first email sent.  When using
-	this, it is recommended that the first file given be an overview of the
-	entire patch series.
-	Default is the value of the 'sendemail.chainreplyto' configuration
-	value; if that is unspecified, default to --chain-reply-to.
-
 --compose::
 	Use $GIT_EDITOR, core.editor, $VISUAL, or $EDITOR to edit an
 	introductory message for the patch series.
@@ -66,22 +53,47 @@ The --cc option must be repeated for each user you want on the cc list.
 	Only necessary if --compose is also set.  If --compose
 	is not set, this will be prompted for.
 
---signed-off-by-cc::
---no-signed-off-by-cc::
-        If this is set, add emails found in Signed-off-by: or Cc: lines to the
-        cc list.
-        Default is the value of 'sendemail.signedoffcc' configuration value;
-        if that is unspecified, default to --signed-off-by-cc.
+--subject::
+	Specify the initial subject of the email thread.
+	Only necessary if --compose is also set.  If --compose
+	is not set, this will be prompted for.
 
---quiet::
-	Make git-send-email less verbose.  One line per email should be
-	all that is output.
+--to::
+	Specify the primary recipient of the emails generated. Generally, this
+	will be the upstream maintainer of the project involved. Default is the
+	value of the 'sendemail.to' configuration value; if that is unspecified,
+	this will be prompted for.
++
+The --to option must be repeated for each user you want on the to list.
 
---identity::
-	A configuration identity. When given, causes values in the
-	'sendemail.<identity>' subsection to take precedence over
-	values in the 'sendemail' section. The default identity is
-	the value of 'sendemail.identity'.
+
+Sending
+~~~~~~~
+
+--envelope-sender::
+	Specify the envelope sender used to send the emails.
+	This is useful if your default address is not the address that is
+	subscribed to a list. If you use the sendmail binary, you must have
+	suitable privileges for the -f parameter. Default is the value of
+	the 'sendemail.envelopesender' configuration variable; if that is
+	unspecified, choosing the envelope sender is left to your MTA.
+
+--smtp-encryption::
+	Specify the encryption to use, either 'ssl' or 'tls'.  Any other
+	value reverts to plain SMTP.  Default is the value of
+	'sendemail.smtpencryption'.
+
+--smtp-pass::
+	Password for SMTP-AUTH. The argument is optional: If no
+	argument is specified, then the empty string is used as
+	the password. Default is the value of 'sendemail.smtppass',
+	however '--smtp-pass' always overrides this value.
++
+Furthermore, passwords need not be specified in configuration files
+or on the command line. If a username has been specified (with
+'--smtp-user' or a 'sendemail.smtpuser'), but no password has been
+specified (with '--smtp-pass' or 'sendemail.smtppass'), then the
+user is prompted for a password while the input is masked for privacy.
 
 --smtp-server::
 	If set, specifies the outgoing SMTP server to use (e.g.
@@ -96,61 +108,44 @@ The --cc option must be repeated for each user you want on the cc list.
 --smtp-server-port::
 	Specifies a port different from the default port (SMTP
 	servers typically listen to smtp port 25 and ssmtp port
-	465).
-
---smtp-user::
-	Username for SMTP-AUTH. In place of this option, the following
-	configuration variables can be specified:
-+
---
-		* sendemail.smtpuser
-		* sendemail.<identity>.smtpuser (see sendemail.identity).
---
-+
-However, --smtp-user always overrides these variables.
-+
-If a username is not specified (with --smtp-user or a
-configuration variable), then authentication is not attempted.
-
---smtp-pass::
-	Password for SMTP-AUTH. The argument is optional: If no
-	argument is specified, then the empty string is used as
-	the password.
-+
-In place of this option, the following configuration variables
-can be specified:
-+
---
-		* sendemail.smtppass
-		* sendemail.<identity>.smtppass (see sendemail.identity).
---
-+
-However, --smtp-pass always overrides these variables.
-+
-Furthermore, passwords need not be specified in configuration files
-or on the command line. If a username has been specified (with
---smtp-user or a configuration variable), but no password has been
-specified (with --smtp-pass or a configuration variable), then the
-user is prompted for a password while the input is masked for privacy.
-
---smtp-encryption::
-	Specify the encryption to use, either 'ssl' or 'tls'.  Any other
-	value reverts to plain SMTP.  Default is the value of
-	'sendemail.smtpencryption'.
+	465). This can be set with 'sendemail.smtpserverport'.
 
 --smtp-ssl::
-	Legacy alias for '--smtp-encryption=ssl'.
+	Legacy alias for '--smtp-encryption ssl'.
 
---subject::
-	Specify the initial subject of the email thread.
-	Only necessary if --compose is also set.  If --compose
-	is not set, this will be prompted for.
+--smtp-user::
+	Username for SMTP-AUTH. Default is the value of 'sendemail.smtpuser';
+	if a username is not specified (with '--smtp-user' or 'sendemail.smtpuser'),
+	then authentication is not attempted.
 
---suppress-from::
---no-suppress-from::
-        If this is set, do not add the From: address to the cc: list.
-        Default is the value of 'sendemail.suppressfrom' configuration value;
-        if that is unspecified, default to --no-suppress-from.
+
+Automating
+~~~~~~~~~~
+
+--cc-cmd::
+	Specify a command to execute once per patch file which
+	should generate patch file specific "Cc:" entries.
+	Output of this command must be single email address per line.
+	Default is the value of 'sendemail.cccmd' configuration value.
+
+--[no-]chain-reply-to::
+	If this is set, each email will be sent as a reply to the previous
+	email sent.  If disabled with "--no-chain-reply-to", all emails after
+	the first will be sent as replies to the first email sent.  When using
+	this, it is recommended that the first file given be an overview of the
+	entire patch series. Default is the value of the 'sendemail.chainreplyto'
+	configuration value; if that is unspecified, default to --chain-reply-to.
+
+--identity::
+	A configuration identity. When given, causes values in the
+	'sendemail.<identity>' subsection to take precedence over
+	values in the 'sendemail' section. The default identity is
+	the value of 'sendemail.identity'.
+
+--[no-]signed-off-by-cc::
+	If this is set, add emails found in Signed-off-by: or Cc: lines to the
+	cc list. Default is the value of 'sendemail.signedoffbycc' configuration
+	value; if that is unspecified, default to --signed-off-by-cc.
 
 --suppress-cc::
 	Specify an additional category of recipients to suppress the
@@ -163,44 +158,43 @@ user is prompted for a password while the input is masked for privacy.
 	if that is unspecified, default to 'self' if --suppress-from is
 	specified, as well as 'sob' if --no-signed-off-cc is specified.
 
---thread::
---no-thread::
+--[no-]suppress-from::
+	If this is set, do not add the From: address to the cc: list.
+	Default is the value of 'sendemail.suppressfrom' configuration
+	value; if that is unspecified, default to --no-suppress-from.
+
+--[no-]thread::
 	If this is set, the In-Reply-To header will be set on each email sent.
 	If disabled with "--no-thread", no emails will have the In-Reply-To
-	header set.
-	Default is the value of the 'sendemail.thread' configuration value;
-	if that is unspecified, default to --thread.
+	header set. Default is the value of the 'sendemail.thread' configuration
+	value; if that is unspecified, default to --thread.
+
+
+Administering
+~~~~~~~~~~~~~
 
 --dry-run::
 	Do everything except actually send the emails.
 
---envelope-sender::
-	Specify the envelope sender used to send the emails.
-	This is useful if your default address is not the address that is
-	subscribed to a list. If you use the sendmail binary, you must have
-	suitable privileges for the -f parameter.
-	Default is the value of the 'sendemail.envelopesender' configuration
-	variable; if that is unspecified, choosing the envelope sender is left
-	to your MTA.
+--quiet::
+	Make git-send-email less verbose.  One line per email should be
+	all that is output.
 
---to::
-	Specify the primary recipient of the emails generated.
-	Generally, this will be the upstream maintainer of the
-	project involved.
-	Default is the value of the 'sendemail.to' configuration value;
-	if that is unspecified, this will be prompted for.
+--[no-]validate::
+	Perform sanity checks on patches.
+	Currently, validation means the following:
 +
-The --to option must be repeated for each user you want on the to list.
+--
+		*	Warn of patches that contain lines longer than 998 characters; this
+			is due to SMTP limits as described by http://www.ietf.org/rfc/rfc2821.txt.
+--
++
+Default is the value of 'sendemail.validate'; if this is not set,
+default to '--validate'.
 
 
 CONFIGURATION
 -------------
-sendemail.identity::
-	The default configuration identity. When specified,
-	'sendemail.<identity>.<item>' will have higher precedence than
-	'sendemail.<item>'. This is useful to declare multiple SMTP
-	identities and to hoist sensitive authentication information
-	out of the repository and into the global configuration file.
 
 sendemail.aliasesfile::
 	To avoid typing long email addresses, point this to one or more
@@ -210,38 +204,6 @@ sendemail.aliasfiletype::
 	Format of the file(s) specified in sendemail.aliasesfile. Must be
 	one of 'mutt', 'mailrc', 'pine', or 'gnus'.
 
-sendemail.to::
-	Email address (or alias) to always send to.
-
-sendemail.cccmd::
-	Command to execute to generate per patch file specific "Cc:"s.
-
-sendemail.bcc::
-	Email address (or alias) to always bcc.
-
-sendemail.chainreplyto::
-	Boolean value specifying the default to the '--chain_reply_to'
-	parameter.
-
-sendemail.smtpserver::
-	Default SMTP server to use.
-
-sendemail.smtpserverport::
-	Default SMTP server port to use.
-
-sendemail.smtpuser::
-	Default SMTP-AUTH username.
-
-sendemail.smtppass::
-	Default SMTP-AUTH password.
-
-sendemail.smtpencryption::
-	Default encryption method.  Use 'ssl' for SSL (and specify an
-	appropriate port), or 'tls' for TLS.  Takes precedence over
-	'smtpssl' if both are specified.
-
-sendemail.smtpssl::
-	Legacy boolean that sets 'smtpencryption=ssl' if enabled.
 
 Author
 ------
@@ -250,10 +212,12 @@ Written by Ryan Anderson <ryan@michonline.com>
 git-send-email is originally based upon
 send_lots_of_email.pl by Greg Kroah-Hartman.
 
+
 Documentation
 --------------
 Documentation by Ryan Anderson
 
+
 GIT
 ---
 Part of the linkgit:git[1] suite
diff --git a/Documentation/git-svn.txt b/Documentation/git-svn.txt
index 1e644ca6dc..84c8f3cde0 100644
--- a/Documentation/git-svn.txt
+++ b/Documentation/git-svn.txt
@@ -149,6 +149,22 @@ and have no uncommitted changes.
 	is very strongly discouraged.
 --
 
+'branch'::
+	Create a branch in the SVN repository.
+
+-m;;
+--message;;
+	Allows to specify the commit message.
+
+-t;;
+--tag;;
+	Create a tag by using the tags_subdir instead of the branches_subdir
+	specified during git svn init.
+
+'tag'::
+	Create a tag in the SVN repository. This is a shorthand for
+	'branch -t'.
+
 'log'::
 	This should make it easy to look up svn log messages when svn
 	users refer to -r/--revision numbers.
@@ -372,7 +388,8 @@ Passed directly to 'git-rebase' when using 'dcommit' if a
 -n::
 --dry-run::
 
-This can be used with the 'dcommit' and 'rebase' commands.
+This can be used with the 'dcommit', 'rebase', 'branch' and 'tag'
+commands.
 
 For 'dcommit', print out the series of git arguments that would show
 which diffs would be committed to SVN.
@@ -381,6 +398,9 @@ For 'rebase', display the local branch associated with the upstream svn
 repository associated with the current branch and the URL of svn
 repository that will be fetched from.
 
+For 'branch' and 'tag', display the urls that will be used for copying when
+creating the branch or tag.
+
 --
 
 ADVANCED OPTIONS
@@ -473,7 +493,7 @@ Tracking and contributing to the trunk of a Subversion-managed project:
 
 ------------------------------------------------------------------------
 # Clone a repo (like git clone):
-	git svn clone http://svn.foo.org/project/trunk
+	git svn clone http://svn.example.com/project/trunk
 # Enter the newly cloned directory:
 	cd trunk
 # You should be on master branch, double-check with git-branch
@@ -495,9 +515,11 @@ Tracking and contributing to an entire Subversion-managed project
 
 ------------------------------------------------------------------------
 # Clone a repo (like git clone):
-	git svn clone http://svn.foo.org/project -T trunk -b branches -t tags
+	git svn clone http://svn.example.com/project -T trunk -b branches -t tags
 # View all branches and tags you have cloned:
 	git branch -r
+# Create a new branch in SVN
+    git svn branch waldo
 # Reset your master to trunk (or any other branch, replacing 'trunk'
 # with the appropriate name):
 	git reset --hard remotes/trunk
@@ -514,7 +536,7 @@ have each person clone that repository with 'git-clone':
 
 ------------------------------------------------------------------------
 # Do the initial import on a server
-	ssh server "cd /pub && git svn clone http://svn.foo.org/project
+	ssh server "cd /pub && git svn clone http://svn.example.com/project
 # Clone locally - make sure the refs/remotes/ space matches the server
 	mkdir project
 	cd project
@@ -523,7 +545,7 @@ have each person clone that repository with 'git-clone':
 	git config --add remote.origin.fetch '+refs/remotes/*:refs/remotes/*'
 	git fetch
 # Initialize git-svn locally (be sure to use the same URL and -T/-b/-t options as were used on server)
-	git svn init http://svn.foo.org/project
+	git svn init http://svn.example.com/project
 # Pull the latest changes from Subversion
 	git svn rebase
 ------------------------------------------------------------------------
diff --git a/Documentation/git-web--browse.txt b/Documentation/git-web--browse.txt
index 7f7a45b2ea..278cf73527 100644
--- a/Documentation/git-web--browse.txt
+++ b/Documentation/git-web--browse.txt
@@ -26,6 +26,7 @@ The following browsers (or commands) are currently supported:
 * lynx
 * dillo
 * open (this is the default under Mac OS X GUI)
+* start (this is the default under MinGW)
 
 Custom commands may also be specified.
 
diff --git a/Documentation/gitattributes.txt b/Documentation/gitattributes.txt
index e848c94397..26945593cb 100644
--- a/Documentation/gitattributes.txt
+++ b/Documentation/gitattributes.txt
@@ -288,13 +288,13 @@ for paths.
 *.tex	diff=tex
 ------------------------
 
-Then, you would define a "diff.tex.funcname" configuration to
+Then, you would define a "diff.tex.xfuncname" configuration to
 specify a regular expression that matches a line that you would
 want to appear as the hunk header "TEXT", like this:
 
 ------------------------
 [diff "tex"]
-	funcname = "^\\(\\\\\\(sub\\)*section{.*\\)$"
+	xfuncname = "^(\\\\(sub)*section\\{.*)$"
 ------------------------
 
 Note.  A single level of backslashes are eaten by the
@@ -315,6 +315,8 @@ patterns are available:
 
 - `java` suitable for source code in the Java language.
 
+- `objc` suitable for source code in the Objective-C language.
+
 - `pascal` suitable for source code in the Pascal/Delphi language.
 
 - `php` suitable for source code in the PHP language.
diff --git a/Documentation/githooks.txt b/Documentation/githooks.txt
index 046a2a7fe7..5faaaa5fed 100644
--- a/Documentation/githooks.txt
+++ b/Documentation/githooks.txt
@@ -87,12 +87,12 @@ default log message, and before the editor is started.
 
 It takes one to three parameters.  The first is the name of the file
 that the commit log message.  The second is the source of the commit
-message, and can be: `message` (if a `\-m` or `\-F` option was
-given); `template` (if a `\-t` option was given or the
+message, and can be: `message` (if a `-m` or `-F` option was
+given); `template` (if a `-t` option was given or the
 configuration option `commit.template` is set); `merge` (if the
 commit is a merge or a `.git/MERGE_MSG` file exists); `squash`
 (if a `.git/SQUASH_MSG` file exists); or `commit`, followed by
-a commit SHA1 (if a `\-c`, `\-C` or `\--amend` option was given).
+a commit SHA1 (if a `-c`, `-C` or `\--amend` option was given).
 
 If the exit status is non-zero, 'git-commit' will abort.
 
@@ -130,6 +130,13 @@ parameter, and is invoked after a commit is made.
 This hook is meant primarily for notification, and cannot affect
 the outcome of 'git-commit'.
 
+pre-rebase
+----------
+
+This hook is called by 'git-rebase' and can be used to prevent a branch
+from getting rebased.
+
+
 post-checkout
 -----------
 
diff --git a/Documentation/technical/api-run-command.txt b/Documentation/technical/api-run-command.txt
index 75aa5d4923..82e9e831b6 100644
--- a/Documentation/technical/api-run-command.txt
+++ b/Documentation/technical/api-run-command.txt
@@ -30,7 +30,7 @@ Functions
 	start_command() followed by finish_command(). Takes a pointer
 	to a `struct child_process` that specifies the details.
 
-`run_command_v_opt`, `run_command_v_opt_cd`, `run_command_v_opt_cd_env`::
+`run_command_v_opt`, `run_command_v_opt_cd_env`::
 
 	Convenience functions that encapsulate a sequence of
 	start_command() followed by finish_command(). The argument argv
diff --git a/Makefile b/Makefile
index 3c0664a073..308dc70b5d 100644
--- a/Makefile
+++ b/Makefile
@@ -294,7 +294,6 @@ PROGRAMS += git-mktag$X
 PROGRAMS += git-mktree$X
 PROGRAMS += git-pack-redundant$X
 PROGRAMS += git-patch-id$X
-PROGRAMS += git-receive-pack$X
 PROGRAMS += git-send-pack$X
 PROGRAMS += git-shell$X
 PROGRAMS += git-show-index$X
@@ -347,6 +346,7 @@ LIB_H += cache.h
 LIB_H += cache-tree.h
 LIB_H += commit.h
 LIB_H += compat/mingw.h
+LIB_H += compat/cygwin.h
 LIB_H += csum-file.h
 LIB_H += decorate.h
 LIB_H += delta.h
@@ -444,6 +444,7 @@ LIB_OBJS += log-tree.o
 LIB_OBJS += mailmap.o
 LIB_OBJS += match-trees.o
 LIB_OBJS += merge-file.o
+LIB_OBJS += merge-recursive.o
 LIB_OBJS += name-hash.o
 LIB_OBJS += object.o
 LIB_OBJS += pack-check.o
@@ -546,6 +547,7 @@ BUILTIN_OBJS += builtin-prune-packed.o
 BUILTIN_OBJS += builtin-prune.o
 BUILTIN_OBJS += builtin-push.o
 BUILTIN_OBJS += builtin-read-tree.o
+BUILTIN_OBJS += builtin-receive-pack.o
 BUILTIN_OBJS += builtin-reflog.o
 BUILTIN_OBJS += builtin-remote.o
 BUILTIN_OBJS += builtin-rerere.o
@@ -647,8 +649,8 @@ ifeq ($(uname_S),SunOS)
 	NO_MEMMEM = YesPlease
 	NO_HSTRERROR = YesPlease
 	NO_MKDTEMP = YesPlease
+	OLD_ICONV = UnfortunatelyYes
 	ifeq ($(uname_R),5.8)
-		NEEDS_LIBICONV = YesPlease
 		NO_UNSETENV = YesPlease
 		NO_SETENV = YesPlease
 		NO_C99_FORMAT = YesPlease
@@ -747,6 +749,9 @@ ifeq ($(uname_S),HP-UX)
 	NO_SYS_SELECT_H = YesPlease
 	SNPRINTF_RETURNS_BOGUS = YesPlease
 endif
+ifneq (,$(findstring CYGWIN,$(uname_S)))
+	COMPAT_OBJS += compat/cygwin.o
+endif
 ifneq (,$(findstring MINGW,$(uname_S)))
 	NO_MMAP = YesPlease
 	NO_PREAD = YesPlease
diff --git a/abspath.c b/abspath.c
index 0d561246e0..8194ce1256 100644
--- a/abspath.c
+++ b/abspath.c
@@ -1,5 +1,16 @@
 #include "cache.h"
 
+/*
+ * Do not use this for inspecting *tracked* content.  When path is a
+ * symlink to a directory, we do not want to say it is a directory when
+ * dealing with tracked content in the working tree.
+ */
+int is_directory(const char *path)
+{
+	struct stat st;
+	return (!stat(path, &st) && S_ISDIR(st.st_mode));
+}
+
 /* We allow "recursive" symbolic links. Only within reason, though. */
 #define MAXDEPTH 5
 
@@ -17,7 +28,7 @@ const char *make_absolute_path(const char *path)
 		die ("Too long path: %.*s", 60, path);
 
 	while (depth--) {
-		if (stat(buf, &st) || !S_ISDIR(st.st_mode)) {
+		if (!is_directory(buf)) {
 			char *last_slash = strrchr(buf, '/');
 			if (last_slash) {
 				*last_slash = '\0';
diff --git a/archive.c b/archive.c
index e2280df567..44ab008039 100644
--- a/archive.c
+++ b/archive.c
@@ -15,7 +15,7 @@ static char const * const archive_usage[] = {
 
 #define USES_ZLIB_COMPRESSION 1
 
-const struct archiver {
+static const struct archiver {
 	const char *name;
 	write_archive_fn_t write_archive;
 	unsigned int flags;
diff --git a/arm/sha1.c b/arm/sha1.c
index 9e3ae038e8..c61ad4aff9 100644
--- a/arm/sha1.c
+++ b/arm/sha1.c
@@ -8,9 +8,9 @@
 #include <string.h>
 #include "sha1.h"
 
-extern void sha_transform(uint32_t *hash, const unsigned char *data, uint32_t *W);
+extern void arm_sha_transform(uint32_t *hash, const unsigned char *data, uint32_t *W);
 
-void SHA1_Init(SHA_CTX *c)
+void arm_SHA1_Init(arm_SHA_CTX *c)
 {
 	c->len = 0;
 	c->hash[0] = 0x67452301;
@@ -20,7 +20,7 @@ void SHA1_Init(SHA_CTX *c)
 	c->hash[4] = 0xc3d2e1f0;
 }
 
-void SHA1_Update(SHA_CTX *c, const void *p, unsigned long n)
+void arm_SHA1_Update(arm_SHA_CTX *c, const void *p, unsigned long n)
 {
 	uint32_t workspace[80];
 	unsigned int partial;
@@ -32,12 +32,12 @@ void SHA1_Update(SHA_CTX *c, const void *p, unsigned long n)
 		if (partial) {
 			done = 64 - partial;
 			memcpy(c->buffer + partial, p, done);
-			sha_transform(c->hash, c->buffer, workspace);
+			arm_sha_transform(c->hash, c->buffer, workspace);
 			partial = 0;
 		} else
 			done = 0;
 		while (n >= done + 64) {
-			sha_transform(c->hash, p + done, workspace);
+			arm_sha_transform(c->hash, p + done, workspace);
 			done += 64;
 		}
 	} else
@@ -46,7 +46,7 @@ void SHA1_Update(SHA_CTX *c, const void *p, unsigned long n)
 		memcpy(c->buffer + partial, p + done, n - done);
 }
 
-void SHA1_Final(unsigned char *hash, SHA_CTX *c)
+void arm_SHA1_Final(unsigned char *hash, arm_SHA_CTX *c)
 {
 	uint64_t bitlen;
 	uint32_t bitlen_hi, bitlen_lo;
@@ -57,7 +57,7 @@ void SHA1_Final(unsigned char *hash, SHA_CTX *c)
 	bitlen = c->len << 3;
 	offset = c->len & 0x3f;
 	padlen = ((offset < 56) ? 56 : (64 + 56)) - offset;
-	SHA1_Update(c, padding, padlen);
+	arm_SHA1_Update(c, padding, padlen);
 
 	bitlen_hi = bitlen >> 32;
 	bitlen_lo = bitlen & 0xffffffff;
@@ -69,7 +69,7 @@ void SHA1_Final(unsigned char *hash, SHA_CTX *c)
 	bits[5] = bitlen_lo >> 16;
 	bits[6] = bitlen_lo >> 8;
 	bits[7] = bitlen_lo;
-	SHA1_Update(c, bits, 8);
+	arm_SHA1_Update(c, bits, 8);
 
 	for (i = 0; i < 5; i++) {
 		uint32_t v = c->hash[i];
diff --git a/arm/sha1.h b/arm/sha1.h
index 3952646349..b61b618486 100644
--- a/arm/sha1.h
+++ b/arm/sha1.h
@@ -7,12 +7,17 @@
 
 #include <stdint.h>
 
-typedef struct sha_context {
+typedef struct {
 	uint64_t len;
 	uint32_t hash[5];
 	unsigned char buffer[64];
-} SHA_CTX;
+} arm_SHA_CTX;
 
-void SHA1_Init(SHA_CTX *c);
-void SHA1_Update(SHA_CTX *c, const void *p, unsigned long n);
-void SHA1_Final(unsigned char *hash, SHA_CTX *c);
+void arm_SHA1_Init(arm_SHA_CTX *c);
+void arm_SHA1_Update(arm_SHA_CTX *c, const void *p, unsigned long n);
+void arm_SHA1_Final(unsigned char *hash, arm_SHA_CTX *c);
+
+#define git_SHA_CTX	arm_SHA_CTX
+#define git_SHA1_Init	arm_SHA1_Init
+#define git_SHA1_Update	arm_SHA1_Update
+#define git_SHA1_Final	arm_SHA1_Final
diff --git a/arm/sha1_arm.S b/arm/sha1_arm.S
index 8c1cb99fb4..41e92636e0 100644
--- a/arm/sha1_arm.S
+++ b/arm/sha1_arm.S
@@ -10,7 +10,7 @@
  */
 
 	.text
-	.globl	sha_transform
+	.globl	arm_sha_transform
 
 /*
  * void sha_transform(uint32_t *hash, const unsigned char *data, uint32_t *W);
@@ -18,7 +18,7 @@
  * note: the "data" pointer may be unaligned.
  */
 
-sha_transform:
+arm_sha_transform:
 
 	stmfd	sp!, {r4 - r8, lr}
 
diff --git a/builtin-add.c b/builtin-add.c
index 7c874e3115..ea4e77169a 100644
--- a/builtin-add.c
+++ b/builtin-add.c
@@ -166,7 +166,7 @@ static const char ignore_error[] =
 "The following paths are ignored by one of your .gitignore files:\n";
 
 static int verbose = 0, show_only = 0, ignored_too = 0, refresh_only = 0;
-static int ignore_add_errors, addremove;
+static int ignore_add_errors, addremove, intent_to_add;
 
 static struct option builtin_add_options[] = {
 	OPT__DRY_RUN(&show_only),
@@ -176,6 +176,7 @@ static struct option builtin_add_options[] = {
 	OPT_BOOLEAN('p', "patch", &patch_interactive, "interactive patching"),
 	OPT_BOOLEAN('f', "force", &ignored_too, "allow adding otherwise ignored files"),
 	OPT_BOOLEAN('u', "update", &take_worktree_changes, "update tracked files"),
+	OPT_BOOLEAN('N', "intent-to-add", &intent_to_add, "record only the fact that the path will be added later"),
 	OPT_BOOLEAN('A', "all", &addremove, "add all, noticing removal of tracked files"),
 	OPT_BOOLEAN( 0 , "refresh", &refresh_only, "don't add, only refresh the index"),
 	OPT_BOOLEAN( 0 , "ignore-errors", &ignore_add_errors, "just skip files which cannot be added because of errors"),
@@ -246,6 +247,7 @@ int cmd_add(int argc, const char **argv, const char *prefix)
 
 	flags = ((verbose ? ADD_CACHE_VERBOSE : 0) |
 		 (show_only ? ADD_CACHE_PRETEND : 0) |
+		 (intent_to_add ? ADD_CACHE_INTENT : 0) |
 		 (ignore_add_errors ? ADD_CACHE_IGNORE_ERRORS : 0) |
 		 (!(addremove || take_worktree_changes)
 		  ? ADD_CACHE_IGNORE_REMOVAL : 0));
diff --git a/builtin-apply.c b/builtin-apply.c
index 20bef1f21d..bf80610506 100644
--- a/builtin-apply.c
+++ b/builtin-apply.c
@@ -13,6 +13,7 @@
 #include "delta.h"
 #include "builtin.h"
 #include "string-list.h"
+#include "dir.h"
 
 /*
  *  --check turns on checking that the working tree matches the
@@ -1696,7 +1697,7 @@ static int match_fragment(struct image *img,
 		fixlen = ws_fix_copy(buf, orig, oldlen, ws_rule, NULL);
 
 		/* Try fixing the line in the target */
-		if (sizeof(tgtfixbuf) < tgtlen)
+		if (sizeof(tgtfixbuf) > tgtlen)
 			tgtfix = tgtfixbuf;
 		else
 			tgtfix = xmalloc(tgtlen);
@@ -2585,6 +2586,8 @@ static void build_fake_ancestor(struct patch *list, const char *filename)
 			sha1_ptr = sha1;
 
 		ce = make_cache_entry(patch->old_mode, sha1_ptr, name, 0, 0);
+		if (!ce)
+			die("make_cache_entry failed for path '%s'", name);
 		if (add_index_entry(&result, ce, ADD_CACHE_OK_TO_ADD))
 			die ("Could not add %s to temporary index", name);
 	}
@@ -2735,15 +2738,7 @@ static void remove_file(struct patch *patch, int rmdir_empty)
 				warning("unable to remove submodule %s",
 					patch->old_name);
 		} else if (!unlink(patch->old_name) && rmdir_empty) {
-			char *name = xstrdup(patch->old_name);
-			char *end = strrchr(name, '/');
-			while (end) {
-				*end = 0;
-				if (rmdir(name))
-					break;
-				end = strrchr(name, '/');
-			}
-			free(name);
+			remove_path(patch->old_name);
 		}
 	}
 }
@@ -2994,29 +2989,45 @@ static int write_out_results(struct patch *list, int skipped_patch)
 
 static struct lock_file lock_file;
 
-static struct excludes {
-	struct excludes *next;
-	const char *path;
-} *excludes;
+static struct string_list limit_by_name;
+static int has_include;
+static void add_name_limit(const char *name, int exclude)
+{
+	struct string_list_item *it;
+
+	it = string_list_append(name, &limit_by_name);
+	it->util = exclude ? NULL : (void *) 1;
+}
 
 static int use_patch(struct patch *p)
 {
 	const char *pathname = p->new_name ? p->new_name : p->old_name;
-	struct excludes *x = excludes;
-	while (x) {
-		if (fnmatch(x->path, pathname, 0) == 0)
-			return 0;
-		x = x->next;
-	}
+	int i;
+
+	/* Paths outside are not touched regardless of "--include" */
 	if (0 < prefix_length) {
 		int pathlen = strlen(pathname);
 		if (pathlen <= prefix_length ||
 		    memcmp(prefix, pathname, prefix_length))
 			return 0;
 	}
-	return 1;
+
+	/* See if it matches any of exclude/include rule */
+	for (i = 0; i < limit_by_name.nr; i++) {
+		struct string_list_item *it = &limit_by_name.items[i];
+		if (!fnmatch(it->string, pathname, 0))
+			return (it->util != NULL);
+	}
+
+	/*
+	 * If we had any include, a path that does not match any rule is
+	 * not used.  Otherwise, we saw bunch of exclude rules (or none)
+	 * and such a path is used.
+	 */
+	return !has_include;
 }
 
+
 static void prefix_one(char **name)
 {
 	char *old_name = *name;
@@ -3157,10 +3168,12 @@ int cmd_apply(int argc, const char **argv, const char *unused_prefix)
 			continue;
 		}
 		if (!prefixcmp(arg, "--exclude=")) {
-			struct excludes *x = xmalloc(sizeof(*x));
-			x->path = arg + 10;
-			x->next = excludes;
-			excludes = x;
+			add_name_limit(arg + 10, 1);
+			continue;
+		}
+		if (!prefixcmp(arg, "--include=")) {
+			add_name_limit(arg + 10, 0);
+			has_include = 1;
 			continue;
 		}
 		if (!prefixcmp(arg, "-p")) {
diff --git a/builtin-blame.c b/builtin-blame.c
index 6b7b9f4466..df537593d0 100644
--- a/builtin-blame.c
+++ b/builtin-blame.c
@@ -1132,6 +1132,8 @@ static int find_copy_in_parent(struct scoreboard *sb,
 
 			if (!DIFF_FILE_VALID(p->one))
 				continue; /* does not exist in parent */
+			if (S_ISGITLINK(p->one->mode))
+				continue; /* ignore git links */
 			if (porigin && !strcmp(p->one->path, porigin->path))
 				/* find_move already dealt with this path */
 				continue;
diff --git a/builtin-checkout.c b/builtin-checkout.c
index 4497b7092d..3762f71aae 100644
--- a/builtin-checkout.c
+++ b/builtin-checkout.c
@@ -13,6 +13,9 @@
 #include "diff.h"
 #include "revision.h"
 #include "remote.h"
+#include "blob.h"
+#include "xdiff-interface.h"
+#include "ll-merge.h"
 
 static const char * const checkout_usage[] = {
 	"git checkout [options] <branch>",
@@ -20,6 +23,18 @@ static const char * const checkout_usage[] = {
 	NULL,
 };
 
+struct checkout_opts {
+	int quiet;
+	int merge;
+	int force;
+	int writeout_stage;
+	int writeout_error;
+
+	const char *new_branch;
+	int new_branch_log;
+	enum branch_track track;
+};
+
 static int post_checkout_hook(struct commit *old, struct commit *new,
 			      int changed)
 {
@@ -84,8 +99,121 @@ static int skip_same_name(struct cache_entry *ce, int pos)
 	return pos;
 }
 
+static int check_stage(int stage, struct cache_entry *ce, int pos)
+{
+	while (pos < active_nr &&
+	       !strcmp(active_cache[pos]->name, ce->name)) {
+		if (ce_stage(active_cache[pos]) == stage)
+			return 0;
+		pos++;
+	}
+	return error("path '%s' does not have %s version",
+		     ce->name,
+		     (stage == 2) ? "our" : "their");
+}
 
-static int checkout_paths(struct tree *source_tree, const char **pathspec)
+static int check_all_stages(struct cache_entry *ce, int pos)
+{
+	if (ce_stage(ce) != 1 ||
+	    active_nr <= pos + 2 ||
+	    strcmp(active_cache[pos+1]->name, ce->name) ||
+	    ce_stage(active_cache[pos+1]) != 2 ||
+	    strcmp(active_cache[pos+2]->name, ce->name) ||
+	    ce_stage(active_cache[pos+2]) != 3)
+		return error("path '%s' does not have all three versions",
+			     ce->name);
+	return 0;
+}
+
+static int checkout_stage(int stage, struct cache_entry *ce, int pos,
+			  struct checkout *state)
+{
+	while (pos < active_nr &&
+	       !strcmp(active_cache[pos]->name, ce->name)) {
+		if (ce_stage(active_cache[pos]) == stage)
+			return checkout_entry(active_cache[pos], state, NULL);
+		pos++;
+	}
+	return error("path '%s' does not have %s version",
+		     ce->name,
+		     (stage == 2) ? "our" : "their");
+}
+
+/* NEEDSWORK: share with merge-recursive */
+static void fill_mm(const unsigned char *sha1, mmfile_t *mm)
+{
+	unsigned long size;
+	enum object_type type;
+
+	if (!hashcmp(sha1, null_sha1)) {
+		mm->ptr = xstrdup("");
+		mm->size = 0;
+		return;
+	}
+
+	mm->ptr = read_sha1_file(sha1, &type, &size);
+	if (!mm->ptr || type != OBJ_BLOB)
+		die("unable to read blob object %s", sha1_to_hex(sha1));
+	mm->size = size;
+}
+
+static int checkout_merged(int pos, struct checkout *state)
+{
+	struct cache_entry *ce = active_cache[pos];
+	const char *path = ce->name;
+	mmfile_t ancestor, ours, theirs;
+	int status;
+	unsigned char sha1[20];
+	mmbuffer_t result_buf;
+
+	if (ce_stage(ce) != 1 ||
+	    active_nr <= pos + 2 ||
+	    strcmp(active_cache[pos+1]->name, path) ||
+	    ce_stage(active_cache[pos+1]) != 2 ||
+	    strcmp(active_cache[pos+2]->name, path) ||
+	    ce_stage(active_cache[pos+2]) != 3)
+		return error("path '%s' does not have all 3 versions", path);
+
+	fill_mm(active_cache[pos]->sha1, &ancestor);
+	fill_mm(active_cache[pos+1]->sha1, &ours);
+	fill_mm(active_cache[pos+2]->sha1, &theirs);
+
+	status = ll_merge(&result_buf, path, &ancestor,
+			  &ours, "ours", &theirs, "theirs", 1);
+	free(ancestor.ptr);
+	free(ours.ptr);
+	free(theirs.ptr);
+	if (status < 0 || !result_buf.ptr) {
+		free(result_buf.ptr);
+		return error("path '%s': cannot merge", path);
+	}
+
+	/*
+	 * NEEDSWORK:
+	 * There is absolutely no reason to write this as a blob object
+	 * and create a phoney cache entry just to leak.  This hack is
+	 * primarily to get to the write_entry() machinery that massages
+	 * the contents to work-tree format and writes out which only
+	 * allows it for a cache entry.  The code in write_entry() needs
+	 * to be refactored to allow us to feed a <buffer, size, mode>
+	 * instead of a cache entry.  Such a refactoring would help
+	 * merge_recursive as well (it also writes the merge result to the
+	 * object database even when it may contain conflicts).
+	 */
+	if (write_sha1_file(result_buf.ptr, result_buf.size,
+			    blob_type, sha1))
+		die("Unable to add merge result for '%s'", path);
+	ce = make_cache_entry(create_ce_mode(active_cache[pos+1]->ce_mode),
+			      sha1,
+			      path, 2, 0);
+	if (!ce)
+		die("make_cache_entry failed for path '%s'", path);
+	status = checkout_entry(ce, state, NULL);
+	return status;
+}
+
+static int checkout_paths(struct tree *source_tree, const char **pathspec,
+			  struct checkout_opts *opts)
 {
 	int pos;
 	struct checkout state;
@@ -94,7 +222,8 @@ static int checkout_paths(struct tree *source_tree, const char **pathspec)
 	int flag;
 	struct commit *head;
 	int errs = 0;
-
+	int stage = opts->writeout_stage;
+	int merge = opts->merge;
 	int newfd;
 	struct lock_file *lock_file = xcalloc(1, sizeof(struct lock_file));
 
@@ -122,8 +251,16 @@ static int checkout_paths(struct tree *source_tree, const char **pathspec)
 		if (pathspec_match(pathspec, NULL, ce->name, 0)) {
 			if (!ce_stage(ce))
 				continue;
-			errs = 1;
-			error("path '%s' is unmerged", ce->name);
+			if (opts->force) {
+				warning("path '%s' is unmerged", ce->name);
+			} else if (stage) {
+				errs |= check_stage(stage, ce, pos);
+			} else if (opts->merge) {
+				errs |= check_all_stages(ce, pos);
+			} else {
+				errs = 1;
+				error("path '%s' is unmerged", ce->name);
+			}
 			pos = skip_same_name(ce, pos) - 1;
 		}
 	}
@@ -141,6 +278,10 @@ static int checkout_paths(struct tree *source_tree, const char **pathspec)
 				errs |= checkout_entry(ce, &state, NULL);
 				continue;
 			}
+			if (stage)
+				errs |= checkout_stage(stage, ce, pos, &state);
+			else if (merge)
+				errs |= checkout_merged(pos, &state);
 			pos = skip_same_name(ce, pos) - 1;
 		}
 	}
@@ -178,17 +319,6 @@ static void describe_detached_head(char *msg, struct commit *commit)
 	strbuf_release(&sb);
 }
 
-struct checkout_opts {
-	int quiet;
-	int merge;
-	int force;
-	int writeout_error;
-
-	const char *new_branch;
-	int new_branch_log;
-	enum branch_track track;
-};
-
 static int reset_tree(struct tree *tree, struct checkout_opts *o, int worktree)
 {
 	struct unpack_trees_options opts;
@@ -293,6 +423,7 @@ static int merge_working_tree(struct checkout_opts *opts,
 			 */
 			struct tree *result;
 			struct tree *work;
+			struct merge_options o;
 			if (!opts->merge)
 				return 1;
 			parse_commit(old->commit);
@@ -311,13 +442,17 @@ static int merge_working_tree(struct checkout_opts *opts,
 			 */
 
 			add_files_to_cache(NULL, NULL, 0);
-			work = write_tree_from_memory();
+			init_merge_options(&o);
+			o.verbosity = 0;
+			work = write_tree_from_memory(&o);
 
 			ret = reset_tree(new->commit->tree, opts, 1);
 			if (ret)
 				return ret;
-			merge_trees(new->commit->tree, work, old->commit->tree,
-				    new->name, "local", &result);
+			o.branch1 = new->name;
+			o.branch2 = "local";
+			merge_trees(&o, new->commit->tree, work,
+				old->commit->tree, &result);
 			ret = reset_tree(new->commit->tree, opts, 0);
 			if (ret)
 				return ret;
@@ -328,7 +463,7 @@ static int merge_working_tree(struct checkout_opts *opts,
 	    commit_locked_index(lock_file))
 		die("unable to write new index file");
 
-	if (!opts->force)
+	if (!opts->force && !opts->quiet)
 		show_local_changes(&new->commit->object);
 
 	return 0;
@@ -440,6 +575,11 @@ static int switch_branches(struct checkout_opts *opts, struct branch_info *new)
 	return ret || opts->writeout_error;
 }
 
+static int git_checkout_config(const char *var, const char *value, void *cb)
+{
+	return git_xmerge_config(var, value, cb);
+}
+
 int cmd_checkout(int argc, const char **argv, const char *prefix)
 {
 	struct checkout_opts opts;
@@ -447,14 +587,21 @@ int cmd_checkout(int argc, const char **argv, const char *prefix)
 	const char *arg;
 	struct branch_info new;
 	struct tree *source_tree = NULL;
+	char *conflict_style = NULL;
 	struct option options[] = {
 		OPT__QUIET(&opts.quiet),
 		OPT_STRING('b', NULL, &opts.new_branch, "new branch", "branch"),
 		OPT_BOOLEAN('l', NULL, &opts.new_branch_log, "log for new branch"),
 		OPT_SET_INT('t', "track",  &opts.track, "track",
 			BRANCH_TRACK_EXPLICIT),
+		OPT_SET_INT('2', "ours", &opts.writeout_stage, "stage",
+			    2),
+		OPT_SET_INT('3', "theirs", &opts.writeout_stage, "stage",
+			    3),
 		OPT_BOOLEAN('f', NULL, &opts.force, "force"),
-		OPT_BOOLEAN('m', NULL, &opts.merge, "merge"),
+		OPT_BOOLEAN('m', "merge", &opts.merge, "merge"),
+		OPT_STRING(0, "conflict", &conflict_style, "style",
+			   "conflict style (merge or diff3)"),
 		OPT_END(),
 	};
 	int has_dash_dash;
@@ -462,7 +609,7 @@ int cmd_checkout(int argc, const char **argv, const char *prefix)
 	memset(&opts, 0, sizeof(opts));
 	memset(&new, 0, sizeof(new));
 
-	git_config(git_default_config, NULL);
+	git_config(git_checkout_config, NULL);
 
 	opts.track = BRANCH_TRACK_UNSPECIFIED;
 
@@ -486,6 +633,13 @@ int cmd_checkout(int argc, const char **argv, const char *prefix)
 
 	if (opts.track == BRANCH_TRACK_UNSPECIFIED)
 		opts.track = git_branch_track;
+	if (conflict_style) {
+		opts.merge = 1; /* implied */
+		git_xmerge_config("merge.conflictstyle", conflict_style, NULL);
+	}
+
+	if (!opts.new_branch && (opts.track != git_branch_track))
+		die("git checkout: --track and --no-track require -b");
 
 	if (opts.force && opts.merge)
 		die("git checkout: -f and -m are incompatible");
@@ -569,15 +723,18 @@ no_reference:
 			die("invalid path specification");
 
 		/* Checkout paths */
-		if (opts.new_branch || opts.force || opts.merge) {
+		if (opts.new_branch) {
 			if (argc == 1) {
-				die("git checkout: updating paths is incompatible with switching branches/forcing\nDid you intend to checkout '%s' which can not be resolved as commit?", argv[0]);
+				die("git checkout: updating paths is incompatible with switching branches.\nDid you intend to checkout '%s' which can not be resolved as commit?", argv[0]);
 			} else {
-				die("git checkout: updating paths is incompatible with switching branches/forcing");
+				die("git checkout: updating paths is incompatible with switching branches.");
 			}
 		}
 
-		return checkout_paths(source_tree, pathspec);
+		if (1 < !!opts.writeout_stage + !!opts.force + !!opts.merge)
+			die("git checkout: --ours/--theirs, --force and --merge are incompatible when\nchecking out of the index.");
+
+		return checkout_paths(source_tree, pathspec, &opts);
 	}
 
 	if (opts.new_branch) {
@@ -595,6 +752,8 @@ no_reference:
 	if (new.name && !new.commit) {
 		die("Cannot switch branch to a non-commit.");
 	}
+	if (opts.writeout_stage)
+		die("--ours/--theirs is incompatible with switching branches.");
 
 	return switch_branches(&opts, &new);
 }
diff --git a/builtin-clone.c b/builtin-clone.c
index 5b40e07ba7..49d2eb9c2b 100644
--- a/builtin-clone.c
+++ b/builtin-clone.c
@@ -77,7 +77,7 @@ static char *get_repo_path(const char *repo, int *is_bundle)
 	for (i = 0; i < ARRAY_SIZE(suffix); i++) {
 		const char *path;
 		path = mkpath("%s%s", repo, suffix[i]);
-		if (!stat(path, &st) && S_ISDIR(st.st_mode)) {
+		if (is_directory(path)) {
 			*is_bundle = 0;
 			return xstrdup(make_nonrelative_path(path));
 		}
@@ -140,13 +140,6 @@ static char *guess_dir_name(const char *repo, int is_bundle, int is_bare)
 	return xstrndup(start, end - start);
 }
 
-static int is_directory(const char *path)
-{
-	struct stat buf;
-
-	return !stat(path, &buf) && S_ISDIR(buf.st_mode);
-}
-
 static void strip_trailing_slashes(char *dir)
 {
 	char *end = dir + strlen(dir);
diff --git a/builtin-commit-tree.c b/builtin-commit-tree.c
index f2684bb75e..0453425c47 100644
--- a/builtin-commit-tree.c
+++ b/builtin-commit-tree.c
@@ -46,7 +46,8 @@ static const char commit_utf8_warn[] =
 "variable i18n.commitencoding to the encoding your project uses.\n";
 
 int commit_tree(const char *msg, unsigned char *tree,
-		struct commit_list *parents, unsigned char *ret)
+		struct commit_list *parents, unsigned char *ret,
+		const char *author)
 {
 	int result;
 	int encoding_is_utf8;
@@ -74,7 +75,9 @@ int commit_tree(const char *msg, unsigned char *tree,
 	}
 
 	/* Person/date information */
-	strbuf_addf(&buffer, "author %s\n", git_author_info(IDENT_ERROR_ON_NO_NAME));
+	if (!author)
+		author = git_author_info(IDENT_ERROR_ON_NO_NAME);
+	strbuf_addf(&buffer, "author %s\n", author);
 	strbuf_addf(&buffer, "committer %s\n", git_committer_info(IDENT_ERROR_ON_NO_NAME));
 	if (!encoding_is_utf8)
 		strbuf_addf(&buffer, "encoding %s\n", git_commit_encoding);
@@ -123,7 +126,7 @@ int cmd_commit_tree(int argc, const char **argv, const char *prefix)
 	if (strbuf_read(&buffer, 0, 0) < 0)
 		die("git commit-tree: read returned %s", strerror(errno));
 
-	if (!commit_tree(buffer.buf, tree_sha1, parents, commit_sha1)) {
+	if (!commit_tree(buffer.buf, tree_sha1, parents, commit_sha1, NULL)) {
 		printf("%s\n", sha1_to_hex(commit_sha1));
 		return 0;
 	}
diff --git a/builtin-commit.c b/builtin-commit.c
index 8165bb3d31..b920257524 100644
--- a/builtin-commit.c
+++ b/builtin-commit.c
@@ -639,7 +639,7 @@ static int prepare_to_commit(const char *index_file, const char *prefix)
 		active_cache_tree = cache_tree();
 	if (cache_tree_update(active_cache_tree,
 			      active_cache, active_nr, 0, 0) < 0) {
-		error("Error building trees");
+		error("Error building trees; the index is unmerged?");
 		return 0;
 	}
 
@@ -667,14 +667,14 @@ static int prepare_to_commit(const char *index_file, const char *prefix)
 }
 
 /*
- * Find out if the message starting at position 'start' in the strbuf
- * contains only whitespace and Signed-off-by lines.
+ * Find out if the message in the strbuf contains only whitespace and
+ * Signed-off-by lines.
  */
-static int message_is_empty(struct strbuf *sb, int start)
+static int message_is_empty(struct strbuf *sb)
 {
 	struct strbuf tmpl;
 	const char *nl;
-	int eol, i;
+	int eol, i, start = 0;
 
 	if (cleanup_mode == CLEANUP_NONE && sb->len)
 		return 0;
@@ -929,34 +929,14 @@ static const char commit_utf8_warn[] =
 "You may want to amend it after fixing the message, or set the config\n"
 "variable i18n.commitencoding to the encoding your project uses.\n";
 
-static void add_parent(struct strbuf *sb, const unsigned char *sha1)
-{
-	struct object *obj = parse_object(sha1);
-	const char *parent = sha1_to_hex(sha1);
-	const char *cp;
-
-	if (!obj)
-		die("Unable to find commit parent %s", parent);
-	if (obj->type != OBJ_COMMIT)
-		die("Parent %s isn't a proper commit", parent);
-
-	for (cp = sb->buf; cp && (cp = strstr(cp, "\nparent ")); cp += 8) {
-		if (!memcmp(cp + 8, parent, 40) && cp[48] == '\n') {
-			error("duplicate parent %s ignored", parent);
-			return;
-		}
-	}
-	strbuf_addf(sb, "parent %s\n", parent);
-}
-
 int cmd_commit(int argc, const char **argv, const char *prefix)
 {
-	int header_len;
 	struct strbuf sb;
 	const char *index_file, *reflog_msg;
 	char *nl, *p;
 	unsigned char commit_sha1[20];
 	struct ref_lock *ref_lock;
+	struct commit_list *parents = NULL, **pptr = &parents;
 
 	git_config(git_commit_config, NULL);
 
@@ -971,13 +951,6 @@ int cmd_commit(int argc, const char **argv, const char *prefix)
 		return 1;
 	}
 
-	/*
-	 * The commit object
-	 */
-	strbuf_init(&sb, 0);
-	strbuf_addf(&sb, "tree %s\n",
-		    sha1_to_hex(active_cache_tree->sha1));
-
 	/* Determine parents */
 	if (initial_commit) {
 		reflog_msg = "commit (initial)";
@@ -991,13 +964,13 @@ int cmd_commit(int argc, const char **argv, const char *prefix)
 			die("could not parse HEAD commit");
 
 		for (c = commit->parents; c; c = c->next)
-			add_parent(&sb, c->item->object.sha1);
+			pptr = &commit_list_insert(c->item, pptr)->next;
 	} else if (in_merge) {
 		struct strbuf m;
 		FILE *fp;
 
 		reflog_msg = "commit (merge)";
-		add_parent(&sb, head_sha1);
+		pptr = &commit_list_insert(lookup_commit(head_sha1), pptr)->next;
 		strbuf_init(&m, 0);
 		fp = fopen(git_path("MERGE_HEAD"), "r");
 		if (fp == NULL)
@@ -1007,24 +980,18 @@ int cmd_commit(int argc, const char **argv, const char *prefix)
 			unsigned char sha1[20];
 			if (get_sha1_hex(m.buf, sha1) < 0)
 				die("Corrupt MERGE_HEAD file (%s)", m.buf);
-			add_parent(&sb, sha1);
+			pptr = &commit_list_insert(lookup_commit(sha1), pptr)->next;
 		}
 		fclose(fp);
 		strbuf_release(&m);
 	} else {
 		reflog_msg = "commit";
-		strbuf_addf(&sb, "parent %s\n", sha1_to_hex(head_sha1));
+		pptr = &commit_list_insert(lookup_commit(head_sha1), pptr)->next;
 	}
-
-	strbuf_addf(&sb, "author %s\n",
-		    fmt_ident(author_name, author_email, author_date, IDENT_ERROR_ON_NO_NAME));
-	strbuf_addf(&sb, "committer %s\n", git_committer_info(IDENT_ERROR_ON_NO_NAME));
-	if (!is_encoding_utf8(git_commit_encoding))
-		strbuf_addf(&sb, "encoding %s\n", git_commit_encoding);
-	strbuf_addch(&sb, '\n');
+	parents = reduce_heads(parents);
 
 	/* Finally, get the commit message */
-	header_len = sb.len;
+	strbuf_init(&sb, 0);
 	if (strbuf_read_file(&sb, git_path(commit_editmsg), 0) < 0) {
 		rollback_index_files();
 		die("could not read commit message");
@@ -1037,16 +1004,15 @@ int cmd_commit(int argc, const char **argv, const char *prefix)
 
 	if (cleanup_mode != CLEANUP_NONE)
 		stripspace(&sb, cleanup_mode == CLEANUP_ALL);
-	if (sb.len < header_len || message_is_empty(&sb, header_len)) {
+	if (message_is_empty(&sb)) {
 		rollback_index_files();
 		fprintf(stderr, "Aborting commit due to empty commit message.\n");
 		exit(1);
 	}
-	strbuf_addch(&sb, '\0');
-	if (is_encoding_utf8(git_commit_encoding) && !is_utf8(sb.buf))
-		fprintf(stderr, commit_utf8_warn);
 
-	if (write_sha1_file(sb.buf, sb.len - 1, commit_type, commit_sha1)) {
+	if (commit_tree(sb.buf, active_cache_tree->sha1, parents, commit_sha1,
+			fmt_ident(author_name, author_email, author_date,
+				IDENT_ERROR_ON_NO_NAME))) {
 		rollback_index_files();
 		die("failed to write commit object");
 	}
@@ -1055,12 +1021,11 @@ int cmd_commit(int argc, const char **argv, const char *prefix)
 					   initial_commit ? NULL : head_sha1,
 					   0);
 
-	nl = strchr(sb.buf + header_len, '\n');
+	nl = strchr(sb.buf, '\n');
 	if (nl)
 		strbuf_setlen(&sb, nl + 1 - sb.buf);
 	else
 		strbuf_addch(&sb, '\n');
-	strbuf_remove(&sb, 0, header_len);
 	strbuf_insert(&sb, 0, reflog_msg, strlen(reflog_msg));
 	strbuf_insert(&sb, strlen(reflog_msg), ": ", 2);
 
diff --git a/builtin-fetch-pack.c b/builtin-fetch-pack.c
index 4dfef29bcd..fa3c936493 100644
--- a/builtin-fetch-pack.c
+++ b/builtin-fetch-pack.c
@@ -735,7 +735,7 @@ int cmd_fetch_pack(int argc, const char **argv, const char *prefix)
 	conn = git_connect(fd, (char *)dest, args.uploadpack,
 			   args.verbose ? CONNECT_VERBOSE : 0);
 	if (conn) {
-		get_remote_heads(fd[0], &ref, 0, NULL, 0);
+		get_remote_heads(fd[0], &ref, 0, NULL, 0, NULL);
 
 		ref = fetch_pack(&args, fd, conn, ref, dest, nr_heads, heads, NULL);
 		close(fd[0]);
diff --git a/builtin-fmt-merge-msg.c b/builtin-fmt-merge-msg.c
index df02ba7afd..c6324dc795 100644
--- a/builtin-fmt-merge-msg.c
+++ b/builtin-fmt-merge-msg.c
@@ -5,8 +5,10 @@
 #include "revision.h"
 #include "tag.h"
 
-static const char *fmt_merge_msg_usage =
-	"git fmt-merge-msg [--log] [--no-log] [--file <file>]";
+static const char * const fmt_merge_msg_usage[] = {
+	"git fmt-merge-msg [--log|--no-log] [--file <file>]",
+	NULL
+};
 
 static int merge_summary;
 
@@ -347,38 +349,29 @@ int fmt_merge_msg(int merge_summary, struct strbuf *in, struct strbuf *out) {
 
 int cmd_fmt_merge_msg(int argc, const char **argv, const char *prefix)
 {
+	const char *inpath = NULL;
+	struct option options[] = {
+		OPT_BOOLEAN(0, "log",     &merge_summary, "populate log with the shortlog"),
+		OPT_BOOLEAN(0, "summary", &merge_summary, "alias for --log"),
+		OPT_STRING('F', "file",   &inpath, "file", "file to read from"),
+		OPT_END()
+	};
+
 	FILE *in = stdin;
 	struct strbuf input, output;
 	int ret;
 
 	git_config(fmt_merge_msg_config, NULL);
+	argc = parse_options(argc, argv, options, fmt_merge_msg_usage, 0);
+	if (argc > 0)
+		usage_with_options(fmt_merge_msg_usage, options);
 
-	while (argc > 1) {
-		if (!strcmp(argv[1], "--log") || !strcmp(argv[1], "--summary"))
-			merge_summary = 1;
-		else if (!strcmp(argv[1], "--no-log")
-				|| !strcmp(argv[1], "--no-summary"))
-			merge_summary = 0;
-		else if (!strcmp(argv[1], "-F") || !strcmp(argv[1], "--file")) {
-			if (argc < 3)
-				die ("Which file?");
-			if (!strcmp(argv[2], "-"))
-				in = stdin;
-			else {
-				fclose(in);
-				in = fopen(argv[2], "r");
-				if (!in)
-					die("cannot open %s", argv[2]);
-			}
-			argc--; argv++;
-		} else
-			break;
-		argc--; argv++;
+	if (inpath && strcmp(inpath, "-")) {
+		in = fopen(inpath, "r");
+		if (!in)
+			die("cannot open %s", inpath);
 	}
 
-	if (argc > 1)
-		usage(fmt_merge_msg_usage);
-
 	strbuf_init(&input, 0);
 	if (strbuf_read(&input, fileno(in), 0) < 0)
 		die("could not read input file %s", strerror(errno));
@@ -387,6 +380,6 @@ int cmd_fmt_merge_msg(int argc, const char **argv, const char *prefix)
 	ret = fmt_merge_msg(merge_summary, &input, &output);
 	if (ret)
 		return ret;
-	printf("%s", output.buf);
+	write_in_full(STDOUT_FILENO, output.buf, output.len);
 	return 0;
 }
diff --git a/builtin-for-each-ref.c b/builtin-for-each-ref.c
index 9b44092671..fa6c1ed752 100644
--- a/builtin-for-each-ref.c
+++ b/builtin-for-each-ref.c
@@ -320,9 +320,7 @@ static const char *find_wholine(const char *who, int wholen, const char *buf, un
 
 static const char *copy_line(const char *buf)
 {
-	const char *eol = strchr(buf, '\n');
-	if (!eol)
-		return "";
+	const char *eol = strchrnul(buf, '\n');
 	return xmemdupz(buf, eol - buf);
 }
 
diff --git a/builtin-gc.c b/builtin-gc.c
index fac200e0b0..7af65bb31b 100644
--- a/builtin-gc.c
+++ b/builtin-gc.c
@@ -26,7 +26,7 @@ static int pack_refs = 1;
 static int aggressive_window = -1;
 static int gc_auto_threshold = 6700;
 static int gc_auto_pack_limit = 50;
-static char *prune_expire = "2.weeks.ago";
+static const char *prune_expire = "2.weeks.ago";
 
 #define MAX_ADD 10
 static const char *argv_pack_refs[] = {"pack-refs", "--all", "--prune", NULL};
@@ -57,15 +57,12 @@ static int gc_config(const char *var, const char *value, void *cb)
 		return 0;
 	}
 	if (!strcmp(var, "gc.pruneexpire")) {
-		if (!value)
-			return config_error_nonbool(var);
-		if (strcmp(value, "now")) {
+		if (value && strcmp(value, "now")) {
 			unsigned long now = approxidate("now");
 			if (approxidate(value) >= now)
 				return error("Invalid %s: '%s'", var, value);
 		}
-		prune_expire = xstrdup(value);
-		return 0;
+		return git_config_string(&prune_expire, var, value);
 	}
 	return git_default_config(var, value, cb);
 }
diff --git a/builtin-grep.c b/builtin-grep.c
index 3a51662a35..624f86e287 100644
--- a/builtin-grep.c
+++ b/builtin-grep.c
@@ -295,6 +295,9 @@ static int external_grep(struct grep_opt *opt, const char **paths, int cached)
 		push_arg("-l");
 	if (opt->unmatch_name_only)
 		push_arg("-L");
+	if (opt->null_following_name)
+		/* in GNU grep git's "-z" translates to "-Z" */
+		push_arg("-Z");
 	if (opt->count)
 		push_arg("-c");
 	if (opt->post_context || opt->pre_context) {
@@ -599,6 +602,11 @@ int cmd_grep(int argc, const char **argv, const char *prefix)
 			opt.unmatch_name_only = 1;
 			continue;
 		}
+		if (!strcmp("-z", arg) ||
+		    !strcmp("--null", arg)) {
+			opt.null_following_name = 1;
+			continue;
+		}
 		if (!strcmp("-c", arg) ||
 		    !strcmp("--count", arg)) {
 			opt.count = 1;
diff --git a/builtin-init-db.c b/builtin-init-db.c
index 8140c1299a..d30c3fe2ca 100644
--- a/builtin-init-db.c
+++ b/builtin-init-db.c
@@ -17,6 +17,9 @@
 #define TEST_FILEMODE 1
 #endif
 
+static int init_is_bare_repository = 0;
+static int init_shared_repository = -1;
+
 static void safe_create_dir(const char *dir, int share)
 {
 	if (mkdir(dir, 0777) < 0) {
@@ -191,6 +194,9 @@ static int create_default_files(const char *template_path)
 	copy_templates(template_path);
 
 	git_config(git_default_config, NULL);
+	is_bare_repository_cfg = init_is_bare_repository;
+	if (init_shared_repository != -1)
+		shared_repository = init_shared_repository;
 
 	/*
 	 * We would have created the above under user's umask -- under
@@ -277,6 +283,8 @@ int init_db(const char *template_dir, unsigned int flags)
 
 	safe_create_dir(get_git_dir(), 0);
 
+	init_is_bare_repository = is_bare_repository();
+
 	/* Check to see if the repository version is right.
 	 * Note that a newly created repository does not have
 	 * config file, so this will not fail.  What we are catching
@@ -381,9 +389,9 @@ int cmd_init_db(int argc, const char **argv, const char *prefix)
 			setenv(GIT_DIR_ENVIRONMENT, getcwd(git_dir,
 						sizeof(git_dir)), 0);
 		} else if (!strcmp(arg, "--shared"))
-			shared_repository = PERM_GROUP;
+			init_shared_repository = PERM_GROUP;
 		else if (!prefixcmp(arg, "--shared="))
-			shared_repository = git_config_perm("arg", arg+9);
+			init_shared_repository = git_config_perm("arg", arg+9);
 		else if (!strcmp(arg, "-q") || !strcmp(arg, "--quiet"))
 			flags |= INIT_DB_QUIET;
 		else
diff --git a/builtin-merge-base.c b/builtin-merge-base.c
index b08da516e4..03fc1c2114 100644
--- a/builtin-merge-base.c
+++ b/builtin-merge-base.c
@@ -1,6 +1,7 @@
 #include "builtin.h"
 #include "cache.h"
 #include "commit.h"
+#include "parse-options.h"
 
 static int show_merge_base(struct commit **rev, int rev_nr, int show_all)
 {
@@ -21,8 +22,10 @@ static int show_merge_base(struct commit **rev, int rev_nr, int show_all)
 	return 0;
 }
 
-static const char merge_base_usage[] =
-"git merge-base [--all] <commit-id> <commit-id>...";
+static const char * const merge_base_usage[] = {
+	"git merge-base [--all] <commit-id> <commit-id>...",
+	NULL
+};
 
 static struct commit *get_commit_reference(const char *arg)
 {
@@ -44,25 +47,17 @@ int cmd_merge_base(int argc, const char **argv, const char *prefix)
 	int rev_nr = 0;
 	int show_all = 0;
 
+	struct option options[] = {
+		OPT_BOOLEAN('a', "all", &show_all, "outputs all common ancestors"),
+		OPT_END()
+	};
+
 	git_config(git_default_config, NULL);
-
-	while (1 < argc && argv[1][0] == '-') {
-		const char *arg = argv[1];
-		if (!strcmp(arg, "-a") || !strcmp(arg, "--all"))
-			show_all = 1;
-		else
-			usage(merge_base_usage);
-		argc--; argv++;
-	}
-	if (argc < 3)
-		usage(merge_base_usage);
-
-	rev = xmalloc((argc - 1) * sizeof(*rev));
-
-	do {
-		rev[rev_nr++] = get_commit_reference(argv[1]);
-		argc--; argv++;
-	} while (argc > 1);
-
+	argc = parse_options(argc, argv, options, merge_base_usage, 0);
+	if (argc < 2)
+		usage_with_options(merge_base_usage, options);
+	rev = xmalloc(argc * sizeof(*rev));
+	while (argc-- > 0)
+		rev[rev_nr++] = get_commit_reference(*argv++);
 	return show_merge_base(rev, rev_nr, show_all);
 }
diff --git a/builtin-merge-file.c b/builtin-merge-file.c
index 3605960c2d..9d4e874809 100644
--- a/builtin-merge-file.c
+++ b/builtin-merge-file.c
@@ -2,57 +2,76 @@
 #include "cache.h"
 #include "xdiff/xdiff.h"
 #include "xdiff-interface.h"
+#include "parse-options.h"
 
-static const char merge_file_usage[] =
-"git merge-file [-p | --stdout] [-q | --quiet] [-L name1 [-L orig [-L name2]]] file1 orig_file file2";
+static const char *const merge_file_usage[] = {
+	"git merge-file [options] [-L name1 [-L orig [-L name2]]] file1 orig_file file2",
+	NULL
+};
+
+static int label_cb(const struct option *opt, const char *arg, int unset)
+{
+	static int label_count = 0;
+	const char **names = (const char **)opt->value;
+
+	if (label_count >= 3)
+		return error("too many labels on the command line");
+	names[label_count++] = arg;
+	return 0;
+}
 
 int cmd_merge_file(int argc, const char **argv, const char *prefix)
 {
-	const char *names[3];
+	const char *names[3] = { NULL, NULL, NULL };
 	mmfile_t mmfs[3];
 	mmbuffer_t result = {NULL, 0};
 	xpparam_t xpp = {XDF_NEED_MINIMAL};
 	int ret = 0, i = 0, to_stdout = 0;
+	int merge_level = XDL_MERGE_ZEALOUS_ALNUM;
+	int merge_style = 0, quiet = 0;
+	int nongit;
 
-	while (argc > 4) {
-		if (!strcmp(argv[1], "-L") && i < 3) {
-			names[i++] = argv[2];
-			argc--;
-			argv++;
-		} else if (!strcmp(argv[1], "-p") ||
-				!strcmp(argv[1], "--stdout"))
-			to_stdout = 1;
-		else if (!strcmp(argv[1], "-q") ||
-				!strcmp(argv[1], "--quiet"))
-			freopen("/dev/null", "w", stderr);
-		else
-			usage(merge_file_usage);
-		argc--;
-		argv++;
+	struct option options[] = {
+		OPT_BOOLEAN('p', "stdout", &to_stdout, "send results to standard output"),
+		OPT_SET_INT(0, "diff3", &merge_style, "use a diff3 based merge", XDL_MERGE_DIFF3),
+		OPT__QUIET(&quiet),
+		OPT_CALLBACK('L', NULL, names, "name",
+			     "set labels for file1/orig_file/file2", &label_cb),
+		OPT_END(),
+	};
+
+	prefix = setup_git_directory_gently(&nongit);
+	if (!nongit) {
+		/* Read the configuration file */
+		git_config(git_xmerge_config, NULL);
+		if (0 <= git_xmerge_style)
+			merge_style = git_xmerge_style;
 	}
 
-	if (argc != 4)
-		usage(merge_file_usage);
-
-	for (; i < 3; i++)
-		names[i] = argv[i + 1];
+	argc = parse_options(argc, argv, options, merge_file_usage, 0);
+	if (argc != 3)
+		usage_with_options(merge_file_usage, options);
+	if (quiet)
+		freopen("/dev/null", "w", stderr);
 
 	for (i = 0; i < 3; i++) {
-		if (read_mmfile(mmfs + i, argv[i + 1]))
+		if (!names[i])
+			names[i] = argv[i];
+		if (read_mmfile(mmfs + i, argv[i]))
 			return -1;
 		if (buffer_is_binary(mmfs[i].ptr, mmfs[i].size))
 			return error("Cannot merge binary files: %s\n",
-					argv[i + 1]);
+					argv[i]);
 	}
 
 	ret = xdl_merge(mmfs + 1, mmfs + 0, names[0], mmfs + 2, names[2],
-			&xpp, XDL_MERGE_ZEALOUS_ALNUM, &result);
+			&xpp, merge_level | merge_style, &result);
 
 	for (i = 0; i < 3; i++)
 		free(mmfs[i].ptr);
 
 	if (ret >= 0) {
-		const char *filename = argv[1];
+		const char *filename = argv[0];
 		FILE *f = to_stdout ? stdout : fopen(filename, "wb");
 
 		if (!f)
diff --git a/builtin-merge-recursive.c b/builtin-merge-recursive.c
index dfb363ee2f..6b534c1a66 100644
--- a/builtin-merge-recursive.c
+++ b/builtin-merge-recursive.c
@@ -1,1307 +1,8 @@
-/*
- * Recursive Merge algorithm stolen from git-merge-recursive.py by
- * Fredrik Kuivinen.
- * The thieves were Alex Riesen and Johannes Schindelin, in June/July 2006
- */
 #include "cache.h"
-#include "cache-tree.h"
 #include "commit.h"
-#include "blob.h"
-#include "builtin.h"
-#include "tree-walk.h"
-#include "diff.h"
-#include "diffcore.h"
 #include "tag.h"
-#include "unpack-trees.h"
-#include "string-list.h"
-#include "xdiff-interface.h"
-#include "ll-merge.h"
-#include "interpolate.h"
-#include "attr.h"
 #include "merge-recursive.h"
 
-static int subtree_merge;
-
-static struct tree *shift_tree_object(struct tree *one, struct tree *two)
-{
-	unsigned char shifted[20];
-
-	/*
-	 * NEEDSWORK: this limits the recursion depth to hardcoded
-	 * value '2' to avoid excessive overhead.
-	 */
-	shift_tree(one->object.sha1, two->object.sha1, shifted, 2);
-	if (!hashcmp(two->object.sha1, shifted))
-		return two;
-	return lookup_tree(shifted);
-}
-
-/*
- * A virtual commit has
- * - (const char *)commit->util set to the name, and
- * - *(int *)commit->object.sha1 set to the virtual id.
- */
-
-static struct commit *make_virtual_commit(struct tree *tree, const char *comment)
-{
-	struct commit *commit = xcalloc(1, sizeof(struct commit));
-	static unsigned virtual_id = 1;
-	commit->tree = tree;
-	commit->util = (void*)comment;
-	*(int*)commit->object.sha1 = virtual_id++;
-	/* avoid warnings */
-	commit->object.parsed = 1;
-	return commit;
-}
-
-/*
- * Since we use get_tree_entry(), which does not put the read object into
- * the object pool, we cannot rely on a == b.
- */
-static int sha_eq(const unsigned char *a, const unsigned char *b)
-{
-	if (!a && !b)
-		return 2;
-	return a && b && hashcmp(a, b) == 0;
-}
-
-/*
- * Since we want to write the index eventually, we cannot reuse the index
- * for these (temporary) data.
- */
-struct stage_data
-{
-	struct
-	{
-		unsigned mode;
-		unsigned char sha[20];
-	} stages[4];
-	unsigned processed:1;
-};
-
-static struct string_list current_file_set = {NULL, 0, 0, 1};
-static struct string_list current_directory_set = {NULL, 0, 0, 1};
-
-static int call_depth = 0;
-static int verbosity = 2;
-static int diff_rename_limit = -1;
-static int merge_rename_limit = -1;
-static int buffer_output = 1;
-static struct strbuf obuf = STRBUF_INIT;
-
-static int show(int v)
-{
-	return (!call_depth && verbosity >= v) || verbosity >= 5;
-}
-
-static void flush_output(void)
-{
-	if (obuf.len) {
-		fputs(obuf.buf, stdout);
-		strbuf_reset(&obuf);
-	}
-}
-
-static void output(int v, const char *fmt, ...)
-{
-	int len;
-	va_list ap;
-
-	if (!show(v))
-		return;
-
-	strbuf_grow(&obuf, call_depth * 2 + 2);
-	memset(obuf.buf + obuf.len, ' ', call_depth * 2);
-	strbuf_setlen(&obuf, obuf.len + call_depth * 2);
-
-	va_start(ap, fmt);
-	len = vsnprintf(obuf.buf + obuf.len, strbuf_avail(&obuf), fmt, ap);
-	va_end(ap);
-
-	if (len < 0)
-		len = 0;
-	if (len >= strbuf_avail(&obuf)) {
-		strbuf_grow(&obuf, len + 2);
-		va_start(ap, fmt);
-		len = vsnprintf(obuf.buf + obuf.len, strbuf_avail(&obuf), fmt, ap);
-		va_end(ap);
-		if (len >= strbuf_avail(&obuf)) {
-			die("this should not happen, your snprintf is broken");
-		}
-	}
-	strbuf_setlen(&obuf, obuf.len + len);
-	strbuf_add(&obuf, "\n", 1);
-	if (!buffer_output)
-		flush_output();
-}
-
-static void output_commit_title(struct commit *commit)
-{
-	int i;
-	flush_output();
-	for (i = call_depth; i--;)
-		fputs("  ", stdout);
-	if (commit->util)
-		printf("virtual %s\n", (char *)commit->util);
-	else {
-		printf("%s ", find_unique_abbrev(commit->object.sha1, DEFAULT_ABBREV));
-		if (parse_commit(commit) != 0)
-			printf("(bad commit)\n");
-		else {
-			const char *s;
-			int len;
-			for (s = commit->buffer; *s; s++)
-				if (*s == '\n' && s[1] == '\n') {
-					s += 2;
-					break;
-				}
-			for (len = 0; s[len] && '\n' != s[len]; len++)
-				; /* do nothing */
-			printf("%.*s\n", len, s);
-		}
-	}
-}
-
-static int add_cacheinfo(unsigned int mode, const unsigned char *sha1,
-		const char *path, int stage, int refresh, int options)
-{
-	struct cache_entry *ce;
-	ce = make_cache_entry(mode, sha1 ? sha1 : null_sha1, path, stage, refresh);
-	if (!ce)
-		return error("addinfo_cache failed for path '%s'", path);
-	return add_cache_entry(ce, options);
-}
-
-/*
- * This is a global variable which is used in a number of places but
- * only written to in the 'merge' function.
- *
- * index_only == 1    => Don't leave any non-stage 0 entries in the cache and
- *                       don't update the working directory.
- *               0    => Leave unmerged entries in the cache and update
- *                       the working directory.
- */
-static int index_only = 0;
-
-static void init_tree_desc_from_tree(struct tree_desc *desc, struct tree *tree)
-{
-	parse_tree(tree);
-	init_tree_desc(desc, tree->buffer, tree->size);
-}
-
-static int git_merge_trees(int index_only,
-			   struct tree *common,
-			   struct tree *head,
-			   struct tree *merge)
-{
-	int rc;
-	struct tree_desc t[3];
-	struct unpack_trees_options opts;
-
-	memset(&opts, 0, sizeof(opts));
-	if (index_only)
-		opts.index_only = 1;
-	else
-		opts.update = 1;
-	opts.merge = 1;
-	opts.head_idx = 2;
-	opts.fn = threeway_merge;
-	opts.src_index = &the_index;
-	opts.dst_index = &the_index;
-
-	init_tree_desc_from_tree(t+0, common);
-	init_tree_desc_from_tree(t+1, head);
-	init_tree_desc_from_tree(t+2, merge);
-
-	rc = unpack_trees(3, t, &opts);
-	cache_tree_free(&active_cache_tree);
-	return rc;
-}
-
-struct tree *write_tree_from_memory(void)
-{
-	struct tree *result = NULL;
-
-	if (unmerged_cache()) {
-		int i;
-		output(0, "There are unmerged index entries:");
-		for (i = 0; i < active_nr; i++) {
-			struct cache_entry *ce = active_cache[i];
-			if (ce_stage(ce))
-				output(0, "%d %.*s", ce_stage(ce), ce_namelen(ce), ce->name);
-		}
-		return NULL;
-	}
-
-	if (!active_cache_tree)
-		active_cache_tree = cache_tree();
-
-	if (!cache_tree_fully_valid(active_cache_tree) &&
-	    cache_tree_update(active_cache_tree,
-			      active_cache, active_nr, 0, 0) < 0)
-		die("error building trees");
-
-	result = lookup_tree(active_cache_tree->sha1);
-
-	return result;
-}
-
-static int save_files_dirs(const unsigned char *sha1,
-		const char *base, int baselen, const char *path,
-		unsigned int mode, int stage, void *context)
-{
-	int len = strlen(path);
-	char *newpath = xmalloc(baselen + len + 1);
-	memcpy(newpath, base, baselen);
-	memcpy(newpath + baselen, path, len);
-	newpath[baselen + len] = '\0';
-
-	if (S_ISDIR(mode))
-		string_list_insert(newpath, &current_directory_set);
-	else
-		string_list_insert(newpath, &current_file_set);
-	free(newpath);
-
-	return READ_TREE_RECURSIVE;
-}
-
-static int get_files_dirs(struct tree *tree)
-{
-	int n;
-	if (read_tree_recursive(tree, "", 0, 0, NULL, save_files_dirs, NULL))
-		return 0;
-	n = current_file_set.nr + current_directory_set.nr;
-	return n;
-}
-
-/*
- * Returns an index_entry instance which doesn't have to correspond to
- * a real cache entry in Git's index.
- */
-static struct stage_data *insert_stage_data(const char *path,
-		struct tree *o, struct tree *a, struct tree *b,
-		struct string_list *entries)
-{
-	struct string_list_item *item;
-	struct stage_data *e = xcalloc(1, sizeof(struct stage_data));
-	get_tree_entry(o->object.sha1, path,
-			e->stages[1].sha, &e->stages[1].mode);
-	get_tree_entry(a->object.sha1, path,
-			e->stages[2].sha, &e->stages[2].mode);
-	get_tree_entry(b->object.sha1, path,
-			e->stages[3].sha, &e->stages[3].mode);
-	item = string_list_insert(path, entries);
-	item->util = e;
-	return e;
-}
-
-/*
- * Create a dictionary mapping file names to stage_data objects. The
- * dictionary contains one entry for every path with a non-zero stage entry.
- */
-static struct string_list *get_unmerged(void)
-{
-	struct string_list *unmerged = xcalloc(1, sizeof(struct string_list));
-	int i;
-
-	unmerged->strdup_strings = 1;
-
-	for (i = 0; i < active_nr; i++) {
-		struct string_list_item *item;
-		struct stage_data *e;
-		struct cache_entry *ce = active_cache[i];
-		if (!ce_stage(ce))
-			continue;
-
-		item = string_list_lookup(ce->name, unmerged);
-		if (!item) {
-			item = string_list_insert(ce->name, unmerged);
-			item->util = xcalloc(1, sizeof(struct stage_data));
-		}
-		e = item->util;
-		e->stages[ce_stage(ce)].mode = ce->ce_mode;
-		hashcpy(e->stages[ce_stage(ce)].sha, ce->sha1);
-	}
-
-	return unmerged;
-}
-
-struct rename
-{
-	struct diff_filepair *pair;
-	struct stage_data *src_entry;
-	struct stage_data *dst_entry;
-	unsigned processed:1;
-};
-
-/*
- * Get information of all renames which occurred between 'o_tree' and
- * 'tree'. We need the three trees in the merge ('o_tree', 'a_tree' and
- * 'b_tree') to be able to associate the correct cache entries with
- * the rename information. 'tree' is always equal to either a_tree or b_tree.
- */
-static struct string_list *get_renames(struct tree *tree,
-					struct tree *o_tree,
-					struct tree *a_tree,
-					struct tree *b_tree,
-					struct string_list *entries)
-{
-	int i;
-	struct string_list *renames;
-	struct diff_options opts;
-
-	renames = xcalloc(1, sizeof(struct string_list));
-	diff_setup(&opts);
-	DIFF_OPT_SET(&opts, RECURSIVE);
-	opts.detect_rename = DIFF_DETECT_RENAME;
-	opts.rename_limit = merge_rename_limit >= 0 ? merge_rename_limit :
-			    diff_rename_limit >= 0 ? diff_rename_limit :
-			    500;
-	opts.warn_on_too_large_rename = 1;
-	opts.output_format = DIFF_FORMAT_NO_OUTPUT;
-	if (diff_setup_done(&opts) < 0)
-		die("diff setup failed");
-	diff_tree_sha1(o_tree->object.sha1, tree->object.sha1, "", &opts);
-	diffcore_std(&opts);
-	for (i = 0; i < diff_queued_diff.nr; ++i) {
-		struct string_list_item *item;
-		struct rename *re;
-		struct diff_filepair *pair = diff_queued_diff.queue[i];
-		if (pair->status != 'R') {
-			diff_free_filepair(pair);
-			continue;
-		}
-		re = xmalloc(sizeof(*re));
-		re->processed = 0;
-		re->pair = pair;
-		item = string_list_lookup(re->pair->one->path, entries);
-		if (!item)
-			re->src_entry = insert_stage_data(re->pair->one->path,
-					o_tree, a_tree, b_tree, entries);
-		else
-			re->src_entry = item->util;
-
-		item = string_list_lookup(re->pair->two->path, entries);
-		if (!item)
-			re->dst_entry = insert_stage_data(re->pair->two->path,
-					o_tree, a_tree, b_tree, entries);
-		else
-			re->dst_entry = item->util;
-		item = string_list_insert(pair->one->path, renames);
-		item->util = re;
-	}
-	opts.output_format = DIFF_FORMAT_NO_OUTPUT;
-	diff_queued_diff.nr = 0;
-	diff_flush(&opts);
-	return renames;
-}
-
-static int update_stages(const char *path, struct diff_filespec *o,
-			 struct diff_filespec *a, struct diff_filespec *b,
-			 int clear)
-{
-	int options = ADD_CACHE_OK_TO_ADD | ADD_CACHE_OK_TO_REPLACE;
-	if (clear)
-		if (remove_file_from_cache(path))
-			return -1;
-	if (o)
-		if (add_cacheinfo(o->mode, o->sha1, path, 1, 0, options))
-			return -1;
-	if (a)
-		if (add_cacheinfo(a->mode, a->sha1, path, 2, 0, options))
-			return -1;
-	if (b)
-		if (add_cacheinfo(b->mode, b->sha1, path, 3, 0, options))
-			return -1;
-	return 0;
-}
-
-static int remove_path(const char *name)
-{
-	int ret;
-	char *slash, *dirs;
-
-	ret = unlink(name);
-	if (ret)
-		return ret;
-	dirs = xstrdup(name);
-	while ((slash = strrchr(name, '/'))) {
-		*slash = '\0';
-		if (rmdir(name) != 0)
-			break;
-	}
-	free(dirs);
-	return ret;
-}
-
-static int remove_file(int clean, const char *path, int no_wd)
-{
-	int update_cache = index_only || clean;
-	int update_working_directory = !index_only && !no_wd;
-
-	if (update_cache) {
-		if (remove_file_from_cache(path))
-			return -1;
-	}
-	if (update_working_directory) {
-		unlink(path);
-		if (errno != ENOENT || errno != EISDIR)
-			return -1;
-		remove_path(path);
-	}
-	return 0;
-}
-
-static char *unique_path(const char *path, const char *branch)
-{
-	char *newpath = xmalloc(strlen(path) + 1 + strlen(branch) + 8 + 1);
-	int suffix = 0;
-	struct stat st;
-	char *p = newpath + strlen(path);
-	strcpy(newpath, path);
-	*(p++) = '~';
-	strcpy(p, branch);
-	for (; *p; ++p)
-		if ('/' == *p)
-			*p = '_';
-	while (string_list_has_string(&current_file_set, newpath) ||
-	       string_list_has_string(&current_directory_set, newpath) ||
-	       lstat(newpath, &st) == 0)
-		sprintf(p, "_%d", suffix++);
-
-	string_list_insert(newpath, &current_file_set);
-	return newpath;
-}
-
-static void flush_buffer(int fd, const char *buf, unsigned long size)
-{
-	while (size > 0) {
-		long ret = write_in_full(fd, buf, size);
-		if (ret < 0) {
-			/* Ignore epipe */
-			if (errno == EPIPE)
-				break;
-			die("merge-recursive: %s", strerror(errno));
-		} else if (!ret) {
-			die("merge-recursive: disk full?");
-		}
-		size -= ret;
-		buf += ret;
-	}
-}
-
-static int make_room_for_path(const char *path)
-{
-	int status;
-	const char *msg = "failed to create path '%s'%s";
-
-	status = safe_create_leading_directories_const(path);
-	if (status) {
-		if (status == -3) {
-			/* something else exists */
-			error(msg, path, ": perhaps a D/F conflict?");
-			return -1;
-		}
-		die(msg, path, "");
-	}
-
-	/* Successful unlink is good.. */
-	if (!unlink(path))
-		return 0;
-	/* .. and so is no existing file */
-	if (errno == ENOENT)
-		return 0;
-	/* .. but not some other error (who really cares what?) */
-	return error(msg, path, ": perhaps a D/F conflict?");
-}
-
-static void update_file_flags(const unsigned char *sha,
-			      unsigned mode,
-			      const char *path,
-			      int update_cache,
-			      int update_wd)
-{
-	if (index_only)
-		update_wd = 0;
-
-	if (update_wd) {
-		enum object_type type;
-		void *buf;
-		unsigned long size;
-
-		if (S_ISGITLINK(mode))
-			die("cannot read object %s '%s': It is a submodule!",
-			    sha1_to_hex(sha), path);
-
-		buf = read_sha1_file(sha, &type, &size);
-		if (!buf)
-			die("cannot read object %s '%s'", sha1_to_hex(sha), path);
-		if (type != OBJ_BLOB)
-			die("blob expected for %s '%s'", sha1_to_hex(sha), path);
-		if (S_ISREG(mode)) {
-			struct strbuf strbuf;
-			strbuf_init(&strbuf, 0);
-			if (convert_to_working_tree(path, buf, size, &strbuf)) {
-				free(buf);
-				size = strbuf.len;
-				buf = strbuf_detach(&strbuf, NULL);
-			}
-		}
-
-		if (make_room_for_path(path) < 0) {
-			update_wd = 0;
-			free(buf);
-			goto update_index;
-		}
-		if (S_ISREG(mode) || (!has_symlinks && S_ISLNK(mode))) {
-			int fd;
-			if (mode & 0100)
-				mode = 0777;
-			else
-				mode = 0666;
-			fd = open(path, O_WRONLY | O_TRUNC | O_CREAT, mode);
-			if (fd < 0)
-				die("failed to open %s: %s", path, strerror(errno));
-			flush_buffer(fd, buf, size);
-			close(fd);
-		} else if (S_ISLNK(mode)) {
-			char *lnk = xmemdupz(buf, size);
-			safe_create_leading_directories_const(path);
-			unlink(path);
-			symlink(lnk, path);
-			free(lnk);
-		} else
-			die("do not know what to do with %06o %s '%s'",
-			    mode, sha1_to_hex(sha), path);
-		free(buf);
-	}
- update_index:
-	if (update_cache)
-		add_cacheinfo(mode, sha, path, 0, update_wd, ADD_CACHE_OK_TO_ADD);
-}
-
-static void update_file(int clean,
-			const unsigned char *sha,
-			unsigned mode,
-			const char *path)
-{
-	update_file_flags(sha, mode, path, index_only || clean, !index_only);
-}
-
-/* Low level file merging, update and removal */
-
-struct merge_file_info
-{
-	unsigned char sha[20];
-	unsigned mode;
-	unsigned clean:1,
-		 merge:1;
-};
-
-static void fill_mm(const unsigned char *sha1, mmfile_t *mm)
-{
-	unsigned long size;
-	enum object_type type;
-
-	if (!hashcmp(sha1, null_sha1)) {
-		mm->ptr = xstrdup("");
-		mm->size = 0;
-		return;
-	}
-
-	mm->ptr = read_sha1_file(sha1, &type, &size);
-	if (!mm->ptr || type != OBJ_BLOB)
-		die("unable to read blob object %s", sha1_to_hex(sha1));
-	mm->size = size;
-}
-
-static int merge_3way(mmbuffer_t *result_buf,
-		      struct diff_filespec *o,
-		      struct diff_filespec *a,
-		      struct diff_filespec *b,
-		      const char *branch1,
-		      const char *branch2)
-{
-	mmfile_t orig, src1, src2;
-	char *name1, *name2;
-	int merge_status;
-
-	name1 = xstrdup(mkpath("%s:%s", branch1, a->path));
-	name2 = xstrdup(mkpath("%s:%s", branch2, b->path));
-
-	fill_mm(o->sha1, &orig);
-	fill_mm(a->sha1, &src1);
-	fill_mm(b->sha1, &src2);
-
-	merge_status = ll_merge(result_buf, a->path, &orig,
-				&src1, name1, &src2, name2,
-				index_only);
-
-	free(name1);
-	free(name2);
-	free(orig.ptr);
-	free(src1.ptr);
-	free(src2.ptr);
-	return merge_status;
-}
-
-static struct merge_file_info merge_file(struct diff_filespec *o,
-		struct diff_filespec *a, struct diff_filespec *b,
-		const char *branch1, const char *branch2)
-{
-	struct merge_file_info result;
-	result.merge = 0;
-	result.clean = 1;
-
-	if ((S_IFMT & a->mode) != (S_IFMT & b->mode)) {
-		result.clean = 0;
-		if (S_ISREG(a->mode)) {
-			result.mode = a->mode;
-			hashcpy(result.sha, a->sha1);
-		} else {
-			result.mode = b->mode;
-			hashcpy(result.sha, b->sha1);
-		}
-	} else {
-		if (!sha_eq(a->sha1, o->sha1) && !sha_eq(b->sha1, o->sha1))
-			result.merge = 1;
-
-		/*
-		 * Merge modes
-		 */
-		if (a->mode == b->mode || a->mode == o->mode)
-			result.mode = b->mode;
-		else {
-			result.mode = a->mode;
-			if (b->mode != o->mode) {
-				result.clean = 0;
-				result.merge = 1;
-			}
-		}
-
-		if (sha_eq(a->sha1, b->sha1) || sha_eq(a->sha1, o->sha1))
-			hashcpy(result.sha, b->sha1);
-		else if (sha_eq(b->sha1, o->sha1))
-			hashcpy(result.sha, a->sha1);
-		else if (S_ISREG(a->mode)) {
-			mmbuffer_t result_buf;
-			int merge_status;
-
-			merge_status = merge_3way(&result_buf, o, a, b,
-						  branch1, branch2);
-
-			if ((merge_status < 0) || !result_buf.ptr)
-				die("Failed to execute internal merge");
-
-			if (write_sha1_file(result_buf.ptr, result_buf.size,
-					    blob_type, result.sha))
-				die("Unable to add %s to database",
-				    a->path);
-
-			free(result_buf.ptr);
-			result.clean = (merge_status == 0);
-		} else if (S_ISGITLINK(a->mode)) {
-			result.clean = 0;
-			hashcpy(result.sha, a->sha1);
-		} else if (S_ISLNK(a->mode)) {
-			hashcpy(result.sha, a->sha1);
-
-			if (!sha_eq(a->sha1, b->sha1))
-				result.clean = 0;
-		} else {
-			die("unsupported object type in the tree");
-		}
-	}
-
-	return result;
-}
-
-static void conflict_rename_rename(struct rename *ren1,
-				   const char *branch1,
-				   struct rename *ren2,
-				   const char *branch2)
-{
-	char *del[2];
-	int delp = 0;
-	const char *ren1_dst = ren1->pair->two->path;
-	const char *ren2_dst = ren2->pair->two->path;
-	const char *dst_name1 = ren1_dst;
-	const char *dst_name2 = ren2_dst;
-	if (string_list_has_string(&current_directory_set, ren1_dst)) {
-		dst_name1 = del[delp++] = unique_path(ren1_dst, branch1);
-		output(1, "%s is a directory in %s adding as %s instead",
-		       ren1_dst, branch2, dst_name1);
-		remove_file(0, ren1_dst, 0);
-	}
-	if (string_list_has_string(&current_directory_set, ren2_dst)) {
-		dst_name2 = del[delp++] = unique_path(ren2_dst, branch2);
-		output(1, "%s is a directory in %s adding as %s instead",
-		       ren2_dst, branch1, dst_name2);
-		remove_file(0, ren2_dst, 0);
-	}
-	if (index_only) {
-		remove_file_from_cache(dst_name1);
-		remove_file_from_cache(dst_name2);
-		/*
-		 * Uncomment to leave the conflicting names in the resulting tree
-		 *
-		 * update_file(0, ren1->pair->two->sha1, ren1->pair->two->mode, dst_name1);
-		 * update_file(0, ren2->pair->two->sha1, ren2->pair->two->mode, dst_name2);
-		 */
-	} else {
-		update_stages(dst_name1, NULL, ren1->pair->two, NULL, 1);
-		update_stages(dst_name2, NULL, NULL, ren2->pair->two, 1);
-	}
-	while (delp--)
-		free(del[delp]);
-}
-
-static void conflict_rename_dir(struct rename *ren1,
-				const char *branch1)
-{
-	char *new_path = unique_path(ren1->pair->two->path, branch1);
-	output(1, "Renaming %s to %s instead", ren1->pair->one->path, new_path);
-	remove_file(0, ren1->pair->two->path, 0);
-	update_file(0, ren1->pair->two->sha1, ren1->pair->two->mode, new_path);
-	free(new_path);
-}
-
-static void conflict_rename_rename_2(struct rename *ren1,
-				     const char *branch1,
-				     struct rename *ren2,
-				     const char *branch2)
-{
-	char *new_path1 = unique_path(ren1->pair->two->path, branch1);
-	char *new_path2 = unique_path(ren2->pair->two->path, branch2);
-	output(1, "Renaming %s to %s and %s to %s instead",
-	       ren1->pair->one->path, new_path1,
-	       ren2->pair->one->path, new_path2);
-	remove_file(0, ren1->pair->two->path, 0);
-	update_file(0, ren1->pair->two->sha1, ren1->pair->two->mode, new_path1);
-	update_file(0, ren2->pair->two->sha1, ren2->pair->two->mode, new_path2);
-	free(new_path2);
-	free(new_path1);
-}
-
-static int process_renames(struct string_list *a_renames,
-			   struct string_list *b_renames,
-			   const char *a_branch,
-			   const char *b_branch)
-{
-	int clean_merge = 1, i, j;
-	struct string_list a_by_dst = {NULL, 0, 0, 0}, b_by_dst = {NULL, 0, 0, 0};
-	const struct rename *sre;
-
-	for (i = 0; i < a_renames->nr; i++) {
-		sre = a_renames->items[i].util;
-		string_list_insert(sre->pair->two->path, &a_by_dst)->util
-			= sre->dst_entry;
-	}
-	for (i = 0; i < b_renames->nr; i++) {
-		sre = b_renames->items[i].util;
-		string_list_insert(sre->pair->two->path, &b_by_dst)->util
-			= sre->dst_entry;
-	}
-
-	for (i = 0, j = 0; i < a_renames->nr || j < b_renames->nr;) {
-		int compare;
-		char *src;
-		struct string_list *renames1, *renames2, *renames2Dst;
-		struct rename *ren1 = NULL, *ren2 = NULL;
-		const char *branch1, *branch2;
-		const char *ren1_src, *ren1_dst;
-
-		if (i >= a_renames->nr) {
-			compare = 1;
-			ren2 = b_renames->items[j++].util;
-		} else if (j >= b_renames->nr) {
-			compare = -1;
-			ren1 = a_renames->items[i++].util;
-		} else {
-			compare = strcmp(a_renames->items[i].string,
-					b_renames->items[j].string);
-			if (compare <= 0)
-				ren1 = a_renames->items[i++].util;
-			if (compare >= 0)
-				ren2 = b_renames->items[j++].util;
-		}
-
-		/* TODO: refactor, so that 1/2 are not needed */
-		if (ren1) {
-			renames1 = a_renames;
-			renames2 = b_renames;
-			renames2Dst = &b_by_dst;
-			branch1 = a_branch;
-			branch2 = b_branch;
-		} else {
-			struct rename *tmp;
-			renames1 = b_renames;
-			renames2 = a_renames;
-			renames2Dst = &a_by_dst;
-			branch1 = b_branch;
-			branch2 = a_branch;
-			tmp = ren2;
-			ren2 = ren1;
-			ren1 = tmp;
-		}
-		src = ren1->pair->one->path;
-
-		ren1->dst_entry->processed = 1;
-		ren1->src_entry->processed = 1;
-
-		if (ren1->processed)
-			continue;
-		ren1->processed = 1;
-
-		ren1_src = ren1->pair->one->path;
-		ren1_dst = ren1->pair->two->path;
-
-		if (ren2) {
-			const char *ren2_src = ren2->pair->one->path;
-			const char *ren2_dst = ren2->pair->two->path;
-			/* Renamed in 1 and renamed in 2 */
-			if (strcmp(ren1_src, ren2_src) != 0)
-				die("ren1.src != ren2.src");
-			ren2->dst_entry->processed = 1;
-			ren2->processed = 1;
-			if (strcmp(ren1_dst, ren2_dst) != 0) {
-				clean_merge = 0;
-				output(1, "CONFLICT (rename/rename): "
-				       "Rename \"%s\"->\"%s\" in branch \"%s\" "
-				       "rename \"%s\"->\"%s\" in \"%s\"%s",
-				       src, ren1_dst, branch1,
-				       src, ren2_dst, branch2,
-				       index_only ? " (left unresolved)": "");
-				if (index_only) {
-					remove_file_from_cache(src);
-					update_file(0, ren1->pair->one->sha1,
-						    ren1->pair->one->mode, src);
-				}
-				conflict_rename_rename(ren1, branch1, ren2, branch2);
-			} else {
-				struct merge_file_info mfi;
-				remove_file(1, ren1_src, 1);
-				mfi = merge_file(ren1->pair->one,
-						 ren1->pair->two,
-						 ren2->pair->two,
-						 branch1,
-						 branch2);
-				if (mfi.merge || !mfi.clean)
-					output(1, "Renaming %s->%s", src, ren1_dst);
-
-				if (mfi.merge)
-					output(2, "Auto-merging %s", ren1_dst);
-
-				if (!mfi.clean) {
-					output(1, "CONFLICT (content): merge conflict in %s",
-					       ren1_dst);
-					clean_merge = 0;
-
-					if (!index_only)
-						update_stages(ren1_dst,
-							      ren1->pair->one,
-							      ren1->pair->two,
-							      ren2->pair->two,
-							      1 /* clear */);
-				}
-				update_file(mfi.clean, mfi.sha, mfi.mode, ren1_dst);
-			}
-		} else {
-			/* Renamed in 1, maybe changed in 2 */
-			struct string_list_item *item;
-			/* we only use sha1 and mode of these */
-			struct diff_filespec src_other, dst_other;
-			int try_merge, stage = a_renames == renames1 ? 3: 2;
-
-			remove_file(1, ren1_src, index_only || stage == 3);
-
-			hashcpy(src_other.sha1, ren1->src_entry->stages[stage].sha);
-			src_other.mode = ren1->src_entry->stages[stage].mode;
-			hashcpy(dst_other.sha1, ren1->dst_entry->stages[stage].sha);
-			dst_other.mode = ren1->dst_entry->stages[stage].mode;
-
-			try_merge = 0;
-
-			if (string_list_has_string(&current_directory_set, ren1_dst)) {
-				clean_merge = 0;
-				output(1, "CONFLICT (rename/directory): Rename %s->%s in %s "
-				       " directory %s added in %s",
-				       ren1_src, ren1_dst, branch1,
-				       ren1_dst, branch2);
-				conflict_rename_dir(ren1, branch1);
-			} else if (sha_eq(src_other.sha1, null_sha1)) {
-				clean_merge = 0;
-				output(1, "CONFLICT (rename/delete): Rename %s->%s in %s "
-				       "and deleted in %s",
-				       ren1_src, ren1_dst, branch1,
-				       branch2);
-				update_file(0, ren1->pair->two->sha1, ren1->pair->two->mode, ren1_dst);
-			} else if (!sha_eq(dst_other.sha1, null_sha1)) {
-				const char *new_path;
-				clean_merge = 0;
-				try_merge = 1;
-				output(1, "CONFLICT (rename/add): Rename %s->%s in %s. "
-				       "%s added in %s",
-				       ren1_src, ren1_dst, branch1,
-				       ren1_dst, branch2);
-				new_path = unique_path(ren1_dst, branch2);
-				output(1, "Adding as %s instead", new_path);
-				update_file(0, dst_other.sha1, dst_other.mode, new_path);
-			} else if ((item = string_list_lookup(ren1_dst, renames2Dst))) {
-				ren2 = item->util;
-				clean_merge = 0;
-				ren2->processed = 1;
-				output(1, "CONFLICT (rename/rename): Rename %s->%s in %s. "
-				       "Rename %s->%s in %s",
-				       ren1_src, ren1_dst, branch1,
-				       ren2->pair->one->path, ren2->pair->two->path, branch2);
-				conflict_rename_rename_2(ren1, branch1, ren2, branch2);
-			} else
-				try_merge = 1;
-
-			if (try_merge) {
-				struct diff_filespec *o, *a, *b;
-				struct merge_file_info mfi;
-				src_other.path = (char *)ren1_src;
-
-				o = ren1->pair->one;
-				if (a_renames == renames1) {
-					a = ren1->pair->two;
-					b = &src_other;
-				} else {
-					b = ren1->pair->two;
-					a = &src_other;
-				}
-				mfi = merge_file(o, a, b,
-						a_branch, b_branch);
-
-				if (mfi.clean &&
-				    sha_eq(mfi.sha, ren1->pair->two->sha1) &&
-				    mfi.mode == ren1->pair->two->mode)
-					/*
-					 * This messaged is part of
-					 * t6022 test. If you change
-					 * it update the test too.
-					 */
-					output(3, "Skipped %s (merged same as existing)", ren1_dst);
-				else {
-					if (mfi.merge || !mfi.clean)
-						output(1, "Renaming %s => %s", ren1_src, ren1_dst);
-					if (mfi.merge)
-						output(2, "Auto-merging %s", ren1_dst);
-					if (!mfi.clean) {
-						output(1, "CONFLICT (rename/modify): Merge conflict in %s",
-						       ren1_dst);
-						clean_merge = 0;
-
-						if (!index_only)
-							update_stages(ren1_dst,
-								      o, a, b, 1);
-					}
-					update_file(mfi.clean, mfi.sha, mfi.mode, ren1_dst);
-				}
-			}
-		}
-	}
-	string_list_clear(&a_by_dst, 0);
-	string_list_clear(&b_by_dst, 0);
-
-	return clean_merge;
-}
-
-static unsigned char *stage_sha(const unsigned char *sha, unsigned mode)
-{
-	return (is_null_sha1(sha) || mode == 0) ? NULL: (unsigned char *)sha;
-}
-
-/* Per entry merge function */
-static int process_entry(const char *path, struct stage_data *entry,
-			 const char *branch1,
-			 const char *branch2)
-{
-	/*
-	printf("processing entry, clean cache: %s\n", index_only ? "yes": "no");
-	print_index_entry("\tpath: ", entry);
-	*/
-	int clean_merge = 1;
-	unsigned o_mode = entry->stages[1].mode;
-	unsigned a_mode = entry->stages[2].mode;
-	unsigned b_mode = entry->stages[3].mode;
-	unsigned char *o_sha = stage_sha(entry->stages[1].sha, o_mode);
-	unsigned char *a_sha = stage_sha(entry->stages[2].sha, a_mode);
-	unsigned char *b_sha = stage_sha(entry->stages[3].sha, b_mode);
-
-	if (o_sha && (!a_sha || !b_sha)) {
-		/* Case A: Deleted in one */
-		if ((!a_sha && !b_sha) ||
-		    (sha_eq(a_sha, o_sha) && !b_sha) ||
-		    (!a_sha && sha_eq(b_sha, o_sha))) {
-			/* Deleted in both or deleted in one and
-			 * unchanged in the other */
-			if (a_sha)
-				output(2, "Removing %s", path);
-			/* do not touch working file if it did not exist */
-			remove_file(1, path, !a_sha);
-		} else {
-			/* Deleted in one and changed in the other */
-			clean_merge = 0;
-			if (!a_sha) {
-				output(1, "CONFLICT (delete/modify): %s deleted in %s "
-				       "and modified in %s. Version %s of %s left in tree.",
-				       path, branch1,
-				       branch2, branch2, path);
-				update_file(0, b_sha, b_mode, path);
-			} else {
-				output(1, "CONFLICT (delete/modify): %s deleted in %s "
-				       "and modified in %s. Version %s of %s left in tree.",
-				       path, branch2,
-				       branch1, branch1, path);
-				update_file(0, a_sha, a_mode, path);
-			}
-		}
-
-	} else if ((!o_sha && a_sha && !b_sha) ||
-		   (!o_sha && !a_sha && b_sha)) {
-		/* Case B: Added in one. */
-		const char *add_branch;
-		const char *other_branch;
-		unsigned mode;
-		const unsigned char *sha;
-		const char *conf;
-
-		if (a_sha) {
-			add_branch = branch1;
-			other_branch = branch2;
-			mode = a_mode;
-			sha = a_sha;
-			conf = "file/directory";
-		} else {
-			add_branch = branch2;
-			other_branch = branch1;
-			mode = b_mode;
-			sha = b_sha;
-			conf = "directory/file";
-		}
-		if (string_list_has_string(&current_directory_set, path)) {
-			const char *new_path = unique_path(path, add_branch);
-			clean_merge = 0;
-			output(1, "CONFLICT (%s): There is a directory with name %s in %s. "
-			       "Adding %s as %s",
-			       conf, path, other_branch, path, new_path);
-			remove_file(0, path, 0);
-			update_file(0, sha, mode, new_path);
-		} else {
-			output(2, "Adding %s", path);
-			update_file(1, sha, mode, path);
-		}
-	} else if (a_sha && b_sha) {
-		/* Case C: Added in both (check for same permissions) and */
-		/* case D: Modified in both, but differently. */
-		const char *reason = "content";
-		struct merge_file_info mfi;
-		struct diff_filespec o, a, b;
-
-		if (!o_sha) {
-			reason = "add/add";
-			o_sha = (unsigned char *)null_sha1;
-		}
-		output(2, "Auto-merging %s", path);
-		o.path = a.path = b.path = (char *)path;
-		hashcpy(o.sha1, o_sha);
-		o.mode = o_mode;
-		hashcpy(a.sha1, a_sha);
-		a.mode = a_mode;
-		hashcpy(b.sha1, b_sha);
-		b.mode = b_mode;
-
-		mfi = merge_file(&o, &a, &b,
-				 branch1, branch2);
-
-		clean_merge = mfi.clean;
-		if (mfi.clean)
-			update_file(1, mfi.sha, mfi.mode, path);
-		else if (S_ISGITLINK(mfi.mode))
-			output(1, "CONFLICT (submodule): Merge conflict in %s "
-			       "- needs %s", path, sha1_to_hex(b.sha1));
-		else {
-			output(1, "CONFLICT (%s): Merge conflict in %s",
-					reason, path);
-
-			if (index_only)
-				update_file(0, mfi.sha, mfi.mode, path);
-			else
-				update_file_flags(mfi.sha, mfi.mode, path,
-					      0 /* update_cache */, 1 /* update_working_directory */);
-		}
-	} else if (!o_sha && !a_sha && !b_sha) {
-		/*
-		 * this entry was deleted altogether. a_mode == 0 means
-		 * we had that path and want to actively remove it.
-		 */
-		remove_file(1, path, !a_mode);
-	} else
-		die("Fatal merge failure, shouldn't happen.");
-
-	return clean_merge;
-}
-
-int merge_trees(struct tree *head,
-		struct tree *merge,
-		struct tree *common,
-		const char *branch1,
-		const char *branch2,
-		struct tree **result)
-{
-	int code, clean;
-
-	if (subtree_merge) {
-		merge = shift_tree_object(head, merge);
-		common = shift_tree_object(head, common);
-	}
-
-	if (sha_eq(common->object.sha1, merge->object.sha1)) {
-		output(0, "Already uptodate!");
-		*result = head;
-		return 1;
-	}
-
-	code = git_merge_trees(index_only, common, head, merge);
-
-	if (code != 0)
-		die("merging of trees %s and %s failed",
-		    sha1_to_hex(head->object.sha1),
-		    sha1_to_hex(merge->object.sha1));
-
-	if (unmerged_cache()) {
-		struct string_list *entries, *re_head, *re_merge;
-		int i;
-		string_list_clear(&current_file_set, 1);
-		string_list_clear(&current_directory_set, 1);
-		get_files_dirs(head);
-		get_files_dirs(merge);
-
-		entries = get_unmerged();
-		re_head  = get_renames(head, common, head, merge, entries);
-		re_merge = get_renames(merge, common, head, merge, entries);
-		clean = process_renames(re_head, re_merge,
-				branch1, branch2);
-		for (i = 0; i < entries->nr; i++) {
-			const char *path = entries->items[i].string;
-			struct stage_data *e = entries->items[i].util;
-			if (!e->processed
-				&& !process_entry(path, e, branch1, branch2))
-				clean = 0;
-		}
-
-		string_list_clear(re_merge, 0);
-		string_list_clear(re_head, 0);
-		string_list_clear(entries, 1);
-
-	}
-	else
-		clean = 1;
-
-	if (index_only)
-		*result = write_tree_from_memory();
-
-	return clean;
-}
-
-static struct commit_list *reverse_commit_list(struct commit_list *list)
-{
-	struct commit_list *next = NULL, *current, *backup;
-	for (current = list; current; current = backup) {
-		backup = current->next;
-		current->next = next;
-		next = current;
-	}
-	return next;
-}
-
-/*
- * Merge the commits h1 and h2, return the resulting virtual
- * commit object and a flag indicating the cleanness of the merge.
- */
-int merge_recursive(struct commit *h1,
-		    struct commit *h2,
-		    const char *branch1,
-		    const char *branch2,
-		    struct commit_list *ca,
-		    struct commit **result)
-{
-	struct commit_list *iter;
-	struct commit *merged_common_ancestors;
-	struct tree *mrtree = mrtree;
-	int clean;
-
-	if (show(4)) {
-		output(4, "Merging:");
-		output_commit_title(h1);
-		output_commit_title(h2);
-	}
-
-	if (!ca) {
-		ca = get_merge_bases(h1, h2, 1);
-		ca = reverse_commit_list(ca);
-	}
-
-	if (show(5)) {
-		output(5, "found %u common ancestor(s):", commit_list_count(ca));
-		for (iter = ca; iter; iter = iter->next)
-			output_commit_title(iter->item);
-	}
-
-	merged_common_ancestors = pop_commit(&ca);
-	if (merged_common_ancestors == NULL) {
-		/* if there is no common ancestor, make an empty tree */
-		struct tree *tree = xcalloc(1, sizeof(struct tree));
-
-		tree->object.parsed = 1;
-		tree->object.type = OBJ_TREE;
-		pretend_sha1_file(NULL, 0, OBJ_TREE, tree->object.sha1);
-		merged_common_ancestors = make_virtual_commit(tree, "ancestor");
-	}
-
-	for (iter = ca; iter; iter = iter->next) {
-		call_depth++;
-		/*
-		 * When the merge fails, the result contains files
-		 * with conflict markers. The cleanness flag is
-		 * ignored, it was never actually used, as result of
-		 * merge_trees has always overwritten it: the committed
-		 * "conflicts" were already resolved.
-		 */
-		discard_cache();
-		merge_recursive(merged_common_ancestors, iter->item,
-				"Temporary merge branch 1",
-				"Temporary merge branch 2",
-				NULL,
-				&merged_common_ancestors);
-		call_depth--;
-
-		if (!merged_common_ancestors)
-			die("merge returned no commit");
-	}
-
-	discard_cache();
-	if (!call_depth) {
-		read_cache();
-		index_only = 0;
-	} else
-		index_only = 1;
-
-	clean = merge_trees(h1->tree, h2->tree, merged_common_ancestors->tree,
-			    branch1, branch2, &mrtree);
-
-	if (index_only) {
-		*result = make_virtual_commit(mrtree, "merged tree");
-		commit_list_insert(h1, &(*result)->parents);
-		commit_list_insert(h2, &(*result)->parents->next);
-	}
-	flush_output();
-	return clean;
-}
-
 static const char *better_branch_name(const char *branch)
 {
 	static char githead_env[8 + 40 + 1];
@@ -1314,103 +15,58 @@ static const char *better_branch_name(const char *branch)
 	return name ? name : branch;
 }
 
-static struct commit *get_ref(const char *ref)
-{
-	unsigned char sha1[20];
-	struct object *object;
-
-	if (get_sha1(ref, sha1))
-		die("Could not resolve ref '%s'", ref);
-	object = deref_tag(parse_object(sha1), ref, strlen(ref));
-	if (!object)
-		return NULL;
-	if (object->type == OBJ_TREE)
-		return make_virtual_commit((struct tree*)object,
-			better_branch_name(ref));
-	if (object->type != OBJ_COMMIT)
-		return NULL;
-	if (parse_commit((struct commit *)object))
-		die("Could not parse commit '%s'", sha1_to_hex(object->sha1));
-	return (struct commit *)object;
-}
-
-static int merge_config(const char *var, const char *value, void *cb)
-{
-	if (!strcasecmp(var, "merge.verbosity")) {
-		verbosity = git_config_int(var, value);
-		return 0;
-	}
-	if (!strcasecmp(var, "diff.renamelimit")) {
-		diff_rename_limit = git_config_int(var, value);
-		return 0;
-	}
-	if (!strcasecmp(var, "merge.renamelimit")) {
-		merge_rename_limit = git_config_int(var, value);
-		return 0;
-	}
-	return git_default_config(var, value, cb);
-}
-
 int cmd_merge_recursive(int argc, const char **argv, const char *prefix)
 {
-	static const char *bases[20];
-	static unsigned bases_count = 0;
-	int i, clean;
-	const char *branch1, *branch2;
-	struct commit *result, *h1, *h2;
-	struct commit_list *ca = NULL;
-	struct lock_file *lock = xcalloc(1, sizeof(struct lock_file));
-	int index_fd;
+	const unsigned char *bases[21];
+	unsigned bases_count = 0;
+	int i, failed;
+	unsigned char h1[20], h2[20];
+	struct merge_options o;
+	struct commit *result;
 
+	init_merge_options(&o);
 	if (argv[0]) {
 		int namelen = strlen(argv[0]);
 		if (8 < namelen &&
 		    !strcmp(argv[0] + namelen - 8, "-subtree"))
-			subtree_merge = 1;
+			o.subtree_merge = 1;
 	}
 
-	git_config(merge_config, NULL);
-	if (getenv("GIT_MERGE_VERBOSITY"))
-		verbosity = strtol(getenv("GIT_MERGE_VERBOSITY"), NULL, 10);
-
 	if (argc < 4)
 		die("Usage: %s <base>... -- <head> <remote> ...\n", argv[0]);
 
 	for (i = 1; i < argc; ++i) {
 		if (!strcmp(argv[i], "--"))
 			break;
-		if (bases_count < sizeof(bases)/sizeof(*bases))
-			bases[bases_count++] = argv[i];
+		if (bases_count < ARRAY_SIZE(bases)-1) {
+			unsigned char *sha = xmalloc(20);
+			if (get_sha1(argv[i], sha))
+				die("Could not parse object '%s'", argv[i]);
+			bases[bases_count++] = sha;
+		}
+		else
+			warning("Cannot handle more than %zu bases. "
+				"Ignoring %s.", ARRAY_SIZE(bases)-1, argv[i]);
 	}
 	if (argc - i != 3) /* "--" "<head>" "<remote>" */
 		die("Not handling anything other than two heads merge.");
-	if (verbosity >= 5)
-		buffer_output = 0;
 
-	branch1 = argv[++i];
-	branch2 = argv[++i];
+	o.branch1 = argv[++i];
+	o.branch2 = argv[++i];
 
-	h1 = get_ref(branch1);
-	h2 = get_ref(branch2);
+	if (get_sha1(o.branch1, h1))
+		die("Could not resolve ref '%s'", o.branch1);
+	if (get_sha1(o.branch2, h2))
+		die("Could not resolve ref '%s'", o.branch2);
 
-	branch1 = better_branch_name(branch1);
-	branch2 = better_branch_name(branch2);
+	o.branch1 = better_branch_name(o.branch1);
+	o.branch2 = better_branch_name(o.branch2);
 
-	if (show(3))
-		printf("Merging %s with %s\n", branch1, branch2);
+	if (o.verbosity >= 3)
+		printf("Merging %s with %s\n", o.branch1, o.branch2);
 
-	index_fd = hold_locked_index(lock, 1);
-
-	for (i = 0; i < bases_count; i++) {
-		struct commit *ancestor = get_ref(bases[i]);
-		ca = commit_list_insert(ancestor, &ca);
-	}
-	clean = merge_recursive(h1, h2, branch1, branch2, ca, &result);
-
-	if (active_cache_changed &&
-	    (write_cache(index_fd, active_cache, active_nr) ||
-	     commit_locked_index(lock)))
-			die ("unable to write %s", get_index_file());
-
-	return clean ? 0: 1;
+	failed = merge_recursive_generic(&o, h1, h2, bases_count, bases, &result);
+	if (failed < 0)
+		return 128; /* die() error code */
+	return failed;
 }
diff --git a/builtin-merge.c b/builtin-merge.c
index 9ad9791068..38266baf5f 100644
--- a/builtin-merge.c
+++ b/builtin-merge.c
@@ -23,6 +23,7 @@
 #include "color.h"
 #include "rerere.h"
 #include "help.h"
+#include "merge-recursive.h"
 
 #define DEFAULT_TWOHEAD (1<<0)
 #define DEFAULT_OCTOPUS (1<<1)
@@ -122,8 +123,7 @@ static struct strategy *get_strategy(const char *name)
 		exit(1);
 	}
 
-	ret = xmalloc(sizeof(struct strategy));
-	memset(ret, 0, sizeof(struct strategy));
+	ret = xcalloc(1, sizeof(struct strategy));
 	ret->name = xstrdup(name);
 	return ret;
 }
@@ -476,6 +476,8 @@ static int git_merge_config(const char *k, const char *v, void *cb)
 
 		buf = xstrdup(v);
 		argc = split_cmdline(buf, &argv);
+		if (argc < 0)
+			die("Bad branch.%s.mergeoptions string", branch);
 		argv = xrealloc(argv, sizeof(*argv) * (argc + 2));
 		memmove(argv + 1, argv, sizeof(*argv) * (argc + 1));
 		argc++;
@@ -544,29 +546,76 @@ static int try_merge_strategy(const char *strategy, struct commit_list *common,
 	int i = 0, ret;
 	struct commit_list *j;
 	struct strbuf buf;
+	int index_fd;
+	struct lock_file *lock = xcalloc(1, sizeof(struct lock_file));
 
-	args = xmalloc((4 + commit_list_count(common) +
-			commit_list_count(remoteheads)) * sizeof(char *));
-	strbuf_init(&buf, 0);
-	strbuf_addf(&buf, "merge-%s", strategy);
-	args[i++] = buf.buf;
-	for (j = common; j; j = j->next)
-		args[i++] = xstrdup(sha1_to_hex(j->item->object.sha1));
-	args[i++] = "--";
-	args[i++] = head_arg;
-	for (j = remoteheads; j; j = j->next)
-		args[i++] = xstrdup(sha1_to_hex(j->item->object.sha1));
-	args[i] = NULL;
-	ret = run_command_v_opt(args, RUN_GIT_CMD);
-	strbuf_release(&buf);
-	i = 1;
-	for (j = common; j; j = j->next)
-		free((void *)args[i++]);
-	i += 2;
-	for (j = remoteheads; j; j = j->next)
-		free((void *)args[i++]);
-	free(args);
-	return -ret;
+	index_fd = hold_locked_index(lock, 1);
+	refresh_cache(REFRESH_QUIET);
+	if (active_cache_changed &&
+			(write_cache(index_fd, active_cache, active_nr) ||
+			 commit_locked_index(lock)))
+		return error("Unable to write index.");
+	rollback_lock_file(lock);
+
+	if (!strcmp(strategy, "recursive") || !strcmp(strategy, "subtree")) {
+		int clean;
+		struct commit *result;
+		struct lock_file *lock = xcalloc(1, sizeof(struct lock_file));
+		int index_fd;
+		struct commit_list *reversed = NULL;
+		struct merge_options o;
+
+		if (remoteheads->next) {
+			error("Not handling anything other than two heads merge.");
+			return 2;
+		}
+
+		init_merge_options(&o);
+		if (!strcmp(strategy, "subtree"))
+			o.subtree_merge = 1;
+
+		o.branch1 = head_arg;
+		o.branch2 = remoteheads->item->util;
+
+		for (j = common; j; j = j->next)
+			commit_list_insert(j->item, &reversed);
+
+		index_fd = hold_locked_index(lock, 1);
+		clean = merge_recursive(&o, lookup_commit(head),
+				remoteheads->item, reversed, &result);
+		if (active_cache_changed &&
+				(write_cache(index_fd, active_cache, active_nr) ||
+				 commit_locked_index(lock)))
+			die ("unable to write %s", get_index_file());
+		rollback_lock_file(lock);
+		return clean ? 0 : 1;
+	} else {
+		args = xmalloc((4 + commit_list_count(common) +
+					commit_list_count(remoteheads)) * sizeof(char *));
+		strbuf_init(&buf, 0);
+		strbuf_addf(&buf, "merge-%s", strategy);
+		args[i++] = buf.buf;
+		for (j = common; j; j = j->next)
+			args[i++] = xstrdup(sha1_to_hex(j->item->object.sha1));
+		args[i++] = "--";
+		args[i++] = head_arg;
+		for (j = remoteheads; j; j = j->next)
+			args[i++] = xstrdup(sha1_to_hex(j->item->object.sha1));
+		args[i] = NULL;
+		ret = run_command_v_opt(args, RUN_GIT_CMD);
+		strbuf_release(&buf);
+		i = 1;
+		for (j = common; j; j = j->next)
+			free((void *)args[i++]);
+		i += 2;
+		for (j = remoteheads; j; j = j->next)
+			free((void *)args[i++]);
+		free(args);
+		discard_cache();
+		if (read_cache() < 0)
+			die("failed to read the cache");
+		return -ret;
+	}
 }
 
 static void count_diff_files(struct diff_queue_struct *q,
@@ -683,15 +732,15 @@ static void add_strategies(const char *string, unsigned attr)
 static int merge_trivial(void)
 {
 	unsigned char result_tree[20], result_commit[20];
-	struct commit_list *parent = xmalloc(sizeof(struct commit_list *));
+	struct commit_list *parent = xmalloc(sizeof(*parent));
 
 	write_tree_trivial(result_tree);
 	printf("Wonderful.\n");
 	parent->item = lookup_commit(head);
-	parent->next = xmalloc(sizeof(struct commit_list *));
+	parent->next = xmalloc(sizeof(*parent->next));
 	parent->next->item = remoteheads->item;
 	parent->next->next = NULL;
-	commit_tree(merge_msg.buf, result_tree, parent, result_commit);
+	commit_tree(merge_msg.buf, result_tree, parent, result_commit, NULL);
 	finish(result_commit, "In-index merge");
 	drop_save();
 	return 0;
@@ -720,7 +769,7 @@ static int finish_automerge(struct commit_list *common,
 	}
 	free_commit_list(remoteheads);
 	strbuf_addch(&merge_msg, '\n');
-	commit_tree(merge_msg.buf, result_tree, parents, result_commit);
+	commit_tree(merge_msg.buf, result_tree, parents, result_commit, NULL);
 	strbuf_addf(&buf, "Merge made by %s.", wt_strategy);
 	finish(result_commit, buf.buf);
 	strbuf_release(&buf);
@@ -777,10 +826,6 @@ static int evaluate_result(void)
 	int cnt = 0;
 	struct rev_info rev;
 
-	discard_cache();
-	if (read_cache() < 0)
-		die("failed to read the cache");
-
 	/* Check how many files differ. */
 	init_revisions(&rev, "");
 	setup_revisions(0, NULL, &rev, NULL);
@@ -914,12 +959,14 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 
 	for (i = 0; i < argc; i++) {
 		struct object *o;
+		struct commit *commit;
 
 		o = peel_to_type(argv[i], 0, NULL, OBJ_COMMIT);
 		if (!o)
 			die("%s - not something we can merge", argv[i]);
-		remotes = &commit_list_insert(lookup_commit(o->sha1),
-			remotes)->next;
+		commit = lookup_commit(o->sha1);
+		commit->util = (void *)argv[i];
+		remotes = &commit_list_insert(commit, remotes)->next;
 
 		strbuf_addf(&buf, "GITHEAD_%s", sha1_to_hex(o->sha1));
 		setenv(buf.buf, argv[i], 1);
@@ -1113,7 +1160,6 @@ int cmd_merge(int argc, const char **argv, const char *prefix)
 		}
 
 		/* Automerge succeeded. */
-		discard_cache();
 		write_tree_trivial(result_tree);
 		automerge_was_ok = 1;
 		break;
diff --git a/builtin-pack-objects.c b/builtin-pack-objects.c
index 5fc1b8c6fb..59c30d1caa 100644
--- a/builtin-pack-objects.c
+++ b/builtin-pack-objects.c
@@ -465,7 +465,7 @@ static void write_pack_file(void)
 			char tmpname[PATH_MAX];
 			int fd;
 			snprintf(tmpname, sizeof(tmpname),
-				 "%s/tmp_pack_XXXXXX", get_object_directory());
+				 "%s/pack/tmp_pack_XXXXXX", get_object_directory());
 			fd = xmkstemp(tmpname);
 			pack_tmp_name = xstrdup(tmpname);
 			f = sha1fd(fd, pack_tmp_name);
@@ -1369,12 +1369,10 @@ static void find_deltas(struct object_entry **list, unsigned *list_size,
 			int window, int depth, unsigned *processed)
 {
 	uint32_t i, idx = 0, count = 0;
-	unsigned int array_size = window * sizeof(struct unpacked);
 	struct unpacked *array;
 	unsigned long mem_usage = 0;
 
-	array = xmalloc(array_size);
-	memset(array, 0, array_size);
+	array = xcalloc(window, sizeof(struct unpacked));
 
 	for (;;) {
 		struct object_entry *entry = *list++;
diff --git a/builtin-prune.c b/builtin-prune.c
index c767a0ac89..7b4ec80e62 100644
--- a/builtin-prune.c
+++ b/builtin-prune.c
@@ -7,13 +7,14 @@
 #include "parse-options.h"
 
 static const char * const prune_usage[] = {
-	"git prune [-n] [--expire <time>] [--] [<head>...]",
+	"git prune [-n] [-v] [--expire <time>] [--] [<head>...]",
 	NULL
 };
 static int show_only;
+static int verbose;
 static unsigned long expire;
 
-static int prune_tmp_object(char *path, const char *filename)
+static int prune_tmp_object(const char *path, const char *filename)
 {
 	const char *fullpath = mkpath("%s/%s", path, filename);
 	if (expire) {
@@ -39,11 +40,12 @@ static int prune_object(char *path, const char *filename, const unsigned char *s
 		if (st.st_mtime > expire)
 			return 0;
 	}
-	if (show_only) {
+	if (show_only || verbose) {
 		enum object_type type = sha1_object_info(sha1, NULL);
 		printf("%s %s\n", sha1_to_hex(sha1),
 		       (type > 0) ? typename(type) : "unknown");
-	} else
+	}
+	if (!show_only)
 		unlink(fullpath);
 	return 0;
 }
@@ -110,24 +112,22 @@ static void prune_object_dir(const char *path)
 /*
  * Write errors (particularly out of space) can result in
  * failed temporary packs (and more rarely indexes and other
- * files begining with "tmp_") accumulating in the
- * object directory.
+ * files begining with "tmp_") accumulating in the object
+ * and the pack directories.
  */
-static void remove_temporary_files(void)
+static void remove_temporary_files(const char *path)
 {
 	DIR *dir;
 	struct dirent *de;
-	char* dirname=get_object_directory();
 
-	dir = opendir(dirname);
+	dir = opendir(path);
 	if (!dir) {
-		fprintf(stderr, "Unable to open object directory %s\n",
-			dirname);
+		fprintf(stderr, "Unable to open directory %s\n", path);
 		return;
 	}
 	while ((de = readdir(dir)) != NULL)
 		if (!prefixcmp(de->d_name, "tmp_"))
-			prune_tmp_object(dirname, de->d_name);
+			prune_tmp_object(path, de->d_name);
 	closedir(dir);
 }
 
@@ -137,10 +137,13 @@ int cmd_prune(int argc, const char **argv, const char *prefix)
 	const struct option options[] = {
 		OPT_BOOLEAN('n', NULL, &show_only,
 			    "do not remove, show only"),
+		OPT_BOOLEAN('v', NULL, &verbose,
+			"report pruned objects"),
 		OPT_DATE(0, "expire", &expire,
 			 "expire objects older than <time>"),
 		OPT_END()
 	};
+	char *s;
 
 	save_commit_buffer = 0;
 	init_revisions(&revs, prefix);
@@ -163,6 +166,9 @@ int cmd_prune(int argc, const char **argv, const char *prefix)
 	prune_object_dir(get_object_directory());
 
 	prune_packed_objects(show_only);
-	remove_temporary_files();
+	remove_temporary_files(get_object_directory());
+	s = xstrdup(mkpath("%s/pack", get_object_directory()));
+	remove_temporary_files(s);
+	free(s);
 	return 0;
 }
diff --git a/builtin-push.c b/builtin-push.c
index cc6666f75e..122fdcfbdc 100644
--- a/builtin-push.c
+++ b/builtin-push.c
@@ -10,7 +10,7 @@
 #include "parse-options.h"
 
 static const char * const push_usage[] = {
-	"git push [--all | --mirror] [--dry-run] [--tags] [--receive-pack=<git-receive-pack>] [--repo=all] [-f | --force] [-v] [<repository> <refspec>...]",
+	"git push [--all | --mirror] [--dry-run] [--tags] [--receive-pack=<git-receive-pack>] [--repo=<repository>] [-f | --force] [-v] [<repository> <refspec>...]",
 	NULL,
 };
 
diff --git a/receive-pack.c b/builtin-receive-pack.c
similarity index 91%
rename from receive-pack.c
rename to builtin-receive-pack.c
index b81678a970..45e3cd90fd 100644
--- a/receive-pack.c
+++ b/builtin-receive-pack.c
@@ -6,6 +6,8 @@
 #include "exec_cmd.h"
 #include "commit.h"
 #include "object.h"
+#include "remote.h"
+#include "transport.h"
 
 static const char receive_pack_usage[] = "git-receive-pack <git-dir>";
 
@@ -462,14 +464,48 @@ static int delete_only(struct command *cmd)
 	return 1;
 }
 
-int main(int argc, char **argv)
+static int add_refs_from_alternate(struct alternate_object_database *e, void *unused)
+{
+	char *other = xstrdup(make_absolute_path(e->base));
+	size_t len = strlen(other);
+	struct remote *remote;
+	struct transport *transport;
+	const struct ref *extra;
+
+	while (other[len-1] == '/')
+		other[--len] = '\0';
+	if (len < 8 || memcmp(other + len - 8, "/objects", 8))
+		return 0;
+	/* Is this a git repository with refs? */
+	memcpy(other + len - 8, "/refs", 6);
+	if (!is_directory(other))
+		return 0;
+	other[len - 8] = '\0';
+	remote = remote_get(other);
+	transport = transport_get(remote, other);
+	for (extra = transport_get_remote_refs(transport);
+	     extra;
+	     extra = extra->next) {
+		add_extra_ref(".have", extra->old_sha1, 0);
+	}
+	transport_disconnect(transport);
+	free(other);
+	return 0;
+}
+
+static void add_alternate_refs(void)
+{
+	foreach_alt_odb(add_refs_from_alternate, NULL);
+}
+
+int cmd_receive_pack(int argc, const char **argv, const char *prefix)
 {
 	int i;
 	char *dir = NULL;
 
 	argv++;
 	for (i = 1; i < argc; i++) {
-		char *arg = *argv++;
+		const char *arg = *argv++;
 
 		if (*arg == '-') {
 			/* Do flag handling here */
@@ -477,7 +513,7 @@ int main(int argc, char **argv)
 		}
 		if (dir)
 			usage(receive_pack_usage);
-		dir = arg;
+		dir = xstrdup(arg);
 	}
 	if (!dir)
 		usage(receive_pack_usage);
@@ -497,7 +533,9 @@ int main(int argc, char **argv)
 	else if (0 <= receive_unpack_limit)
 		unpack_limit = receive_unpack_limit;
 
+	add_alternate_refs();
 	write_head_info();
+	clear_extra_refs();
 
 	/* EOF */
 	packet_flush(1);
diff --git a/builtin-remote.c b/builtin-remote.c
index 4cb763f989..90a4e35828 100644
--- a/builtin-remote.c
+++ b/builtin-remote.c
@@ -650,10 +650,13 @@ static int get_one_entry(struct remote *remote, void *priv)
 {
 	struct string_list *list = priv;
 
-	string_list_append(remote->name, list)->util = remote->url_nr ?
-		(void *)remote->url[0] : NULL;
-	if (remote->url_nr > 1)
-		warning("Remote %s has more than one URL", remote->name);
+	if (remote->url_nr > 0) {
+		int i;
+
+		for (i = 0; i < remote->url_nr; i++)
+			string_list_append(remote->name, list)->util = (void *)remote->url[i];
+	} else
+		string_list_append(remote->name, list)->util = NULL;
 
 	return 0;
 }
@@ -669,10 +672,14 @@ static int show_all(void)
 		sort_string_list(&list);
 		for (i = 0; i < list.nr; i++) {
 			struct string_list_item *item = list.items + i;
-			printf("%s%s%s\n", item->string,
-				verbose ? "\t" : "",
-				verbose && item->util ?
-					(const char *)item->util : "");
+			if (verbose)
+				printf("%s\t%s\n", item->string,
+					item->util ? (const char *)item->util : "");
+			else {
+				if (i && !strcmp((item - 1)->string, item->string))
+					continue;
+				printf("%s\n", item->string);
+			}
 		}
 	}
 	return result;
diff --git a/builtin-reset.c b/builtin-reset.c
index c24c219091..16e6bb20f1 100644
--- a/builtin-reset.c
+++ b/builtin-reset.c
@@ -121,6 +121,9 @@ static void update_index_from_diff(struct diff_queue_struct *q,
 			struct cache_entry *ce;
 			ce = make_cache_entry(one->mode, one->sha1, one->path,
 				0, 0);
+			if (!ce)
+				die("make_cache_entry failed for path '%s'",
+				    one->path);
 			add_cache_entry(ce, ADD_CACHE_OK_TO_ADD |
 				ADD_CACHE_OK_TO_REPLACE);
 		} else
diff --git a/builtin-revert.c b/builtin-revert.c
index 36677053f8..8486539740 100644
--- a/builtin-revert.c
+++ b/builtin-revert.c
@@ -12,6 +12,7 @@
 #include "diff.h"
 #include "revision.h"
 #include "rerere.h"
+#include "merge-recursive.h"
 
 /*
  * This implements the builtins revert and cherry-pick.
@@ -201,36 +202,6 @@ static void set_author_ident_env(const char *message)
 			sha1_to_hex(commit->object.sha1));
 }
 
-static int merge_recursive(const char *base_sha1,
-		const char *head_sha1, const char *head_name,
-		const char *next_sha1, const char *next_name)
-{
-	char buffer[256];
-	const char *argv[6];
-	int i = 0;
-
-	sprintf(buffer, "GITHEAD_%s", head_sha1);
-	setenv(buffer, head_name, 1);
-	sprintf(buffer, "GITHEAD_%s", next_sha1);
-	setenv(buffer, next_name, 1);
-
-	/*
-	 * This three way merge is an interesting one.  We are at
-	 * $head, and would want to apply the change between $commit
-	 * and $prev on top of us (when reverting), or the change between
-	 * $prev and $commit on top of us (when cherry-picking or replaying).
-	 */
-	argv[i++] = "merge-recursive";
-	if (base_sha1)
-		argv[i++] = base_sha1;
-	argv[i++] = "--";
-	argv[i++] = head_sha1;
-	argv[i++] = next_sha1;
-	argv[i++] = NULL;
-
-	return run_command_v_opt(argv, RUN_COMMAND_NO_STDIN | RUN_GIT_CMD);
-}
-
 static char *help_msg(const unsigned char *sha1)
 {
 	static char helpbuf[1024];
@@ -263,14 +234,27 @@ static int index_is_dirty(void)
 	return !!DIFF_OPT_TST(&rev.diffopt, HAS_CHANGES);
 }
 
+static struct tree *empty_tree(void)
+{
+	struct tree *tree = xcalloc(1, sizeof(struct tree));
+
+	tree->object.parsed = 1;
+	tree->object.type = OBJ_TREE;
+	pretend_sha1_file(NULL, 0, OBJ_TREE, tree->object.sha1);
+	return tree;
+}
+
 static int revert_or_cherry_pick(int argc, const char **argv)
 {
 	unsigned char head[20];
 	struct commit *base, *next, *parent;
-	int i;
+	int i, index_fd, clean;
 	char *oneline, *reencoded_message = NULL;
 	const char *message, *encoding;
 	const char *defmsg = xstrdup(git_path("MERGE_MSG"));
+	struct merge_options o;
+	struct tree *result, *next_tree, *base_tree, *head_tree;
+	static struct lock_file index_lock;
 
 	git_config(git_default_config, NULL);
 	me = action == REVERT ? "revert" : "cherry-pick";
@@ -281,6 +265,8 @@ static int revert_or_cherry_pick(int argc, const char **argv)
 	if (action == REVERT && !no_replay)
 		die("revert is incompatible with replay");
 
+	if (read_cache() < 0)
+		die("git %s: failed to read the index", me);
 	if (no_commit) {
 		/*
 		 * We do not intend to commit immediately.  We just want to
@@ -293,12 +279,12 @@ static int revert_or_cherry_pick(int argc, const char **argv)
 	} else {
 		if (get_sha1("HEAD", head))
 			die ("You do not have a valid HEAD");
-		if (read_cache() < 0)
-			die("could not read the index");
 		if (index_is_dirty())
 			die ("Dirty index: cannot %s", me);
-		discard_cache();
 	}
+	discard_cache();
+
+	index_fd = hold_locked_index(&index_lock, 1);
 
 	if (!commit->parents) {
 		if (action == REVERT)
@@ -332,6 +318,10 @@ static int revert_or_cherry_pick(int argc, const char **argv)
 		die ("Cannot get commit message for %s",
 				sha1_to_hex(commit->object.sha1));
 
+	if (parent && parse_commit(parent) < 0)
+		die("%s: cannot parse parent commit %s",
+		    me, sha1_to_hex(parent->object.sha1));
+
 	/*
 	 * "commit" is an existing commit.  We would want to apply
 	 * the difference it introduces since its first parent "prev"
@@ -374,13 +364,26 @@ static int revert_or_cherry_pick(int argc, const char **argv)
 		}
 	}
 
-	if (merge_recursive(base == NULL ?
-				NULL : sha1_to_hex(base->object.sha1),
-				sha1_to_hex(head), "HEAD",
-				sha1_to_hex(next->object.sha1), oneline) ||
-			write_cache_as_tree(head, 0, NULL)) {
+	read_cache();
+	init_merge_options(&o);
+	o.branch1 = "HEAD";
+	o.branch2 = oneline;
+
+	head_tree = parse_tree_indirect(head);
+	next_tree = next ? next->tree : empty_tree();
+	base_tree = base ? base->tree : empty_tree();
+
+	clean = merge_trees(&o,
+			    head_tree,
+			    next_tree, base_tree, &result);
+
+	if (active_cache_changed &&
+	    (write_cache(index_fd, active_cache, active_nr) ||
+	     commit_locked_index(&index_lock)))
+		die("%s: Unable to write new index file", me);
+
+	if (!clean) {
 		add_to_msg("\nConflicts:\n\n");
-		read_cache();
 		for (i = 0; i < active_nr;) {
 			struct cache_entry *ce = active_cache[i++];
 			if (ce_stage(ce)) {
diff --git a/builtin-rm.c b/builtin-rm.c
index fdac34f242..e06640cf8d 100644
--- a/builtin-rm.c
+++ b/builtin-rm.c
@@ -29,26 +29,6 @@ static void add_list(const char *name)
 	list.name[list.nr++] = name;
 }
 
-static int remove_file(const char *name)
-{
-	int ret;
-	char *slash;
-
-	ret = unlink(name);
-	if (ret && errno == ENOENT)
-		/* The user has removed it from the filesystem by hand */
-		ret = errno = 0;
-
-	if (!ret && (slash = strrchr(name, '/'))) {
-		char *n = xstrdup(name);
-		do {
-			n[slash - name] = 0;
-			name = n;
-		} while (!rmdir(name) && (slash = strrchr(name, '/')));
-	}
-	return ret;
-}
-
 static int check_local_mod(unsigned char *head, int index_only)
 {
 	/* items in list are already sorted in the cache order,
@@ -157,6 +137,7 @@ int cmd_rm(int argc, const char **argv, const char *prefix)
 
 	if (read_cache() < 0)
 		die("index file corrupt");
+	refresh_cache(REFRESH_QUIET);
 
 	pathspec = get_pathspec(prefix, argv);
 	seen = NULL;
@@ -239,7 +220,7 @@ int cmd_rm(int argc, const char **argv, const char *prefix)
 		int removed = 0;
 		for (i = 0; i < list.nr; i++) {
 			const char *path = list.name[i];
-			if (!remove_file(path)) {
+			if (!remove_path(path)) {
 				removed = 1;
 				continue;
 			}
diff --git a/builtin-send-pack.c b/builtin-send-pack.c
index 2af9f29341..910db92b62 100644
--- a/builtin-send-pack.c
+++ b/builtin-send-pack.c
@@ -18,7 +18,7 @@ static struct send_pack_args args = {
 /*
  * Make a pack stream and spit it out into file descriptor fd
  */
-static int pack_objects(int fd, struct ref *refs)
+static int pack_objects(int fd, struct ref *refs, struct extra_have_objects *extra)
 {
 	/*
 	 * The child becomes pack-objects --revs; we feed
@@ -34,6 +34,8 @@ static int pack_objects(int fd, struct ref *refs)
 		NULL,
 	};
 	struct child_process po;
+	int i;
+	char buf[42];
 
 	if (args.use_thin_pack)
 		argv[4] = "--thin";
@@ -49,9 +51,15 @@ static int pack_objects(int fd, struct ref *refs)
 	 * We feed the pack-objects we just spawned with revision
 	 * parameters by writing to the pipe.
 	 */
-	while (refs) {
-		char buf[42];
+	for (i = 0; i < extra->nr; i++) {
+		memcpy(buf + 1, sha1_to_hex(&extra->array[i][0]), 40);
+		buf[0] = '^';
+		buf[41] = '\n';
+		if (!write_or_whine(po.in, buf, 42, "send-pack: send refs"))
+			break;
+	}
 
+	while (refs) {
 		if (!is_null_sha1(refs->old_sha1) &&
 		    has_sha1_file(refs->old_sha1)) {
 			memcpy(buf + 1, sha1_to_hex(refs->old_sha1), 40);
@@ -381,14 +389,17 @@ static int do_send_pack(int in, int out, struct remote *remote, const char *dest
 	int expect_status_report = 0;
 	int flags = MATCH_REFS_NONE;
 	int ret;
+	struct extra_have_objects extra_have;
 
+	memset(&extra_have, 0, sizeof(extra_have));
 	if (args.send_all)
 		flags |= MATCH_REFS_ALL;
 	if (args.send_mirror)
 		flags |= MATCH_REFS_MIRROR;
 
 	/* No funny business with the matcher */
-	remote_tail = get_remote_heads(in, &remote_refs, 0, NULL, REF_NORMAL);
+	remote_tail = get_remote_heads(in, &remote_refs, 0, NULL, REF_NORMAL,
+				       &extra_have);
 	get_local_heads();
 
 	/* Does the other end support the reporting? */
@@ -496,7 +507,7 @@ static int do_send_pack(int in, int out, struct remote *remote, const char *dest
 
 	packet_flush(out);
 	if (new_refs && !args.dry_run) {
-		if (pack_objects(out, remote_refs) < 0)
+		if (pack_objects(out, remote_refs, &extra_have) < 0)
 			return -1;
 	}
 	else
diff --git a/builtin-unpack-objects.c b/builtin-unpack-objects.c
index 40b20f26e8..9f4bdd3296 100644
--- a/builtin-unpack-objects.c
+++ b/builtin-unpack-objects.c
@@ -19,7 +19,7 @@ static const char unpack_usage[] = "git unpack-objects [-n] [-q] [-r] [--strict]
 static unsigned char buffer[4096];
 static unsigned int offset, len;
 static off_t consumed_bytes;
-static SHA_CTX ctx;
+static git_SHA_CTX ctx;
 
 /*
  * When running under --strict mode, objects whose reachability are
@@ -59,7 +59,7 @@ static void *fill(int min)
 	if (min > sizeof(buffer))
 		die("cannot fill %d bytes", min);
 	if (offset) {
-		SHA1_Update(&ctx, buffer, offset);
+		git_SHA1_Update(&ctx, buffer, offset);
 		memmove(buffer, buffer + offset, len);
 		offset = 0;
 	}
@@ -477,8 +477,7 @@ static void unpack_all(void)
 
 	if (!quiet)
 		progress = start_progress("Unpacking objects", nr_objects);
-	obj_list = xmalloc(nr_objects * sizeof(*obj_list));
-	memset(obj_list, 0, nr_objects * sizeof(*obj_list));
+	obj_list = xcalloc(nr_objects, sizeof(*obj_list));
 	for (i = 0; i < nr_objects; i++) {
 		unpack_one(i);
 		display_progress(progress, i + 1);
@@ -539,10 +538,10 @@ int cmd_unpack_objects(int argc, const char **argv, const char *prefix)
 		/* We don't take any non-flag arguments now.. Maybe some day */
 		usage(unpack_usage);
 	}
-	SHA1_Init(&ctx);
+	git_SHA1_Init(&ctx);
 	unpack_all();
-	SHA1_Update(&ctx, buffer, offset);
-	SHA1_Final(sha1, &ctx);
+	git_SHA1_Update(&ctx, buffer, offset);
+	git_SHA1_Final(sha1, &ctx);
 	if (strict)
 		write_rest();
 	if (hashcmp(fill(20), sha1))
diff --git a/builtin.h b/builtin.h
index e67cb2090e..1495cf6a20 100644
--- a/builtin.h
+++ b/builtin.h
@@ -17,7 +17,8 @@ extern int read_line_with_nul(char *buf, int size, FILE *file);
 extern int fmt_merge_msg(int merge_summary, struct strbuf *in,
 	struct strbuf *out);
 extern int commit_tree(const char *msg, unsigned char *tree,
-		struct commit_list *parents, unsigned char *ret);
+		struct commit_list *parents, unsigned char *ret,
+		const char *author);
 extern int check_pager_config(const char *cmd);
 
 extern int cmd_add(int argc, const char **argv, const char *prefix);
@@ -78,6 +79,7 @@ extern int cmd_prune(int argc, const char **argv, const char *prefix);
 extern int cmd_prune_packed(int argc, const char **argv, const char *prefix);
 extern int cmd_push(int argc, const char **argv, const char *prefix);
 extern int cmd_read_tree(int argc, const char **argv, const char *prefix);
+extern int cmd_receive_pack(int argc, const char **argv, const char *prefix);
 extern int cmd_reflog(int argc, const char **argv, const char *prefix);
 extern int cmd_remote(int argc, const char **argv, const char *prefix);
 extern int cmd_config(int argc, const char **argv, const char *prefix);
diff --git a/cache.h b/cache.h
index de8c2b6266..991544cf0b 100644
--- a/cache.h
+++ b/cache.h
@@ -6,8 +6,14 @@
 #include "hash.h"
 
 #include SHA1_HEADER
-#include <zlib.h>
+#ifndef git_SHA_CTX
+#define git_SHA_CTX	SHA_CTX
+#define git_SHA1_Init	SHA1_Init
+#define git_SHA1_Update	SHA1_Update
+#define git_SHA1_Final	SHA1_Final
+#endif
 
+#include <zlib.h>
 #if defined(NO_DEFLATE_BOUND) || ZLIB_VERNUM < 0x1200
 #define deflateBound(c,s)  ((s) + (((s) + 7) >> 3) + (((s) + 63) >> 6) + 11)
 #endif
@@ -313,6 +319,7 @@ extern int is_bare_repository(void);
 extern int is_inside_git_dir(void);
 extern char *git_work_tree_cfg;
 extern int is_inside_work_tree(void);
+extern int have_git_dir(void);
 extern const char *get_git_dir(void);
 extern char *get_object_directory(void);
 extern char *get_index_file(void);
@@ -371,6 +378,7 @@ extern int index_name_pos(const struct index_state *, const char *name, int name
 #define ADD_CACHE_OK_TO_REPLACE 2	/* Ok to replace file/directory */
 #define ADD_CACHE_SKIP_DFCHECK 4	/* Ok to skip DF conflict checks */
 #define ADD_CACHE_JUST_APPEND 8		/* Append only; tree.c::read_tree() */
+#define ADD_CACHE_NEW_ONLY 16		/* Do not replace existing ones */
 extern int add_index_entry(struct index_state *, struct cache_entry *ce, int option);
 extern struct cache_entry *refresh_cache_entry(struct cache_entry *ce, int really);
 extern void rename_index_entry_at(struct index_state *, int pos, const char *new_name);
@@ -380,6 +388,7 @@ extern int remove_file_from_index(struct index_state *, const char *path);
 #define ADD_CACHE_PRETEND 2
 #define ADD_CACHE_IGNORE_ERRORS	4
 #define ADD_CACHE_IGNORE_REMOVAL 8
+#define ADD_CACHE_INTENT 16
 extern int add_to_index(struct index_state *, const char *path, struct stat *, int flags);
 extern int add_file_to_index(struct index_state *, const char *path, int flags);
 extern struct cache_entry *make_cache_entry(unsigned int mode, const unsigned char *sha1, const char *path, int stage, int refresh);
@@ -533,6 +542,7 @@ static inline int is_absolute_path(const char *path)
 {
 	return path[0] == '/' || has_dos_drive_prefix(path);
 }
+int is_directory(const char *);
 const char *make_absolute_path(const char *path);
 const char *make_nonrelative_path(const char *path);
 const char *make_relative_path(const char *abs, const char *base);
@@ -640,6 +650,8 @@ extern struct alternate_object_database {
 } *alt_odb_list;
 extern void prepare_alt_odb(void);
 extern void add_to_alternates_file(const char *reference);
+typedef int alt_odb_fn(struct alternate_object_database *, void *);
+extern void foreach_alt_odb(alt_odb_fn, void*);
 
 struct pack_window {
 	struct pack_window *next;
@@ -708,7 +720,11 @@ extern struct child_process *git_connect(int fd[2], const char *url, const char
 extern int finish_connect(struct child_process *conn);
 extern int path_match(const char *path, int nr, char **match);
 extern int get_ack(int fd, unsigned char *result_sha1);
-extern struct ref **get_remote_heads(int in, struct ref **list, int nr_match, char **match, unsigned int flags);
+struct extra_have_objects {
+	int nr, alloc;
+	unsigned char (*array)[20];
+};
+extern struct ref **get_remote_heads(int in, struct ref **list, int nr_match, char **match, unsigned int flags, struct extra_have_objects *);
 extern int server_supports(const char *feature);
 
 extern struct packed_git *parse_pack_index(unsigned char *sha1);
@@ -742,7 +758,6 @@ typedef int (*config_fn_t)(const char *, const char *, void *);
 extern int git_default_config(const char *, const char *, void *);
 extern int git_config_from_file(config_fn_t fn, const char *, void *);
 extern int git_config(config_fn_t fn, void *);
-extern int git_parse_long(const char *, long *);
 extern int git_parse_ulong(const char *, unsigned long *);
 extern int git_config_int(const char *, const char *);
 extern unsigned long git_config_ulong(const char *, const char *);
diff --git a/commit.c b/commit.c
index dc0c5bfdab..c99db162a4 100644
--- a/commit.c
+++ b/commit.c
@@ -160,7 +160,7 @@ struct commit_graft *read_graft_line(char *buf, int len)
 	return graft;
 }
 
-int read_graft_file(const char *graft_file)
+static int read_graft_file(const char *graft_file)
 {
 	FILE *fp = fopen(graft_file, "r");
 	char buf[1024];
diff --git a/commit.h b/commit.h
index de15f4d715..4c05864fb4 100644
--- a/commit.h
+++ b/commit.h
@@ -118,7 +118,6 @@ struct commit_graft {
 
 struct commit_graft *read_graft_line(char *buf, int len);
 int register_commit_graft(struct commit_graft *, int);
-int read_graft_file(const char *graft_file);
 struct commit_graft *lookup_commit_graft(const unsigned char *sha1);
 
 extern struct commit_list *get_merge_bases(struct commit *rev1, struct commit *rev2, int cleanup);
diff --git a/compat/cygwin.c b/compat/cygwin.c
new file mode 100644
index 0000000000..423ff20b0e
--- /dev/null
+++ b/compat/cygwin.c
@@ -0,0 +1,127 @@
+#define WIN32_LEAN_AND_MEAN
+#include "../git-compat-util.h"
+#include "win32.h"
+#include "../cache.h" /* to read configuration */
+
+static inline void filetime_to_timespec(const FILETIME *ft, struct timespec *ts)
+{
+	long long winTime = ((long long)ft->dwHighDateTime << 32) +
+			ft->dwLowDateTime;
+	winTime -= 116444736000000000LL; /* Windows to Unix Epoch conversion */
+	/* convert 100-nsecond interval to seconds and nanoseconds */
+	ts->tv_sec = (time_t)(winTime/10000000);
+	ts->tv_nsec = (long)(winTime - ts->tv_sec*10000000LL) * 100;
+}
+
+#define size_to_blocks(s) (((s)+511)/512)
+
+/* do_stat is a common implementation for cygwin_lstat and cygwin_stat.
+ *
+ * To simplify its logic, in the case of cygwin symlinks, this implementation
+ * falls back to the cygwin version of stat/lstat, which is provided as the
+ * last argument.
+ */
+static int do_stat(const char *file_name, struct stat *buf, stat_fn_t cygstat)
+{
+	WIN32_FILE_ATTRIBUTE_DATA fdata;
+
+	if (file_name[0] == '/')
+		return cygstat (file_name, buf);
+
+	if (!(errno = get_file_attr(file_name, &fdata))) {
+		/*
+		 * If the system attribute is set and it is not a directory then
+		 * it could be a symbol link created in the nowinsymlinks mode.
+		 * Normally, Cygwin works in the winsymlinks mode, so this situation
+		 * is very unlikely. For the sake of simplicity of our code, let's
+		 * Cygwin to handle it.
+		 */
+		if ((fdata.dwFileAttributes & FILE_ATTRIBUTE_SYSTEM) &&
+		    !(fdata.dwFileAttributes & FILE_ATTRIBUTE_DIRECTORY))
+			return cygstat(file_name, buf);
+
+		/* fill out the stat structure */
+		buf->st_dev = buf->st_rdev = 0; /* not used by Git */
+		buf->st_ino = 0;
+		buf->st_mode = file_attr_to_st_mode(fdata.dwFileAttributes);
+		buf->st_nlink = 1;
+		buf->st_uid = buf->st_gid = 0;
+#ifdef __CYGWIN_USE_BIG_TYPES__
+		buf->st_size = ((_off64_t)fdata.nFileSizeHigh << 32) +
+			fdata.nFileSizeLow;
+#else
+		buf->st_size = (off_t)fdata.nFileSizeLow;
+#endif
+		buf->st_blocks = size_to_blocks(buf->st_size);
+		filetime_to_timespec(&fdata.ftLastAccessTime, &buf->st_atim);
+		filetime_to_timespec(&fdata.ftLastWriteTime, &buf->st_mtim);
+		filetime_to_timespec(&fdata.ftCreationTime, &buf->st_ctim);
+		return 0;
+	} else if (errno == ENOENT) {
+		/*
+		 * In the winsymlinks mode (which is the default), Cygwin
+		 * emulates symbol links using Windows shortcut files. These
+		 * files are formed by adding .lnk extension. So, if we have
+		 * not found the specified file name, it could be that it is
+		 * a symbol link. Let's Cygwin to deal with that.
+		 */
+		return cygstat(file_name, buf);
+	}
+	return -1;
+}
+
+/* We provide our own lstat/stat functions, since the provided Cygwin versions
+ * of these functions are too slow. These stat functions are tailored for Git's
+ * usage, and therefore they are not meant to be complete and correct emulation
+ * of lstat/stat functionality.
+ */
+static int cygwin_lstat(const char *path, struct stat *buf)
+{
+	return do_stat(path, buf, lstat);
+}
+
+static int cygwin_stat(const char *path, struct stat *buf)
+{
+	return do_stat(path, buf, stat);
+}
+
+
+/*
+ * At start up, we are trying to determine whether Win32 API or cygwin stat
+ * functions should be used. The choice is determined by core.ignorecygwinfstricks.
+ * Reading this option is not always possible immediately as git_dir may be
+ * not be set yet. So until it is set, use cygwin lstat/stat functions.
+ */
+static int native_stat = 1;
+
+static int git_cygwin_config(const char *var, const char *value, void *cb)
+{
+	if (!strcmp(var, "core.ignorecygwinfstricks"))
+		native_stat = git_config_bool(var, value);
+	return 0;
+}
+
+static int init_stat(void)
+{
+	if (have_git_dir()) {
+		git_config(git_cygwin_config, NULL);
+		cygwin_stat_fn = native_stat ? cygwin_stat : stat;
+		cygwin_lstat_fn = native_stat ? cygwin_lstat : lstat;
+		return 0;
+	}
+	return 1;
+}
+
+static int cygwin_stat_stub(const char *file_name, struct stat *buf)
+{
+	return (init_stat() ? stat : *cygwin_stat_fn)(file_name, buf);
+}
+
+static int cygwin_lstat_stub(const char *file_name, struct stat *buf)
+{
+	return (init_stat() ? lstat : *cygwin_lstat_fn)(file_name, buf);
+}
+
+stat_fn_t cygwin_stat_fn = cygwin_stat_stub;
+stat_fn_t cygwin_lstat_fn = cygwin_lstat_stub;
+
diff --git a/compat/cygwin.h b/compat/cygwin.h
new file mode 100644
index 0000000000..a3229f5b4f
--- /dev/null
+++ b/compat/cygwin.h
@@ -0,0 +1,9 @@
+#include <sys/types.h>
+#include <sys/stat.h>
+
+typedef int (*stat_fn_t)(const char*, struct stat*);
+extern stat_fn_t cygwin_stat_fn;
+extern stat_fn_t cygwin_lstat_fn;
+
+#define stat(path, buf) (*cygwin_stat_fn)(path, buf)
+#define lstat(path, buf) (*cygwin_lstat_fn)(path, buf)
diff --git a/compat/mingw.c b/compat/mingw.c
index 7eed60db1b..09858f6c59 100644
--- a/compat/mingw.c
+++ b/compat/mingw.c
@@ -1,4 +1,5 @@
 #include "../git-compat-util.h"
+#include "win32.h"
 #include "../strbuf.h"
 
 unsigned int _CRT_fmode = _O_BINARY;
@@ -31,7 +32,6 @@ static inline time_t filetime_to_time_t(const FILETIME *ft)
 	return (time_t)winTime;
 }
 
-extern int _getdrive( void );
 /* We keep the do_lstat code in a separate function to avoid recursion.
  * When a path ends with a slash, the stat will fail with ENOENT. In
  * this case, we strip the trailing slashes and stat again.
@@ -40,46 +40,19 @@ static int do_lstat(const char *file_name, struct stat *buf)
 {
 	WIN32_FILE_ATTRIBUTE_DATA fdata;
 
-	if (GetFileAttributesExA(file_name, GetFileExInfoStandard, &fdata)) {
-		int fMode = S_IREAD;
-		if (fdata.dwFileAttributes & FILE_ATTRIBUTE_DIRECTORY)
-			fMode |= S_IFDIR;
-		else
-			fMode |= S_IFREG;
-		if (!(fdata.dwFileAttributes & FILE_ATTRIBUTE_READONLY))
-			fMode |= S_IWRITE;
-
+	if (!(errno = get_file_attr(file_name, &fdata))) {
 		buf->st_ino = 0;
 		buf->st_gid = 0;
 		buf->st_uid = 0;
 		buf->st_nlink = 1;
-		buf->st_mode = fMode;
+		buf->st_mode = file_attr_to_st_mode(fdata.dwFileAttributes);
 		buf->st_size = fdata.nFileSizeLow; /* Can't use nFileSizeHigh, since it's not a stat64 */
-		buf->st_dev = buf->st_rdev = (_getdrive() - 1);
+		buf->st_dev = buf->st_rdev = 0; /* not used by Git */
 		buf->st_atime = filetime_to_time_t(&(fdata.ftLastAccessTime));
 		buf->st_mtime = filetime_to_time_t(&(fdata.ftLastWriteTime));
 		buf->st_ctime = filetime_to_time_t(&(fdata.ftCreationTime));
-		errno = 0;
 		return 0;
 	}
-
-	switch (GetLastError()) {
-	case ERROR_ACCESS_DENIED:
-	case ERROR_SHARING_VIOLATION:
-	case ERROR_LOCK_VIOLATION:
-	case ERROR_SHARING_BUFFER_EXCEEDED:
-		errno = EACCES;
-		break;
-	case ERROR_BUFFER_OVERFLOW:
-		errno = ENAMETOOLONG;
-		break;
-	case ERROR_NOT_ENOUGH_MEMORY:
-		errno = ENOMEM;
-		break;
-	default:
-		errno = ENOENT;
-		break;
-	}
 	return -1;
 }
 
@@ -131,21 +104,13 @@ int mingw_fstat(int fd, struct stat *buf)
 		return fstat(fd, buf);
 
 	if (GetFileInformationByHandle(fh, &fdata)) {
-		int fMode = S_IREAD;
-		if (fdata.dwFileAttributes & FILE_ATTRIBUTE_DIRECTORY)
-			fMode |= S_IFDIR;
-		else
-			fMode |= S_IFREG;
-		if (!(fdata.dwFileAttributes & FILE_ATTRIBUTE_READONLY))
-			fMode |= S_IWRITE;
-
 		buf->st_ino = 0;
 		buf->st_gid = 0;
 		buf->st_uid = 0;
 		buf->st_nlink = 1;
-		buf->st_mode = fMode;
+		buf->st_mode = file_attr_to_st_mode(fdata.dwFileAttributes);
 		buf->st_size = fdata.nFileSizeLow; /* Can't use nFileSizeHigh, since it's not a stat64 */
-		buf->st_dev = buf->st_rdev = (_getdrive() - 1);
+		buf->st_dev = buf->st_rdev = 0; /* not used by Git */
 		buf->st_atime = filetime_to_time_t(&(fdata.ftLastAccessTime));
 		buf->st_mtime = filetime_to_time_t(&(fdata.ftLastWriteTime));
 		buf->st_ctime = filetime_to_time_t(&(fdata.ftCreationTime));
diff --git a/compat/win32.h b/compat/win32.h
new file mode 100644
index 0000000000..c26384e595
--- /dev/null
+++ b/compat/win32.h
@@ -0,0 +1,34 @@
+/* common Win32 functions for MinGW and Cygwin */
+#include <windows.h>
+
+static inline int file_attr_to_st_mode (DWORD attr)
+{
+	int fMode = S_IREAD;
+	if (attr & FILE_ATTRIBUTE_DIRECTORY)
+		fMode |= S_IFDIR;
+	else
+		fMode |= S_IFREG;
+	if (!(attr & FILE_ATTRIBUTE_READONLY))
+		fMode |= S_IWRITE;
+	return fMode;
+}
+
+static inline int get_file_attr(const char *fname, WIN32_FILE_ATTRIBUTE_DATA *fdata)
+{
+	if (GetFileAttributesExA(fname, GetFileExInfoStandard, fdata))
+		return 0;
+
+	switch (GetLastError()) {
+	case ERROR_ACCESS_DENIED:
+	case ERROR_SHARING_VIOLATION:
+	case ERROR_LOCK_VIOLATION:
+	case ERROR_SHARING_BUFFER_EXCEEDED:
+		return EACCES;
+	case ERROR_BUFFER_OVERFLOW:
+		return ENAMETOOLONG;
+	case ERROR_NOT_ENOUGH_MEMORY:
+		return ENOMEM;
+	default:
+		return ENOENT;
+	}
+}
diff --git a/config.c b/config.c
index 53f04a076a..18d305c890 100644
--- a/config.c
+++ b/config.c
@@ -205,8 +205,27 @@ static int git_parse_file(config_fn_t fn, void *data)
 	int baselen = 0;
 	static char var[MAXNAME];
 
+	/* U+FEFF Byte Order Mark in UTF8 */
+	static const unsigned char *utf8_bom = (unsigned char *) "\xef\xbb\xbf";
+	const unsigned char *bomptr = utf8_bom;
+
 	for (;;) {
 		int c = get_next_char();
+		if (bomptr && *bomptr) {
+			/* We are at the file beginning; skip UTF8-encoded BOM
+			 * if present. Sane editors won't put this in on their
+			 * own, but e.g. Windows Notepad will do it happily. */
+			if ((unsigned char) c == *bomptr) {
+				bomptr++;
+				continue;
+			} else {
+				/* Do not tolerate partial BOM. */
+				if (bomptr != utf8_bom)
+					break;
+				/* No BOM at file beginning. Cool. */
+				bomptr = NULL;
+			}
+		}
 		if (c == '\n') {
 			if (config_file_eof)
 				return 0;
@@ -255,7 +274,7 @@ static int parse_unit_factor(const char *end, unsigned long *val)
 	return 0;
 }
 
-int git_parse_long(const char *value, long *ret)
+static int git_parse_long(const char *value, long *ret)
 {
 	if (value && *value) {
 		char *end;
@@ -291,7 +310,7 @@ static void die_bad_config(const char *name)
 
 int git_config_int(const char *name, const char *value)
 {
-	long ret;
+	long ret = 0;
 	if (!git_parse_long(value, &ret))
 		die_bad_config(name);
 	return ret;
diff --git a/connect.c b/connect.c
index dd96f8e043..67d2cd86a8 100644
--- a/connect.c
+++ b/connect.c
@@ -41,12 +41,20 @@ int check_ref_type(const struct ref *ref, int flags)
 	return check_ref(ref->name, strlen(ref->name), flags);
 }
 
+static void add_extra_have(struct extra_have_objects *extra, unsigned char *sha1)
+{
+	ALLOC_GROW(extra->array, extra->nr + 1, extra->alloc);
+	hashcpy(&(extra->array[extra->nr][0]), sha1);
+	extra->nr++;
+}
+
 /*
  * Read all the refs from the other end
  */
 struct ref **get_remote_heads(int in, struct ref **list,
 			      int nr_match, char **match,
-			      unsigned int flags)
+			      unsigned int flags,
+			      struct extra_have_objects *extra_have)
 {
 	*list = NULL;
 	for (;;) {
@@ -72,6 +80,12 @@ struct ref **get_remote_heads(int in, struct ref **list,
 			server_capabilities = xstrdup(name + name_len + 1);
 		}
 
+		if (extra_have &&
+		    name_len == 5 && !memcmp(".have", name, 5)) {
+			add_extra_have(extra_have, old_sha1);
+			continue;
+		}
+
 		if (!check_ref(name, name_len, flags))
 			continue;
 		if (nr_match && !path_match(name, nr_match, match))
diff --git a/contrib/completion/git-completion.bash b/contrib/completion/git-completion.bash
index 93f088189e..d192927c20 100755
--- a/contrib/completion/git-completion.bash
+++ b/contrib/completion/git-completion.bash
@@ -785,14 +785,9 @@ _git_fetch ()
 {
 	local cur="${COMP_WORDS[COMP_CWORD]}"
 
-	case "${COMP_WORDS[0]},$COMP_CWORD" in
-	git-fetch*,1)
+	if [ "$COMP_CWORD" = 2 ]; then
 		__gitcomp "$(__git_remotes)"
-		;;
-	git,2)
-		__gitcomp "$(__git_remotes)"
-		;;
-	*)
+	else
 		case "$cur" in
 		*:*)
 			local pfx=""
@@ -811,8 +806,7 @@ _git_fetch ()
 			__gitcomp "$(__git_refs2 "$remote")"
 			;;
 		esac
-		;;
-	esac
+	fi
 }
 
 _git_format_patch ()
@@ -1049,36 +1043,25 @@ _git_pull ()
 {
 	local cur="${COMP_WORDS[COMP_CWORD]}"
 
-	case "${COMP_WORDS[0]},$COMP_CWORD" in
-	git-pull*,1)
+	if [ "$COMP_CWORD" = 2 ]; then
 		__gitcomp "$(__git_remotes)"
-		;;
-	git,2)
-		__gitcomp "$(__git_remotes)"
-		;;
-	*)
+	else
 		local remote
 		case "${COMP_WORDS[0]}" in
 		git-pull)  remote="${COMP_WORDS[1]}" ;;
 		git)       remote="${COMP_WORDS[2]}" ;;
 		esac
 		__gitcomp "$(__git_refs "$remote")"
-		;;
-	esac
+	fi
 }
 
 _git_push ()
 {
 	local cur="${COMP_WORDS[COMP_CWORD]}"
 
-	case "${COMP_WORDS[0]},$COMP_CWORD" in
-	git-push*,1)
+	if [ "$COMP_CWORD" = 2 ]; then
 		__gitcomp "$(__git_remotes)"
-		;;
-	git,2)
-		__gitcomp "$(__git_remotes)"
-		;;
-	*)
+	else
 		case "$cur" in
 		*:*)
 			local remote
@@ -1102,8 +1085,7 @@ _git_push ()
 			__gitcomp "$(__git_refs)"
 			;;
 		esac
-		;;
-	esac
+	fi
 }
 
 _git_rebase ()
@@ -1141,7 +1123,8 @@ _git_send_email ()
 			--no-suppress-from --no-thread --quiet
 			--signed-off-by-cc --smtp-pass --smtp-server
 			--smtp-server-port --smtp-ssl --smtp-user --subject
-			--suppress-cc --suppress-from --thread --to"
+			--suppress-cc --suppress-from --thread --to
+			--validate --no-validate"
 		return
 		;;
 	esac
diff --git a/contrib/hooks/pre-auto-gc-battery b/contrib/hooks/pre-auto-gc-battery
index 0096f57b7e..b0a8caae9e 100644
--- a/contrib/hooks/pre-auto-gc-battery
+++ b/contrib/hooks/pre-auto-gc-battery
@@ -1,9 +1,9 @@
 #!/bin/sh
 #
 # An example hook script to verify if you are on battery, in case you
-# are running Linux. Called by git-gc --auto with no arguments. The hook
-# should exit with non-zero status after issuing an appropriate message
-# if it wants to stop the auto repacking.
+# are running Linux or OS X. Called by git-gc --auto with no arguments.
+# The hook should exit with non-zero status after issuing an appropriate
+# message if it wants to stop the auto repacking.
 #
 # This hook is stored in the contrib/hooks directory. Your distribution
 # may have put this somewhere else. If you want to use this hook, you
@@ -28,6 +28,10 @@ elif grep -q 'on-line' /proc/acpi/ac_adapter/AC/state 2>/dev/null
 then
 	exit 0
 elif grep -q '0x01$' /proc/apm 2>/dev/null
+then
+	exit 0
+elif test -x /usr/bin/pmset && /usr/bin/pmset -g batt |
+	grep -q "Currently drawing from 'AC Power'"
 then
 	exit 0
 fi
diff --git a/contrib/rerere-train.sh b/contrib/rerere-train.sh
new file mode 100755
index 0000000000..2cfe1b936b
--- /dev/null
+++ b/contrib/rerere-train.sh
@@ -0,0 +1,52 @@
+#!/bin/sh
+# Copyright (c) 2008, Nanako Shiraishi
+# Prime rerere database from existing merge commits
+
+me=rerere-train
+USAGE="$me rev-list-args"
+
+SUBDIRECTORY_OK=Yes
+OPTIONS_SPEC=
+. git-sh-setup
+require_work_tree
+cd_to_toplevel
+
+# Remember original branch
+branch=$(git symbolic-ref -q HEAD) ||
+original_HEAD=$(git rev-parse --verify HEAD) || {
+	echo >&2 "Not on any branch and no commit yet?"
+	exit 1
+}
+
+mkdir -p "$GIT_DIR/rr-cache" || exit
+
+git rev-list --parents "$@" |
+while read commit parent1 other_parents
+do
+	if test -z "$other_parents"
+	then
+		# Skip non-merges
+		continue
+	fi
+	git checkout -q "$parent1^0"
+	if git merge $other_parents >/dev/null 2>&1
+	then
+		# Cleanly merges
+		continue
+	fi
+	if test -s "$GIT_DIR/MERGE_RR"
+	then
+		git show -s --pretty=format:"Learning from %h %s" "$commit"
+		git rerere
+		git checkout -q $commit -- .
+		git rerere
+	fi
+	git reset -q --hard
+done
+
+if test -z "$branch"
+then
+	git checkout "$original_HEAD"
+else
+	git checkout "${branch#refs/heads/}"
+fi
diff --git a/contrib/vim/README b/contrib/vim/README
index 9e7881fea9..c487346eba 100644
--- a/contrib/vim/README
+++ b/contrib/vim/README
@@ -1,8 +1,30 @@
-To syntax highlight git's commit messages, you need to:
-  1. Copy syntax/gitcommit.vim to vim's syntax directory:
-     $ mkdir -p $HOME/.vim/syntax
-     $ cp syntax/gitcommit.vim $HOME/.vim/syntax
-  2. Auto-detect the editing of git commit files:
-     $ cat >>$HOME/.vimrc <<'EOF'
-     autocmd BufNewFile,BufRead COMMIT_EDITMSG set filetype=gitcommit
-     EOF
+Syntax highlighting for git commit messages, config files, etc. is
+included with the vim distribution as of vim 7.2, and should work
+automatically.
+
+If you have an older version of vim, you can get the latest syntax
+files from the vim project:
+
+  http://vim.svn.sourceforge.net/viewvc/vim/trunk/runtime/syntax/git.vim
+  http://vim.svn.sourceforge.net/viewvc/vim/trunk/runtime/syntax/gitcommit.vim
+  http://vim.svn.sourceforge.net/viewvc/vim/trunk/runtime/syntax/gitconfig.vim
+  http://vim.svn.sourceforge.net/viewvc/vim/trunk/runtime/syntax/gitrebase.vim
+  http://vim.svn.sourceforge.net/viewvc/vim/trunk/runtime/syntax/gitsendemail.vim
+
+To install:
+
+  1. Copy these files to vim's syntax directory $HOME/.vim/syntax
+  2. To auto-detect the editing of various git-related filetypes:
+	$ cat >>$HOME/.vim/filetype.vim <<'EOF'
+	autocmd BufNewFile,BufRead *.git/COMMIT_EDITMSG    setf gitcommit
+	autocmd BufNewFile,BufRead *.git/config,.gitconfig setf gitconfig
+	autocmd BufNewFile,BufRead git-rebase-todo         setf gitrebase
+	autocmd BufNewFile,BufRead .msg.[0-9]*
+		\ if getline(1) =~ '^From.*# This line is ignored.$' |
+		\   setf gitsendemail |
+		\ endif
+	autocmd BufNewFile,BufRead *.git/**
+		\ if getline(1) =~ '^\x\{40\}\>\|^ref: ' |
+		\   setf git |
+		\ endif
+	EOF
diff --git a/contrib/vim/syntax/gitcommit.vim b/contrib/vim/syntax/gitcommit.vim
deleted file mode 100644
index 332121b40e..0000000000
--- a/contrib/vim/syntax/gitcommit.vim
+++ /dev/null
@@ -1,18 +0,0 @@
-syn region gitLine start=/^#/ end=/$/
-syn region gitCommit start=/^# Changes to be committed:$/ end=/^#$/ contains=gitHead,gitCommitFile
-syn region gitHead contained start=/^#   (.*)/ end=/^#$/
-syn region gitChanged start=/^# Changed but not updated:/ end=/^#$/ contains=gitHead,gitChangedFile
-syn region gitUntracked start=/^# Untracked files:/ end=/^#$/ contains=gitHead,gitUntrackedFile
-
-syn match gitCommitFile contained /^#\t.*/hs=s+2
-syn match gitChangedFile contained /^#\t.*/hs=s+2
-syn match gitUntrackedFile contained /^#\t.*/hs=s+2
-
-hi def link gitLine Comment
-hi def link gitCommit Comment
-hi def link gitChanged Comment
-hi def link gitHead Comment
-hi def link gitUntracked Comment
-hi def link gitCommitFile Type
-hi def link gitChangedFile Constant
-hi def link gitUntrackedFile Constant
diff --git a/csum-file.c b/csum-file.c
index bb70c75ee1..717d29fc03 100644
--- a/csum-file.c
+++ b/csum-file.c
@@ -36,11 +36,11 @@ int sha1close(struct sha1file *f, unsigned char *result, unsigned int flags)
 	unsigned offset = f->offset;
 
 	if (offset) {
-		SHA1_Update(&f->ctx, f->buffer, offset);
+		git_SHA1_Update(&f->ctx, f->buffer, offset);
 		sha1flush(f, f->buffer, offset);
 		f->offset = 0;
 	}
-	SHA1_Final(f->buffer, &f->ctx);
+	git_SHA1_Final(f->buffer, &f->ctx);
 	if (result)
 		hashcpy(result, f->buffer);
 	if (flags & (CSUM_CLOSE | CSUM_FSYNC)) {
@@ -82,7 +82,7 @@ int sha1write(struct sha1file *f, void *buf, unsigned int count)
 		buf = (char *) buf + nr;
 		left -= nr;
 		if (!left) {
-			SHA1_Update(&f->ctx, data, offset);
+			git_SHA1_Update(&f->ctx, data, offset);
 			sha1flush(f, data, offset);
 			offset = 0;
 		}
@@ -105,7 +105,7 @@ struct sha1file *sha1fd_throughput(int fd, const char *name, struct progress *tp
 	f->tp = tp;
 	f->name = name;
 	f->do_crc = 0;
-	SHA1_Init(&f->ctx);
+	git_SHA1_Init(&f->ctx);
 	return f;
 }
 
diff --git a/csum-file.h b/csum-file.h
index 72c9487f4f..9e13342eb3 100644
--- a/csum-file.h
+++ b/csum-file.h
@@ -7,7 +7,7 @@ struct progress;
 struct sha1file {
 	int fd;
 	unsigned int offset;
-	SHA_CTX ctx;
+	git_SHA_CTX ctx;
 	off_t total;
 	struct progress *tp;
 	const char *name;
diff --git a/daemon.c b/daemon.c
index 0e026f65ec..3e5582d289 100644
--- a/daemon.c
+++ b/daemon.c
@@ -1116,13 +1116,9 @@ int main(int argc, char **argv)
 	if (strict_paths && (!ok_paths || !*ok_paths))
 		die("option --strict-paths requires a whitelist");
 
-	if (base_path) {
-		struct stat st;
-
-		if (stat(base_path, &st) || !S_ISDIR(st.st_mode))
-			die("base-path '%s' does not exist or "
-			    "is not a directory", base_path);
-	}
+	if (base_path && !is_directory(base_path))
+		die("base-path '%s' does not exist or is not a directory",
+		    base_path);
 
 	if (inetd_mode) {
 		struct sockaddr_storage ss;
diff --git a/date.c b/date.c
index 35a52576c5..950b88fdcf 100644
--- a/date.c
+++ b/date.c
@@ -402,6 +402,15 @@ static int match_multi_number(unsigned long num, char c, const char *date, char
 	return end - date;
 }
 
+/* Have we filled in any part of the time/date yet? */
+static inline int nodate(struct tm *tm)
+{
+	return tm->tm_year < 0 &&
+		tm->tm_mon < 0 &&
+		tm->tm_mday < 0 &&
+		!(tm->tm_hour | tm->tm_min | tm->tm_sec);
+}
+
 /*
  * We've seen a digit. Time? Year? Date?
  */
@@ -418,7 +427,7 @@ static int match_digit(const char *date, struct tm *tm, int *offset, int *tm_gmt
 	 * more than 8 digits. This is because we don't want to rule out
 	 * numbers like 20070606 as a YYYYMMDD date.
 	 */
-	if (num >= 100000000) {
+	if (num >= 100000000 && nodate(tm)) {
 		time_t time = num;
 		if (gmtime_r(&time, tm)) {
 			*tm_gmt = 1;
@@ -462,6 +471,13 @@ static int match_digit(const char *date, struct tm *tm, int *offset, int *tm_gmt
 		return n;
 	}
 
+	/*
+	 * Ignore lots of numerals. We took care of 4-digit years above.
+	 * Days or months must be one or two digits.
+	 */
+	if (n > 2)
+		return n;
+
 	/*
 	 * NOTE! We will give precedence to day-of-month over month or
 	 * year numbers in the 1-12 range. So 05 is always "mday 5",
@@ -488,10 +504,6 @@ static int match_digit(const char *date, struct tm *tm, int *offset, int *tm_gmt
 
 	if (num > 0 && num < 32) {
 		tm->tm_mday = num;
-	} else if (num > 1900) {
-		tm->tm_year = num - 1900;
-	} else if (num > 70) {
-		tm->tm_year = num;
 	} else if (num > 0 && num < 13) {
 		tm->tm_mon = num-1;
 	}
@@ -823,7 +835,9 @@ static const char *approxidate_digit(const char *date, struct tm *tm, int *num)
 		}
 	}
 
-	*num = number;
+	/* Accept zero-padding only for small numbers ("Dec 02", never "Dec 0002") */
+	if (date[0] != '0' || end - date <= 2)
+		*num = number;
 	return end;
 }
 
diff --git a/diff.c b/diff.c
index 9053d4d1f6..2af3a97487 100644
--- a/diff.c
+++ b/diff.c
@@ -96,32 +96,37 @@ static int parse_lldiff_command(const char *var, const char *ep, const char *val
  * to define a customized regexp to find the beginning of a function to
  * be used for hunk header lines of "diff -p" style output.
  */
-static struct funcname_pattern {
+struct funcname_pattern_entry {
 	char *name;
 	char *pattern;
-	struct funcname_pattern *next;
+	int cflags;
+};
+static struct funcname_pattern_list {
+	struct funcname_pattern_list *next;
+	struct funcname_pattern_entry e;
 } *funcname_pattern_list;
 
-static int parse_funcname_pattern(const char *var, const char *ep, const char *value)
+static int parse_funcname_pattern(const char *var, const char *ep, const char *value, int cflags)
 {
 	const char *name;
 	int namelen;
-	struct funcname_pattern *pp;
+	struct funcname_pattern_list *pp;
 
 	name = var + 5; /* "diff." */
 	namelen = ep - name;
 
 	for (pp = funcname_pattern_list; pp; pp = pp->next)
-		if (!strncmp(pp->name, name, namelen) && !pp->name[namelen])
+		if (!strncmp(pp->e.name, name, namelen) && !pp->e.name[namelen])
 			break;
 	if (!pp) {
 		pp = xcalloc(1, sizeof(*pp));
-		pp->name = xmemdupz(name, namelen);
+		pp->e.name = xmemdupz(name, namelen);
 		pp->next = funcname_pattern_list;
 		funcname_pattern_list = pp;
 	}
-	free(pp->pattern);
-	pp->pattern = xstrdup(value);
+	free(pp->e.pattern);
+	pp->e.pattern = xstrdup(value);
+	pp->e.cflags = cflags;
 	return 0;
 }
 
@@ -194,7 +199,13 @@ int git_diff_basic_config(const char *var, const char *value, void *cb)
 			if (!strcmp(ep, ".funcname")) {
 				if (!value)
 					return config_error_nonbool(var);
-				return parse_funcname_pattern(var, ep, value);
+				return parse_funcname_pattern(var, ep, value,
+					0);
+			} else if (!strcmp(ep, ".xfuncname")) {
+				if (!value)
+					return config_error_nonbool(var);
+				return parse_funcname_pattern(var, ep, value,
+					REG_EXTENDED);
 			}
 		}
 	}
@@ -1131,9 +1142,13 @@ static void show_dirstat(struct diff_options *options)
 		/*
 		 * Original minus copied is the removed material,
 		 * added is the new material.  They are both damages
-		 * made to the preimage.
+		 * made to the preimage. In --dirstat-by-file mode, count
+		 * damaged files, not damaged lines. This is done by
+		 * counting only a single damaged line per file.
 		 */
 		damage = (p->one->size - copied) + added;
+		if (DIFF_OPT_TST(options, DIRSTAT_BY_FILE) && damage > 0)
+			damage = 1;
 
 		ALLOC_GROW(dir.files, dir.nr + 1, dir.alloc);
 		dir.files[dir.nr].name = name;
@@ -1396,42 +1411,53 @@ int diff_filespec_is_binary(struct diff_filespec *one)
 	return one->is_binary;
 }
 
-static const char *funcname_pattern(const char *ident)
+static const struct funcname_pattern_entry *funcname_pattern(const char *ident)
 {
-	struct funcname_pattern *pp;
+	struct funcname_pattern_list *pp;
 
 	for (pp = funcname_pattern_list; pp; pp = pp->next)
-		if (!strcmp(ident, pp->name))
-			return pp->pattern;
+		if (!strcmp(ident, pp->e.name))
+			return &pp->e;
 	return NULL;
 }
 
-static struct builtin_funcname_pattern {
-	const char *name;
-	const char *pattern;
-} builtin_funcname_pattern[] = {
-	{ "bibtex", "\\(@[a-zA-Z]\\{1,\\}[ \t]*{\\{0,1\\}[ \t]*[^ \t\"@',\\#}{~%]*\\).*$" },
-	{ "html", "^\\s*\\(<[Hh][1-6]\\s.*>.*\\)$" },
-	{ "java", "!^[ 	]*\\(catch\\|do\\|for\\|if\\|instanceof\\|"
-			"new\\|return\\|switch\\|throw\\|while\\)\n"
-			"^[ 	]*\\(\\([ 	]*"
-			"[A-Za-z_][A-Za-z_0-9]*\\)\\{2,\\}"
-			"[ 	]*([^;]*\\)$" },
-	{ "pascal", "^\\(\\(procedure\\|function\\|constructor\\|"
-			"destructor\\|interface\\|implementation\\|"
-			"initialization\\|finalization\\)[ \t]*.*\\)$"
-			"\\|"
-			"^\\(.*=[ \t]*\\(class\\|record\\).*\\)$"
-			},
-	{ "php", "^[\t ]*\\(\\(function\\|class\\).*\\)" },
-	{ "python", "^\\s*\\(\\(class\\|def\\)\\s.*\\)$" },
-	{ "ruby", "^\\s*\\(\\(class\\|module\\|def\\)\\s.*\\)$" },
-	{ "tex", "^\\(\\\\\\(\\(sub\\)*section\\|chapter\\|part\\)\\*\\{0,1\\}{.*\\)$" },
+static const struct funcname_pattern_entry builtin_funcname_pattern[] = {
+	{ "bibtex", "(@[a-zA-Z]{1,}[ \t]*\\{{0,1}[ \t]*[^ \t\"@',\\#}{~%]*).*$",
+	  REG_EXTENDED },
+	{ "html", "^[ \t]*(<[Hh][1-6][ \t].*>.*)$", REG_EXTENDED },
+	{ "java",
+	  "!^[ \t]*(catch|do|for|if|instanceof|new|return|switch|throw|while)\n"
+	  "^[ \t]*(([ \t]*[A-Za-z_][A-Za-z_0-9]*){2,}[ \t]*\\([^;]*)$",
+	  REG_EXTENDED },
+	{ "objc",
+	  /* Negate C statements that can look like functions */
+	  "!^[ \t]*(do|for|if|else|return|switch|while)\n"
+	  /* Objective-C methods */
+	  "^[ \t]*([-+][ \t]*\\([ \t]*[A-Za-z_][A-Za-z_0-9* \t]*\\)[ \t]*[A-Za-z_].*)$\n"
+	  /* C functions */
+	  "^[ \t]*(([ \t]*[A-Za-z_][A-Za-z_0-9]*){2,}[ \t]*\\([^;]*)$\n"
+	  /* Objective-C class/protocol definitions */
+	  "^(@(implementation|interface|protocol)[ \t].*)$",
+	  REG_EXTENDED },
+	{ "pascal",
+	  "^((procedure|function|constructor|destructor|interface|"
+		"implementation|initialization|finalization)[ \t]*.*)$"
+	  "\n"
+	  "^(.*=[ \t]*(class|record).*)$",
+	  REG_EXTENDED },
+	{ "php", "^[\t ]*((function|class).*)", REG_EXTENDED },
+	{ "python", "^[ \t]*((class|def)[ \t].*)$", REG_EXTENDED },
+	{ "ruby", "^[ \t]*((class|module|def)[ \t].*)$",
+	  REG_EXTENDED },
+	{ "tex",
+	  "^(\\\\((sub)*section|chapter|part)\\*{0,1}\\{.*)$",
+	  REG_EXTENDED },
 };
 
-static const char *diff_funcname_pattern(struct diff_filespec *one)
+static const struct funcname_pattern_entry *diff_funcname_pattern(struct diff_filespec *one)
 {
-	const char *ident, *pattern;
+	const char *ident;
+	const struct funcname_pattern_entry *pe;
 	int i;
 
 	diff_filespec_check_attr(one);
@@ -1446,9 +1472,9 @@ static const char *diff_funcname_pattern(struct diff_filespec *one)
 		return funcname_pattern("default");
 
 	/* Look up custom "funcname.$ident" regexp from config. */
-	pattern = funcname_pattern(ident);
-	if (pattern)
-		return pattern;
+	pe = funcname_pattern(ident);
+	if (pe)
+		return pe;
 
 	/*
 	 * And define built-in fallback patterns here.  Note that
@@ -1456,7 +1482,7 @@ static const char *diff_funcname_pattern(struct diff_filespec *one)
 	 */
 	for (i = 0; i < ARRAY_SIZE(builtin_funcname_pattern); i++)
 		if (!strcmp(ident, builtin_funcname_pattern[i].name))
-			return builtin_funcname_pattern[i].pattern;
+			return &builtin_funcname_pattern[i];
 
 	return NULL;
 }
@@ -1493,6 +1519,10 @@ static void builtin_diff(const char *name_a,
 		b_prefix = o->b_prefix;
 	}
 
+	/* Never use a non-valid filename anywhere if at all possible */
+	name_a = DIFF_FILE_VALID(one) ? name_a : name_b;
+	name_b = DIFF_FILE_VALID(two) ? name_b : name_a;
+
 	a_one = quote_two(a_prefix, name_a + (*name_a == '/'));
 	b_two = quote_two(b_prefix, name_b + (*name_b == '/'));
 	lbl[0] = DIFF_FILE_VALID(one) ? a_one : "/dev/null";
@@ -1552,11 +1582,11 @@ static void builtin_diff(const char *name_a,
 		xdemitconf_t xecfg;
 		xdemitcb_t ecb;
 		struct emit_callback ecbdata;
-		const char *funcname_pattern;
+		const struct funcname_pattern_entry *pe;
 
-		funcname_pattern = diff_funcname_pattern(one);
-		if (!funcname_pattern)
-			funcname_pattern = diff_funcname_pattern(two);
+		pe = diff_funcname_pattern(one);
+		if (!pe)
+			pe = diff_funcname_pattern(two);
 
 		memset(&xecfg, 0, sizeof(xecfg));
 		memset(&ecbdata, 0, sizeof(ecbdata));
@@ -1568,8 +1598,8 @@ static void builtin_diff(const char *name_a,
 		xpp.flags = XDF_NEED_MINIMAL | o->xdl_opts;
 		xecfg.ctxlen = o->context;
 		xecfg.flags = XDL_EMIT_FUNCNAMES;
-		if (funcname_pattern)
-			xdiff_set_find_func(&xecfg, funcname_pattern);
+		if (pe)
+			xdiff_set_find_func(&xecfg, pe->pattern, pe->cflags);
 		if (!diffopts)
 			;
 		else if (!prefixcmp(diffopts, "--unified="))
@@ -2511,6 +2541,10 @@ int diff_opt_parse(struct diff_options *options, const char **av, int ac)
 	else if (!strcmp(arg, "--cumulative")) {
 		options->output_format |= DIFF_FORMAT_DIRSTAT;
 		DIFF_OPT_SET(options, DIRSTAT_CUMULATIVE);
+	} else if (opt_arg(arg, 0, "dirstat-by-file",
+			   &options->dirstat_percent)) {
+		options->output_format |= DIFF_FORMAT_DIRSTAT;
+		DIFF_OPT_SET(options, DIRSTAT_BY_FILE);
 	}
 	else if (!strcmp(arg, "--check"))
 		options->output_format |= DIFF_FORMAT_CHECKDIFF;
@@ -3067,7 +3101,7 @@ static void diff_summary(FILE *file, struct diff_filepair *p)
 }
 
 struct patch_id_t {
-	SHA_CTX *ctx;
+	git_SHA_CTX *ctx;
 	int patchlen;
 };
 
@@ -3095,7 +3129,7 @@ static void patch_id_consume(void *priv, char *line, unsigned long len)
 
 	new_len = remove_space(line, len);
 
-	SHA1_Update(data->ctx, line, new_len);
+	git_SHA1_Update(data->ctx, line, new_len);
 	data->patchlen += new_len;
 }
 
@@ -3104,11 +3138,11 @@ static int diff_get_patch_id(struct diff_options *options, unsigned char *sha1)
 {
 	struct diff_queue_struct *q = &diff_queued_diff;
 	int i;
-	SHA_CTX ctx;
+	git_SHA_CTX ctx;
 	struct patch_id_t data;
 	char buffer[PATH_MAX * 4 + 20];
 
-	SHA1_Init(&ctx);
+	git_SHA1_Init(&ctx);
 	memset(&data, 0, sizeof(struct patch_id_t));
 	data.ctx = &ctx;
 
@@ -3170,7 +3204,7 @@ static int diff_get_patch_id(struct diff_options *options, unsigned char *sha1)
 					len2, p->two->path,
 					len1, p->one->path,
 					len2, p->two->path);
-		SHA1_Update(&ctx, buffer, len1);
+		git_SHA1_Update(&ctx, buffer, len1);
 
 		xpp.flags = XDF_NEED_MINIMAL;
 		xecfg.ctxlen = 3;
@@ -3179,7 +3213,7 @@ static int diff_get_patch_id(struct diff_options *options, unsigned char *sha1)
 			      &xpp, &xecfg, &ecb);
 	}
 
-	SHA1_Final(sha1, &ctx);
+	git_SHA1_Final(sha1, &ctx);
 	return 0;
 }
 
diff --git a/diff.h b/diff.h
index 1ca4f46284..a49d865bd9 100644
--- a/diff.h
+++ b/diff.h
@@ -64,6 +64,7 @@ typedef void (*diff_format_fn_t)(struct diff_queue_struct *q,
 #define DIFF_OPT_RELATIVE_NAME       (1 << 17)
 #define DIFF_OPT_IGNORE_SUBMODULES   (1 << 18)
 #define DIFF_OPT_DIRSTAT_CUMULATIVE  (1 << 19)
+#define DIFF_OPT_DIRSTAT_BY_FILE     (1 << 20)
 #define DIFF_OPT_TST(opts, flag)    ((opts)->flags & DIFF_OPT_##flag)
 #define DIFF_OPT_SET(opts, flag)    ((opts)->flags |= DIFF_OPT_##flag)
 #define DIFF_OPT_CLR(opts, flag)    ((opts)->flags &= ~DIFF_OPT_##flag)
diff --git a/dir.c b/dir.c
index acf1001c4f..0131983dfb 100644
--- a/dir.c
+++ b/dir.c
@@ -382,7 +382,7 @@ static struct dir_entry *dir_entry_new(const char *pathname, int len)
 	return ent;
 }
 
-struct dir_entry *dir_add_name(struct dir_struct *dir, const char *pathname, int len)
+static struct dir_entry *dir_add_name(struct dir_struct *dir, const char *pathname, int len)
 {
 	if (cache_name_exists(pathname, len, ignore_case))
 		return NULL;
@@ -391,7 +391,7 @@ struct dir_entry *dir_add_name(struct dir_struct *dir, const char *pathname, int
 	return dir->entries[dir->nr++] = dir_entry_new(pathname, len);
 }
 
-struct dir_entry *dir_add_ignored(struct dir_struct *dir, const char *pathname, int len)
+static struct dir_entry *dir_add_ignored(struct dir_struct *dir, const char *pathname, int len)
 {
 	if (cache_name_pos(pathname, len) >= 0)
 		return NULL;
@@ -831,3 +831,23 @@ void setup_standard_excludes(struct dir_struct *dir)
 	if (excludes_file && !access(excludes_file, R_OK))
 		add_excludes_from_file(dir, excludes_file);
 }
+
+int remove_path(const char *name)
+{
+	char *slash;
+
+	if (unlink(name) && errno != ENOENT)
+		return -1;
+
+	slash = strrchr(name, '/');
+	if (slash) {
+		char *dirs = xstrdup(name);
+		slash = dirs + (slash - name);
+		do {
+			*slash = '\0';
+		} while (rmdir(dirs) && (slash = strrchr(dirs, '/')));
+		free(dirs);
+	}
+	return 0;
+}
+
diff --git a/dir.h b/dir.h
index 2df15defb6..768425af0e 100644
--- a/dir.h
+++ b/dir.h
@@ -73,7 +73,6 @@ extern void add_excludes_from_file(struct dir_struct *, const char *fname);
 extern void add_exclude(const char *string, const char *base,
 			int baselen, struct exclude_list *which);
 extern int file_exists(const char *);
-extern struct dir_entry *dir_add_name(struct dir_struct *dir, const char *pathname, int len);
 
 extern char *get_relative_cwd(char *buffer, int size, const char *dir);
 extern int is_inside_dir(const char *dir);
@@ -81,4 +80,7 @@ extern int is_inside_dir(const char *dir);
 extern void setup_standard_excludes(struct dir_struct *dir);
 extern int remove_dir_recursively(struct strbuf *path, int only_empty);
 
+/* tries to remove the path with empty directories along it, ignores ENOENT */
+extern int remove_path(const char *path);
+
 #endif
diff --git a/environment.c b/environment.c
index 0c6d11f6a0..0693cd9a42 100644
--- a/environment.c
+++ b/environment.c
@@ -80,6 +80,11 @@ int is_bare_repository(void)
 	return is_bare_repository_cfg && !get_git_work_tree();
 }
 
+int have_git_dir(void)
+{
+	return !!git_dir;
+}
+
 const char *get_git_dir(void)
 {
 	if (!git_dir)
diff --git a/fast-import.c b/fast-import.c
index ccdf2e57b0..3c035a5788 100644
--- a/fast-import.c
+++ b/fast-import.c
@@ -816,7 +816,7 @@ static void start_packfile(void)
 	int pack_fd;
 
 	snprintf(tmpfile, sizeof(tmpfile),
-		"%s/tmp_pack_XXXXXX", get_object_directory());
+		"%s/pack/tmp_pack_XXXXXX", get_object_directory());
 	pack_fd = xmkstemp(tmpfile);
 	p = xcalloc(1, sizeof(*p) + strlen(tmpfile) + 2);
 	strcpy(p->pack_name, tmpfile);
@@ -845,7 +845,7 @@ static int oecmp (const void *a_, const void *b_)
 static char *create_index(void)
 {
 	static char tmpfile[PATH_MAX];
-	SHA_CTX ctx;
+	git_SHA_CTX ctx;
 	struct sha1file *f;
 	struct object_entry **idx, **c, **last, *e;
 	struct object_entry_pool *o;
@@ -878,21 +878,21 @@ static char *create_index(void)
 	}
 
 	snprintf(tmpfile, sizeof(tmpfile),
-		"%s/tmp_idx_XXXXXX", get_object_directory());
+		"%s/pack/tmp_idx_XXXXXX", get_object_directory());
 	idx_fd = xmkstemp(tmpfile);
 	f = sha1fd(idx_fd, tmpfile);
 	sha1write(f, array, 256 * sizeof(int));
-	SHA1_Init(&ctx);
+	git_SHA1_Init(&ctx);
 	for (c = idx; c != last; c++) {
 		uint32_t offset = htonl((*c)->offset);
 		sha1write(f, &offset, 4);
 		sha1write(f, (*c)->sha1, sizeof((*c)->sha1));
-		SHA1_Update(&ctx, (*c)->sha1, 20);
+		git_SHA1_Update(&ctx, (*c)->sha1, 20);
 	}
 	sha1write(f, pack_data->sha1, sizeof(pack_data->sha1));
 	sha1close(f, NULL, CSUM_FSYNC);
 	free(idx);
-	SHA1_Final(pack_data->sha1, &ctx);
+	git_SHA1_Final(pack_data->sha1, &ctx);
 	return tmpfile;
 }
 
@@ -1033,15 +1033,15 @@ static int store_object(
 	unsigned char hdr[96];
 	unsigned char sha1[20];
 	unsigned long hdrlen, deltalen;
-	SHA_CTX c;
+	git_SHA_CTX c;
 	z_stream s;
 
 	hdrlen = sprintf((char*)hdr,"%s %lu", typename(type),
 		(unsigned long)dat->len) + 1;
-	SHA1_Init(&c);
-	SHA1_Update(&c, hdr, hdrlen);
-	SHA1_Update(&c, dat->buf, dat->len);
-	SHA1_Final(sha1, &c);
+	git_SHA1_Init(&c);
+	git_SHA1_Update(&c, hdr, hdrlen);
+	git_SHA1_Update(&c, dat->buf, dat->len);
+	git_SHA1_Final(sha1, &c);
 	if (sha1out)
 		hashcpy(sha1out, sha1);
 
diff --git a/git-compat-util.h b/git-compat-util.h
index db2836fbde..e20b1e858c 100644
--- a/git-compat-util.h
+++ b/git-compat-util.h
@@ -85,6 +85,7 @@
 #undef _XOPEN_SOURCE
 #include <grp.h>
 #define _XOPEN_SOURCE 600
+#include "compat/cygwin.h"
 #else
 #undef _ALL_SOURCE /* AIX 5.3L defines a struct list with _ALL_SOURCE. */
 #include <grp.h>
@@ -154,10 +155,7 @@ extern void die(const char *err, ...) NORETURN __attribute__((format (printf, 1,
 extern int error(const char *err, ...) __attribute__((format (printf, 1, 2)));
 extern void warning(const char *err, ...) __attribute__((format (printf, 1, 2)));
 
-extern void set_usage_routine(void (*routine)(const char *err) NORETURN);
 extern void set_die_routine(void (*routine)(const char *err, va_list params) NORETURN);
-extern void set_error_routine(void (*routine)(const char *err, va_list params));
-extern void set_warn_routine(void (*routine)(const char *warn, va_list params));
 
 extern int prefixcmp(const char *str, const char *prefix);
 extern time_t tm_to_time_t(const struct tm *tm);
diff --git a/git-gui/.gitattributes b/git-gui/.gitattributes
new file mode 100644
index 0000000000..f96112d47f
--- /dev/null
+++ b/git-gui/.gitattributes
@@ -0,0 +1,3 @@
+*           encoding=US-ASCII
+git-gui.sh  encoding=UTF-8
+/po/*.po    encoding=UTF-8
diff --git a/git-gui/git-gui.sh b/git-gui/git-gui.sh
index 10d8a4422f..4085e8fea5 100755
--- a/git-gui/git-gui.sh
+++ b/git-gui/git-gui.sh
@@ -521,6 +521,19 @@ proc kill_file_process {fd} {
 	}
 }
 
+proc gitattr {path attr default} {
+	if {[catch {set r [git check-attr $attr -- $path]}]} {
+		set r unspecified
+	} else {
+		set r [join [lrange [split $r :] 2 end] :]
+		regsub {^ } $r {} r
+	}
+	if {$r eq {unspecified}} {
+		return $default
+	}
+	return $r
+}
+
 proc sq {value} {
 	regsub -all ' $value "'\\''" value
 	return "'$value'"
@@ -665,6 +678,7 @@ set default_config(merge.verbosity) 2
 set default_config(user.name) {}
 set default_config(user.email) {}
 
+set default_config(gui.encoding) [encoding system]
 set default_config(gui.matchtrackingbranch) false
 set default_config(gui.pruneduringfetch) false
 set default_config(gui.trustmtime) false
@@ -948,10 +962,32 @@ blame {
 }
 citool {
 	enable_option singlecommit
+	enable_option retcode
 
 	disable_option multicommit
 	disable_option branch
 	disable_option transport
+
+	while {[llength $argv] > 0} {
+		set a [lindex $argv 0]
+		switch -- $a {
+		--amend {
+			enable_option initialamend
+		}
+		--nocommit {
+			enable_option nocommit
+			enable_option nocommitmsg
+		}
+		--commitmsg {
+			disable_option nocommitmsg
+		}
+		default {
+			break
+		}
+		}
+
+		set argv [lrange $argv 1 end]
+	}
 }
 }
 
@@ -1023,8 +1059,12 @@ set current_branch {}
 set is_detached 0
 set current_diff_path {}
 set is_3way_diff 0
+set is_conflict_diff 0
 set selected_commit_type new
 
+set nullid "0000000000000000000000000000000000000000"
+set nullid2 "0000000000000000000000000000000000000001"
+
 ######################################################################
 ##
 ## task management
@@ -1105,6 +1145,20 @@ proc PARENT {} {
 	return $empty_tree
 }
 
+proc force_amend {} {
+	global selected_commit_type
+	global HEAD PARENT MERGE_HEAD commit_type
+
+	repository_state newType newHEAD newMERGE_HEAD
+	set HEAD $newHEAD
+	set PARENT $newHEAD
+	set MERGE_HEAD $newMERGE_HEAD
+	set commit_type $newType
+
+	set selected_commit_type amend
+	do_select_commit_type
+}
+
 proc rescan {after {honor_trustmtime 1}} {
 	global HEAD PARENT MERGE_HEAD commit_type
 	global ui_index ui_workdir ui_comm
@@ -1131,6 +1185,7 @@ proc rescan {after {honor_trustmtime 1}} {
 		|| [string trim [$ui_comm get 0.0 end]] eq {})} {
 		if {[string match amend* $commit_type]} {
 		} elseif {[load_message GITGUI_MSG]} {
+		} elseif {[run_prepare_commit_msg_hook]} {
 		} elseif {[load_message MERGE_MSG]} {
 		} elseif {[load_message SQUASH_MSG]} {
 		}
@@ -1230,6 +1285,70 @@ proc load_message {file} {
 	return 0
 }
 
+proc run_prepare_commit_msg_hook {} {
+	global pch_error
+
+	# prepare-commit-msg requires PREPARE_COMMIT_MSG exist.  From git-gui
+	# it will be .git/MERGE_MSG (merge), .git/SQUASH_MSG (squash), or an
+	# empty file but existant file.
+
+	set fd_pcm [open [gitdir PREPARE_COMMIT_MSG] a]
+
+	if {[file isfile [gitdir MERGE_MSG]]} {
+		set pcm_source "merge"
+		set fd_mm [open [gitdir MERGE_MSG] r]
+		puts -nonewline $fd_pcm [read $fd_mm]
+		close $fd_mm
+	} elseif {[file isfile [gitdir SQUASH_MSG]]} {
+		set pcm_source "squash"
+		set fd_sm [open [gitdir SQUASH_MSG] r]
+		puts -nonewline $fd_pcm [read $fd_sm]
+		close $fd_sm
+	} else {
+		set pcm_source ""
+	}
+
+	close $fd_pcm
+
+	set fd_ph [githook_read prepare-commit-msg \
+			[gitdir PREPARE_COMMIT_MSG] $pcm_source]
+	if {$fd_ph eq {}} {
+		catch {file delete [gitdir PREPARE_COMMIT_MSG]}
+		return 0;
+	}
+
+	ui_status [mc "Calling prepare-commit-msg hook..."]
+	set pch_error {}
+
+	fconfigure $fd_ph -blocking 0 -translation binary -eofchar {}
+	fileevent $fd_ph readable \
+		[list prepare_commit_msg_hook_wait $fd_ph]
+
+	return 1;
+}
+
+proc prepare_commit_msg_hook_wait {fd_ph} {
+	global pch_error
+
+	append pch_error [read $fd_ph]
+	fconfigure $fd_ph -blocking 1
+	if {[eof $fd_ph]} {
+		if {[catch {close $fd_ph}]} {
+			ui_status [mc "Commit declined by prepare-commit-msg hook."]
+			hook_failed_popup prepare-commit-msg $pch_error
+			catch {file delete [gitdir PREPARE_COMMIT_MSG]}
+			exit 1
+		} else {
+			load_message PREPARE_COMMIT_MSG
+		}
+		set pch_error {}
+		catch {file delete [gitdir PREPARE_COMMIT_MSG]}
+		return
+        }
+	fconfigure $fd_ph -blocking 0
+	catch {file delete [gitdir PREPARE_COMMIT_MSG]}
+}
+
 proc read_diff_index {fd after} {
 	global buf_rdi
 
@@ -1751,11 +1870,19 @@ proc do_gitk {revs} {
 }
 
 set is_quitting 0
+set ret_code    1
 
-proc do_quit {} {
+proc terminate_me {win} {
+	global ret_code
+	if {$win ne {.}} return
+	exit $ret_code
+}
+
+proc do_quit {{rc {1}}} {
 	global ui_comm is_quitting repo_config commit_type
 	global GITGUI_BCK_exists GITGUI_BCK_i
 	global ui_comm_spell
+	global ret_code
 
 	if {$is_quitting} return
 	set is_quitting 1
@@ -1810,6 +1937,7 @@ proc do_quit {} {
 		}
 	}
 
+	set ret_code $rc
 	destroy .
 }
 
@@ -1951,19 +2079,21 @@ proc toggle_or_diff {w x y} {
 	$ui_index tag remove in_sel 0.0 end
 	$ui_workdir tag remove in_sel 0.0 end
 
-	# Do not stage files with conflicts
+	# Determine the state of the file
 	if {[info exists file_states($path)]} {
 		set state [lindex $file_states($path) 0]
 	} else {
 		set state {__}
 	}
 
-	if {[string first {U} $state] >= 0} {
-		set col 1
-	}
-
 	# Restage the file, or simply show the diff
 	if {$col == 0 && $y > 1} {
+		# Conflicts need special handling
+		if {[string first {U} $state] >= 0} {
+			merge_stage_workdir $path $w $lno
+			return
+		}
+
 		if {[string index $state 1] eq {O}} {
 			set mmask {}
 		} else {
@@ -2212,26 +2342,36 @@ if {[is_enabled branch]} {
 
 # -- Commit Menu
 #
+proc commit_btn_caption {} {
+	if {[is_enabled nocommit]} {
+		return [mc "Done"]
+	} else {
+		return [mc Commit@@verb]
+	}
+}
+
 if {[is_enabled multicommit] || [is_enabled singlecommit]} {
 	menu .mbar.commit
 
-	.mbar.commit add radiobutton \
-		-label [mc "New Commit"] \
-		-command do_select_commit_type \
-		-variable selected_commit_type \
-		-value new
-	lappend disable_on_lock \
-		[list .mbar.commit entryconf [.mbar.commit index last] -state]
+	if {![is_enabled nocommit]} {
+		.mbar.commit add radiobutton \
+			-label [mc "New Commit"] \
+			-command do_select_commit_type \
+			-variable selected_commit_type \
+			-value new
+		lappend disable_on_lock \
+			[list .mbar.commit entryconf [.mbar.commit index last] -state]
 
-	.mbar.commit add radiobutton \
-		-label [mc "Amend Last Commit"] \
-		-command do_select_commit_type \
-		-variable selected_commit_type \
-		-value amend
-	lappend disable_on_lock \
-		[list .mbar.commit entryconf [.mbar.commit index last] -state]
+		.mbar.commit add radiobutton \
+			-label [mc "Amend Last Commit"] \
+			-command do_select_commit_type \
+			-variable selected_commit_type \
+			-value amend
+		lappend disable_on_lock \
+			[list .mbar.commit entryconf [.mbar.commit index last] -state]
 
-	.mbar.commit add separator
+		.mbar.commit add separator
+	}
 
 	.mbar.commit add command -label [mc Rescan] \
 		-command ui_do_rescan \
@@ -2273,11 +2413,13 @@ if {[is_enabled multicommit] || [is_enabled singlecommit]} {
 
 	.mbar.commit add separator
 
-	.mbar.commit add command -label [mc "Sign Off"] \
-		-command do_signoff \
-		-accelerator $M1T-S
+	if {![is_enabled nocommit]} {
+		.mbar.commit add command -label [mc "Sign Off"] \
+			-command do_signoff \
+			-accelerator $M1T-S
+	}
 
-	.mbar.commit add command -label [mc Commit@@verb] \
+	.mbar.commit add command -label [commit_btn_caption] \
 		-command do_commit \
 		-accelerator $M1T-Return
 	lappend disable_on_lock \
@@ -2601,19 +2743,23 @@ pack .vpane.lower.commarea.buttons.incall -side top -fill x
 lappend disable_on_lock \
 	{.vpane.lower.commarea.buttons.incall conf -state}
 
-button .vpane.lower.commarea.buttons.signoff -text [mc "Sign Off"] \
-	-command do_signoff
-pack .vpane.lower.commarea.buttons.signoff -side top -fill x
+if {![is_enabled nocommit]} {
+	button .vpane.lower.commarea.buttons.signoff -text [mc "Sign Off"] \
+		-command do_signoff
+	pack .vpane.lower.commarea.buttons.signoff -side top -fill x
+}
 
-button .vpane.lower.commarea.buttons.commit -text [mc Commit@@verb] \
+button .vpane.lower.commarea.buttons.commit -text [commit_btn_caption] \
 	-command do_commit
 pack .vpane.lower.commarea.buttons.commit -side top -fill x
 lappend disable_on_lock \
 	{.vpane.lower.commarea.buttons.commit conf -state}
 
-button .vpane.lower.commarea.buttons.push -text [mc Push] \
-	-command do_push_anywhere
-pack .vpane.lower.commarea.buttons.push -side top -fill x
+if {![is_enabled nocommit]} {
+	button .vpane.lower.commarea.buttons.push -text [mc Push] \
+		-command do_push_anywhere
+	pack .vpane.lower.commarea.buttons.push -side top -fill x
+}
 
 # -- Commit Message Buffer
 #
@@ -2621,20 +2767,24 @@ frame .vpane.lower.commarea.buffer
 frame .vpane.lower.commarea.buffer.header
 set ui_comm .vpane.lower.commarea.buffer.t
 set ui_coml .vpane.lower.commarea.buffer.header.l
-radiobutton .vpane.lower.commarea.buffer.header.new \
-	-text [mc "New Commit"] \
-	-command do_select_commit_type \
-	-variable selected_commit_type \
-	-value new
-lappend disable_on_lock \
-	[list .vpane.lower.commarea.buffer.header.new conf -state]
-radiobutton .vpane.lower.commarea.buffer.header.amend \
-	-text [mc "Amend Last Commit"] \
-	-command do_select_commit_type \
-	-variable selected_commit_type \
-	-value amend
-lappend disable_on_lock \
-	[list .vpane.lower.commarea.buffer.header.amend conf -state]
+
+if {![is_enabled nocommit]} {
+	radiobutton .vpane.lower.commarea.buffer.header.new \
+		-text [mc "New Commit"] \
+		-command do_select_commit_type \
+		-variable selected_commit_type \
+		-value new
+	lappend disable_on_lock \
+		[list .vpane.lower.commarea.buffer.header.new conf -state]
+	radiobutton .vpane.lower.commarea.buffer.header.amend \
+		-text [mc "Amend Last Commit"] \
+		-command do_select_commit_type \
+		-variable selected_commit_type \
+		-value amend
+	lappend disable_on_lock \
+		[list .vpane.lower.commarea.buffer.header.amend conf -state]
+}
+
 label $ui_coml \
 	-anchor w \
 	-justify left
@@ -2652,8 +2802,11 @@ proc trace_commit_type {varname args} {
 }
 trace add variable commit_type write trace_commit_type
 pack $ui_coml -side left -fill x
-pack .vpane.lower.commarea.buffer.header.amend -side right
-pack .vpane.lower.commarea.buffer.header.new -side right
+
+if {![is_enabled nocommit]} {
+	pack .vpane.lower.commarea.buffer.header.amend -side right
+	pack .vpane.lower.commarea.buffer.header.new -side right
+}
 
 text $ui_comm -background white -foreground black \
 	-borderwidth 1 \
@@ -2860,6 +3013,14 @@ proc create_common_diff_popup {ctxm} {
 		-command {incr_font_size font_diff 1}
 	lappend diff_actions [list $ctxm entryconf [$ctxm index last] -state]
 	$ctxm add separator
+	set emenu $ctxm.enc
+	menu $emenu
+	build_encoding_menu $emenu [list force_diff_encoding]
+	$ctxm add cascade \
+		-label [mc "Encoding"] \
+		-menu $emenu
+	lappend diff_actions [list $ctxm entryconf [$ctxm index last] -state]
+	$ctxm add separator
 	$ctxm add command -label [mc "Options..."] \
 		-command do_options
 }
@@ -3191,7 +3352,20 @@ lock_index begin-read
 if {![winfo ismapped .]} {
 	wm deiconify .
 }
-after 1 do_rescan
+after 1 {
+	if {[is_enabled initialamend]} {
+		force_amend
+	} else {
+		do_rescan
+	}
+
+	if {[is_enabled nocommitmsg]} {
+		$ui_comm configure -state disabled -background gray
+	}
+}
 if {[is_enabled multicommit]} {
 	after 1000 hint_gc
 }
+if {[is_enabled retcode]} {
+	bind . <Destroy> {+terminate_me %W}
+}
diff --git a/git-gui/lib/blame.tcl b/git-gui/lib/blame.tcl
index 827c85d67f..eb61374d2d 100644
--- a/git-gui/lib/blame.tcl
+++ b/git-gui/lib/blame.tcl
@@ -256,9 +256,16 @@ constructor new {i_commit i_path i_jump} {
 	$w.ctxm add command \
 		-label [mc "Copy Commit"] \
 		-command [cb _copycommit]
+	$w.ctxm add separator
+	menu $w.ctxm.enc
+	build_encoding_menu $w.ctxm.enc [cb _setencoding]
+	$w.ctxm add cascade \
+		-label [mc "Encoding"] \
+		-menu $w.ctxm.enc
 	$w.ctxm add command \
 		-label [mc "Do Full Copy Detection"] \
 		-command [cb _fullcopyblame]
+	$w.ctxm add separator
 	$w.ctxm add command \
 		-label [mc "Show History Context"] \
 		-command [cb _gitkcommit]
@@ -399,7 +406,10 @@ method _load {jump} {
 	} else {
 		set fd [git_read cat-file blob "$commit:$path"]
 	}
-	fconfigure $fd -blocking 0 -translation lf -encoding binary
+	fconfigure $fd \
+		-blocking 0 \
+		-translation lf \
+		-encoding [get_path_encoding $path]
 	fileevent $fd readable [cb _read_file $fd $jump]
 	set current_fd $fd
 }
@@ -508,7 +518,7 @@ method _exec_blame {cur_w cur_d options cur_s} {
 	}
 	lappend options -- $path
 	set fd [eval git_read --nice blame $options]
-	fconfigure $fd -blocking 0 -translation lf -encoding binary
+	fconfigure $fd -blocking 0 -translation lf -encoding utf-8
 	fileevent $fd readable [cb _read_blame $fd $cur_w $cur_d]
 	set current_fd $fd
 	set blame_lines 0
@@ -788,6 +798,16 @@ method _click {cur_w pos} {
 	_showcommit $this $cur_w $lno
 }
 
+method _setencoding {enc} {
+	force_path_encoding $path $enc
+	_load $this [list \
+		$highlight_column \
+		$highlight_line \
+		[lindex [$w_file xview] 0] \
+		[lindex [$w_file yview] 0] \
+		]
+}
+
 method _load_commit {cur_w cur_d pos} {
 	upvar #0 $cur_d line_data
 	set lno [lindex [split [$cur_w index $pos] .] 0]
@@ -881,12 +901,6 @@ method _showcommit {cur_w lno} {
 				set enc [tcl_encoding $enc]
 				if {$enc ne {}} {
 					set msg [encoding convertfrom $enc $msg]
-					set author_name [encoding convertfrom $enc $author_name]
-					set committer_name [encoding convertfrom $enc $committer_name]
-					set header($cmit,author) $author_name
-					set header($cmit,committer) $committer_name
-					set header($cmit,summary) \
-					[encoding convertfrom $enc $header($cmit,summary)]
 				}
 				set msg [string trim $msg]
 			}
@@ -942,9 +956,20 @@ method _format_offset_date {base offset} {
 }
 
 method _gitkcommit {} {
+	global nullid
+
 	set dat [_get_click_amov_info $this]
 	if {$dat ne {}} {
 		set cmit [lindex $dat 0]
+
+		# If the line belongs to the working copy, use HEAD instead
+		if {$cmit eq $nullid} {
+			if {[catch {set cmit [git rev-parse --verify HEAD]} err]} {
+				error_popup [strcat [mc "Cannot find HEAD commit:"] "\n\n$err"]
+				return;
+			}
+		}
+
 		set radius [get_config gui.blamehistoryctx]
 		set cmdline [list --select-commit=$cmit]
 
@@ -981,12 +1006,20 @@ method _gitkcommit {} {
 }
 
 method _blameparent {} {
+	global nullid
+
 	set dat [_get_click_amov_info $this]
 	if {$dat ne {}} {
 		set cmit [lindex $dat 0]
 		set new_path [lindex $dat 1]
 
-		if {[catch {set cparent [git rev-parse --verify "$cmit^"]}]} {
+		# Allow using Blame Parent on lines modified in the working copy
+		if {$cmit eq $nullid} {
+			set parent_ref "HEAD"
+		} else {
+			set parent_ref "$cmit^"
+		}
+		if {[catch {set cparent [git rev-parse --verify $parent_ref]} err]} {
 			error_popup [strcat [mc "Cannot find parent commit:"] "\n\n$err"]
 			return;
 		}
@@ -996,8 +1029,12 @@ method _blameparent {} {
 		# Generate a diff between the commit and its parent,
 		# and use the hunks to update the line number.
 		# Request zero context to simplify calculations.
-		if {[catch {set fd [eval git_read diff-tree \
-				--unified=0 $cparent $cmit $new_path]} err]} {
+		if {$cmit eq $nullid} {
+			set diffcmd [list diff-index --unified=0 $cparent -- $new_path]
+		} else {
+			set diffcmd [list diff-tree --unified=0 $cparent $cmit -- $new_path]
+		}
+		if {[catch {set fd [eval git_read $diffcmd]} err]} {
 			$status stop [mc "Unable to display parent"]
 			error_popup [strcat [mc "Error loading diff:"] "\n\n$err"]
 			return
diff --git a/git-gui/lib/commit.tcl b/git-gui/lib/commit.tcl
index 2977315624..334514996a 100644
--- a/git-gui/lib/commit.tcl
+++ b/git-gui/lib/commit.tcl
@@ -168,7 +168,7 @@ File %s cannot be committed by this program.
 		}
 		}
 	}
-	if {!$files_ready && ![string match *merge $curType]} {
+	if {!$files_ready && ![string match *merge $curType] && ![is_enabled nocommit]} {
 		info_popup [mc "No changes to commit.
 
 You must stage at least 1 file before you can commit.
@@ -177,6 +177,8 @@ You must stage at least 1 file before you can commit.
 		return
 	}
 
+	if {[is_enabled nocommitmsg]} { do_quit 0 }
+
 	# -- A message is required.
 	#
 	set msg [string trim [$ui_comm get 1.0 end]]
@@ -212,6 +214,8 @@ A good commit message has the following format:
 	puts $msg_wt $msg
 	close $msg_wt
 
+	if {[is_enabled nocommit]} { do_quit 0 }
+
 	# -- Run the pre-commit hook.
 	#
 	set fd_ph [githook_read pre-commit]
@@ -410,7 +414,7 @@ A rescan will be automatically started now.
 		set ::GITGUI_BCK_exists 0
 	}
 
-	if {[is_enabled singlecommit]} do_quit
+	if {[is_enabled singlecommit]} { do_quit 0 }
 
 	# -- Update in memory status
 	#
diff --git a/git-gui/lib/diff.tcl b/git-gui/lib/diff.tcl
index a30c80a935..abe502d971 100644
--- a/git-gui/lib/diff.tcl
+++ b/git-gui/lib/diff.tcl
@@ -40,6 +40,15 @@ proc reshow_diff {} {
 	}
 }
 
+proc force_diff_encoding {enc} {
+	global current_diff_path
+	
+	if {$current_diff_path ne {}} {
+		force_path_encoding $current_diff_path $enc
+		reshow_diff
+	}
+}
+
 proc handle_empty_diff {} {
 	global current_diff_path file_states file_lists
 
@@ -60,9 +69,9 @@ A rescan will be automatically started to find other files which may have the sa
 	rescan ui_ready 0
 }
 
-proc show_diff {path w {lno {}} {scroll_pos {}}} {
+proc show_diff {path w {lno {}} {scroll_pos {}} {callback {}}} {
 	global file_states file_lists
-	global is_3way_diff diff_active repo_config
+	global is_3way_diff is_conflict_diff diff_active repo_config
 	global ui_diff ui_index ui_workdir
 	global current_diff_path current_diff_side current_diff_header
 	global current_diff_queue
@@ -83,36 +92,42 @@ proc show_diff {path w {lno {}} {scroll_pos {}}} {
 
 	set s $file_states($path)
 	set m [lindex $s 0]
+	set is_conflict_diff 0
 	set current_diff_path $path
 	set current_diff_side $w
 	set current_diff_queue {}
 	ui_status [mc "Loading diff of %s..." [escape_path $path]]
 
+	set cont_info [list $scroll_pos $callback]
+
 	if {[string first {U} $m] >= 0} {
-		merge_load_stages $path [list show_unmerged_diff $scroll_pos]
+		merge_load_stages $path [list show_unmerged_diff $cont_info]
 	} elseif {$m eq {_O}} {
-		show_other_diff $path $w $m $scroll_pos
+		show_other_diff $path $w $m $cont_info
 	} else {
-		start_show_diff $scroll_pos
+		start_show_diff $cont_info
 	}
 }
 
-proc show_unmerged_diff {scroll_pos} {
+proc show_unmerged_diff {cont_info} {
 	global current_diff_path current_diff_side
-	global merge_stages ui_diff
+	global merge_stages ui_diff is_conflict_diff
 	global current_diff_queue
 
 	if {$merge_stages(2) eq {}} {
+		set is_conflict_diff 1
 		lappend current_diff_queue \
 			[list "LOCAL: deleted\nREMOTE:\n" d======= \
 			    [list ":1:$current_diff_path" ":3:$current_diff_path"]]
 	} elseif {$merge_stages(3) eq {}} {
+		set is_conflict_diff 1
 		lappend current_diff_queue \
 			[list "REMOTE: deleted\nLOCAL:\n" d======= \
 			    [list ":1:$current_diff_path" ":2:$current_diff_path"]]
 	} elseif {[lindex $merge_stages(1) 0] eq {120000}
 		|| [lindex $merge_stages(2) 0] eq {120000}
 		|| [lindex $merge_stages(3) 0] eq {120000}} {
+		set is_conflict_diff 1
 		lappend current_diff_queue \
 			[list "LOCAL:\n" d======= \
 			    [list ":1:$current_diff_path" ":2:$current_diff_path"]]
@@ -120,14 +135,14 @@ proc show_unmerged_diff {scroll_pos} {
 			[list "REMOTE:\n" d======= \
 			    [list ":1:$current_diff_path" ":3:$current_diff_path"]]
 	} else {
-		start_show_diff $scroll_pos
+		start_show_diff $cont_info
 		return
 	}
 
-	advance_diff_queue $scroll_pos
+	advance_diff_queue $cont_info
 }
 
-proc advance_diff_queue {scroll_pos} {
+proc advance_diff_queue {cont_info} {
 	global current_diff_queue ui_diff
 
 	set item [lindex $current_diff_queue 0]
@@ -137,10 +152,10 @@ proc advance_diff_queue {scroll_pos} {
 	$ui_diff insert end [lindex $item 0] [lindex $item 1]
 	$ui_diff conf -state disabled
 
-	start_show_diff $scroll_pos [lindex $item 2]
+	start_show_diff $cont_info [lindex $item 2]
 }
 
-proc show_other_diff {path w m scroll_pos} {
+proc show_other_diff {path w m cont_info} {
 	global file_states file_lists
 	global is_3way_diff diff_active repo_config
 	global ui_diff ui_index ui_workdir
@@ -165,7 +180,9 @@ proc show_other_diff {path w m scroll_pos} {
 				}
 				file {
 					set fd [open $path r]
-					fconfigure $fd -eofchar {}
+					fconfigure $fd \
+						-eofchar {} \
+						-encoding [get_path_encoding $path]
 					set content [read $fd $max_sz]
 					close $fd
 					set sz [file size $path]
@@ -217,16 +234,21 @@ proc show_other_diff {path w m scroll_pos} {
 		$ui_diff conf -state disabled
 		set diff_active 0
 		unlock_index
+		set scroll_pos [lindex $cont_info 0]
 		if {$scroll_pos ne {}} {
 			update
 			$ui_diff yview moveto $scroll_pos
 		}
 		ui_ready
+		set callback [lindex $cont_info 1]
+		if {$callback ne {}} {
+			eval $callback
+		}
 		return
 	}
 }
 
-proc start_show_diff {scroll_pos {add_opts {}}} {
+proc start_show_diff {cont_info {add_opts {}}} {
 	global file_states file_lists
 	global is_3way_diff diff_active repo_config
 	global ui_diff ui_index ui_workdir
@@ -279,14 +301,14 @@ proc start_show_diff {scroll_pos {add_opts {}}} {
 	set ::current_diff_inheader 1
 	fconfigure $fd \
 		-blocking 0 \
-		-encoding binary \
-		-translation binary
-	fileevent $fd readable [list read_diff $fd $scroll_pos]
+		-encoding [get_path_encoding $path] \
+		-translation lf
+	fileevent $fd readable [list read_diff $fd $cont_info]
 }
 
-proc read_diff {fd scroll_pos} {
+proc read_diff {fd cont_info} {
 	global ui_diff diff_active
-	global is_3way_diff current_diff_header
+	global is_3way_diff is_conflict_diff current_diff_header
 	global current_diff_queue
 
 	$ui_diff conf -state normal
@@ -334,6 +356,7 @@ proc read_diff {fd scroll_pos} {
 			{--} {set tags d_--}
 			{++} {
 				if {[regexp {^\+\+([<>]{7} |={7})} $line _g op]} {
+					set is_conflict_diff 1
 					set line [string replace $line 0 1 {  }]
 					set tags d$op
 				} else {
@@ -353,6 +376,7 @@ proc read_diff {fd scroll_pos} {
 			{-} {set tags d_-}
 			{+} {
 				if {[regexp {^\+([<>]{7} |={7})} $line _g op]} {
+					set is_conflict_diff 1
 					set line [string replace $line 0 0 { }]
 					set tags d$op
 				} else {
@@ -377,12 +401,13 @@ proc read_diff {fd scroll_pos} {
 		close $fd
 
 		if {$current_diff_queue ne {}} {
-			advance_diff_queue $scroll_pos
+			advance_diff_queue $cont_info
 			return
 		}
 
 		set diff_active 0
 		unlock_index
+		set scroll_pos [lindex $cont_info 0]
 		if {$scroll_pos ne {}} {
 			update
 			$ui_diff yview moveto $scroll_pos
@@ -392,6 +417,10 @@ proc read_diff {fd scroll_pos} {
 		if {[$ui_diff index end] eq {2.0}} {
 			handle_empty_diff
 		}
+		set callback [lindex $cont_info 1]
+		if {$callback ne {}} {
+			eval $callback
+		}
 	}
 }
 
@@ -432,8 +461,9 @@ proc apply_hunk {x y} {
 	}
 
 	if {[catch {
+		set enc [get_path_encoding $current_diff_path]
 		set p [eval git_write $apply_cmd]
-		fconfigure $p -translation binary -encoding binary
+		fconfigure $p -translation binary -encoding $enc
 		puts -nonewline $p $current_diff_header
 		puts -nonewline $p [$ui_diff get $s_lno $e_lno]
 		close $p} err]} {
@@ -601,8 +631,9 @@ proc apply_line {x y} {
 	set patch "@@ -$hln,$n +$hln,[eval expr $n $sign 1] @@\n$patch"
 
 	if {[catch {
+		set enc [get_path_encoding $current_diff_path]
 		set p [eval git_write $apply_cmd]
-		fconfigure $p -translation binary -encoding binary
+		fconfigure $p -translation binary -encoding $enc
 		puts -nonewline $p $current_diff_header
 		puts -nonewline $p $patch
 		close $p} err]} {
diff --git a/git-gui/lib/encoding.tcl b/git-gui/lib/encoding.tcl
index 7f06b0d47f..32668fc9c6 100644
--- a/git-gui/lib/encoding.tcl
+++ b/git-gui/lib/encoding.tcl
@@ -206,7 +206,7 @@ set encoding_aliases {
     { ISO-8859-16 iso-ir-226 ISO_8859-16:2001 ISO_8859-16 latin10 l10 }
     { GBK CP936 MS936 windows-936 }
     { JIS_Encoding csJISEncoding }
-    { Shift_JIS MS_Kanji csShiftJIS }
+    { Shift_JIS MS_Kanji csShiftJIS ShiftJIS Shift-JIS }
     { Extended_UNIX_Code_Packed_Format_for_Japanese csEUCPkdFmtJapanese
       EUC-JP }
     { Extended_UNIX_Code_Fixed_Width_for_Japanese csEUCFixWidJapanese }
@@ -240,37 +240,227 @@ set encoding_aliases {
     { Big5 csBig5 }
 }
 
-proc tcl_encoding {enc} {
-    global encoding_aliases
-    set names [encoding names]
-    set lcnames [string tolower $names]
-    set enc [string tolower $enc]
-    set i [lsearch -exact $lcnames $enc]
-    if {$i < 0} {
-	# look for "isonnn" instead of "iso-nnn" or "iso_nnn"
-	if {[regsub {^iso[-_]} $enc iso encx]} {
-	    set i [lsearch -exact $lcnames $encx]
-	}
-    }
-    if {$i < 0} {
-	foreach l $encoding_aliases {
-	    set ll [string tolower $l]
-	    if {[lsearch -exact $ll $enc] < 0} continue
-	    # look through the aliases for one that tcl knows about
-	    foreach e $ll {
-		set i [lsearch -exact $lcnames $e]
-		if {$i < 0} {
-		    if {[regsub {^iso[-_]} $e iso ex]} {
-			set i [lsearch -exact $lcnames $ex]
-		    }
-		}
-		if {$i >= 0} break
-	    }
-	    break
-	}
-    }
-    if {$i >= 0} {
-	return [lindex $names $i]
-    }
-    return {}
+set encoding_groups {
+    {"" ""
+	{"Unicode" UTF-8}
+	{"Western" ISO-8859-1}}
+    {we "West European"
+	{"Western" ISO-8859-15 CP-437 CP-850 MacRoman CP-1252 Windows-1252}
+	{"Celtic" ISO-8859-14}
+	{"Greek" ISO-8859-14 ISO-8859-7 CP-737 CP-869 MacGreek CP-1253 Windows-1253}
+	{"Icelandic" MacIceland MacIcelandic CP-861}
+	{"Nordic" ISO-8859-10 CP-865}
+	{"Portuguese" CP-860}
+	{"South European" ISO-8859-3}}
+    {ee "East European"
+	{"Baltic" CP-775 ISO-8859-4 ISO-8859-13 CP-1257 Windows-1257}
+	{"Central European" CP-852 ISO-8859-2 MacCE CP-1250 Windows-1250}
+	{"Croatian" MacCroatian}
+	{"Cyrillic" CP-855 ISO-8859-5 ISO-IR-111 KOI8-R MacCyrillic CP-1251 Windows-1251}
+	{"Russian" CP-866}
+	{"Ukrainian" KOI8-U MacUkraine MacUkrainian}
+	{"Romanian" ISO-8859-16 MacRomania MacRomanian}}
+    {ea "East Asian"
+	{"Generic" ISO-2022}
+	{"Chinese Simplified" GB2312 GB1988 GB12345 GB2312-RAW GBK EUC-CN GB18030 HZ ISO-2022-CN}
+	{"Chinese Traditional" Big5 Big5-HKSCS EUC-TW CP-950}
+	{"Japanese" EUC-JP ISO-2022-JP Shift-JIS JIS-0212 JIS-0208 JIS-0201 CP-932 MacJapan}
+	{"Korean" EUC-KR UHC JOHAB ISO-2022-KR CP-949 KSC5601}}
+    {sa "SE & SW Asian"
+	{"Armenian" ARMSCII-8}
+	{"Georgian" GEOSTD8}
+	{"Thai" TIS-620 ISO-8859-11 CP-874 Windows-874 MacThai}
+	{"Turkish" CP-857 CP857 ISO-8859-9 MacTurkish CP-1254 Windows-1254}
+	{"Vietnamese" TCVN VISCII VPS CP-1258 Windows-1258}
+	{"Hindi" MacDevanagari}
+	{"Gujarati" MacGujarati}
+	{"Gurmukhi" MacGurmukhi}}
+    {me "Middle Eastern"
+	{"Arabic" ISO-8859-6 Windows-1256 CP-1256 CP-864 MacArabic}
+	{"Farsi" MacFarsi}
+	{"Hebrew" ISO-8859-8-I Windows-1255 CP-1255 ISO-8859-8 CP-862 MacHebrew}}
+    {mi "Misc"
+	{"7-bit" ASCII}
+	{"16-bit" Unicode}
+	{"Legacy" CP-863 EBCDIC}
+	{"Symbol" Symbol Dingbats MacDingbats MacCentEuro}}
+}
+
+proc build_encoding_table {} {
+	global encoding_aliases encoding_lookup_table
+
+	# Prepare the lookup list; cannot use lsort -nocase because
+	# of compatibility issues with older Tcl (e.g. in msysgit)
+	set names [list]
+	foreach item [encoding names] {
+		lappend names [list [string tolower $item] $item]
+	}
+	set names [lsort -ascii -index 0 $names]
+	# neither can we use lsearch -index
+	set lnames [list]
+	foreach item $names {
+		lappend lnames [lindex $item 0]
+	}
+
+	foreach grp $encoding_aliases {
+		set target {}
+		foreach item $grp {
+			set i [lsearch -sorted -ascii $lnames \
+					[string tolower $item]]
+			if {$i >= 0} {
+				set target [lindex $names $i 1]
+				break
+			}
+		}
+		if {$target eq {}} continue
+		foreach item $grp {
+			set encoding_lookup_table([string tolower $item]) $target
+		}
+	}
+
+	foreach item $names {
+		set encoding_lookup_table([lindex $item 0]) [lindex $item 1]
+	}
+}
+
+proc tcl_encoding {enc} {
+	global encoding_lookup_table
+	if {$enc eq {}} {
+		return {}
+	}
+	if {![info exists encoding_lookup_table]} {
+		build_encoding_table
+	}
+	set enc [string tolower $enc]
+	if {![info exists encoding_lookup_table($enc)]} {
+		# look for "isonnn" instead of "iso-nnn" or "iso_nnn"
+		if {[regsub {^(iso|cp|ibm|jis)[-_]} $enc {\1} encx]} {
+			set enc $encx
+		}
+	}
+	if {[info exists encoding_lookup_table($enc)]} {
+		return $encoding_lookup_table($enc)
+	} else {
+		return {}
+	}
+}
+
+proc force_path_encoding {path enc} {
+	global path_encoding_overrides last_encoding_override
+
+	set enc [tcl_encoding $enc]
+	if {$enc eq {}} {
+		catch { unset last_encoding_override }
+		catch { unset path_encoding_overrides($path) }
+	} else {
+		set last_encoding_override $enc
+		if {$path ne {}} {
+			set path_encoding_overrides($path) $enc
+		}
+	}
+}
+
+proc get_path_encoding {path} {
+	global path_encoding_overrides last_encoding_override
+
+	if {[info exists last_encoding_override]} {
+		set tcl_enc $last_encoding_override
+	} else {
+		set tcl_enc [tcl_encoding [get_config gui.encoding]]
+	}
+	if {$tcl_enc eq {}} {
+		set tcl_enc [encoding system]
+	}
+	if {$path ne {}} {
+		if {[info exists path_encoding_overrides($path)]} {
+			set enc2 $path_encoding_overrides($path)
+		} else {
+			set enc2 [tcl_encoding [gitattr $path encoding $tcl_enc]]
+		}
+		if {$enc2 ne {}} {
+			set tcl_enc $enc2
+		}
+	}
+	return $tcl_enc
+}
+
+proc build_encoding_submenu {parent grp cmd} {
+	global used_encodings
+
+	set mid [lindex $grp 0]
+	set gname [mc [lindex $grp 1]]
+
+	set smenu {}
+	foreach subset [lrange $grp 2 end] {
+		set name [mc [lindex $subset 0]]
+
+		foreach enc [lrange $subset 1 end] {
+			set tcl_enc [tcl_encoding $enc]
+			if {$tcl_enc eq {}} continue
+
+			if {$smenu eq {}} {
+				if {$mid eq {}} {
+					set smenu $parent
+				} else {
+					set smenu "$parent.$mid"
+					menu $smenu
+					$parent add cascade \
+						-label $gname \
+						-menu $smenu
+				}
+			}
+
+			if {$name ne {}} {
+				set lbl "$name ($enc)"
+			} else {
+				set lbl $enc
+			}
+			$smenu add command \
+				-label $lbl \
+				-command [concat $cmd [list $tcl_enc]]
+
+			lappend used_encodings $tcl_enc
+		}
+	}
+}
+
+proc popup_btn_menu {m b} {
+	tk_popup $m [winfo pointerx $b] [winfo pointery $b]
+}
+
+proc build_encoding_menu {emenu cmd {nodef 0}} {
+	$emenu configure -postcommand \
+		[list do_build_encoding_menu $emenu $cmd $nodef]
+}
+
+proc do_build_encoding_menu {emenu cmd {nodef 0}} {
+	global used_encodings encoding_groups
+
+	$emenu configure -postcommand {}
+
+	if {!$nodef} {
+		$emenu add command \
+			-label [mc "Default"] \
+			-command [concat $cmd [list {}]]
+	}
+	set sysenc [encoding system]
+	$emenu add command \
+		-label [mc "System (%s)" $sysenc] \
+		-command [concat $cmd [list $sysenc]]
+
+	# Main encoding tree
+	set used_encodings [list identity]
+	$emenu add separator
+	foreach grp $encoding_groups {
+		build_encoding_submenu $emenu $grp $cmd
+	}
+
+	# Add unclassified encodings
+	set unused_grp [list [mc Other]]
+	foreach enc [encoding names] {
+		if {[lsearch -exact $used_encodings $enc] < 0} {
+			lappend unused_grp $enc
+		}
+	}
+	build_encoding_submenu $emenu [list other [mc Other] $unused_grp] $cmd
 }
diff --git a/git-gui/lib/mergetool.tcl b/git-gui/lib/mergetool.tcl
index 79c58bc7bc..6ab5701d93 100644
--- a/git-gui/lib/mergetool.tcl
+++ b/git-gui/lib/mergetool.tcl
@@ -5,24 +5,51 @@ proc merge_resolve_one {stage} {
 	global current_diff_path
 
 	switch -- $stage {
-		1 { set target [mc "the base version"] }
-		2 { set target [mc "this branch"] }
-		3 { set target [mc "the other branch"] }
+		1 { set targetquestion [mc "Force resolution to the base version?"] }
+		2 { set targetquestion [mc "Force resolution to this branch?"] }
+		3 { set targetquestion [mc "Force resolution to the other branch?"] }
 	}
 
-	set op_question [mc "Force resolution to %s?
-Note that the diff shows only conflicting changes.
+	set op_question [strcat $targetquestion "\n" \
+[mc "Note that the diff shows only conflicting changes.
 
 %s will be overwritten.
 
 This operation can be undone only by restarting the merge." \
-		$target [short_path $current_diff_path]]
+		[short_path $current_diff_path]]]
 
 	if {[ask_popup $op_question] eq {yes}} {
 		merge_load_stages $current_diff_path [list merge_force_stage $stage]
 	}
 }
 
+proc merge_stage_workdir {path w lno} {
+	global current_diff_path diff_active
+
+	if {$diff_active} return
+
+	if {$path ne $current_diff_path} {
+		show_diff $path $w $lno {} [list do_merge_stage_workdir $path]
+	} else {
+		do_merge_stage_workdir $path
+	}
+}
+
+proc do_merge_stage_workdir {path} {
+	global current_diff_path is_conflict_diff
+
+	if {$path ne $current_diff_path} return;
+
+	if {$is_conflict_diff} {
+		if {[ask_popup [mc "File %s seems to have unresolved conflicts, still stage?" \
+				[short_path $path]]] ne {yes}} {
+			return
+		}
+	}
+
+	merge_add_resolution $path
+}
+
 proc merge_add_resolution {path} {
 	global current_diff_path ui_workdir
 
diff --git a/git-gui/lib/option.tcl b/git-gui/lib/option.tcl
index 9b865f6a75..c80c939878 100644
--- a/git-gui/lib/option.tcl
+++ b/git-gui/lib/option.tcl
@@ -1,6 +1,28 @@
 # git-gui options editor
 # Copyright (C) 2006, 2007 Shawn Pearce
 
+proc config_check_encodings {} {
+	global repo_config_new global_config_new
+
+	set enc $global_config_new(gui.encoding)
+	if {$enc eq {}} {
+		set global_config_new(gui.encoding) [encoding system]
+	} elseif {[tcl_encoding $enc] eq {}} {
+		error_popup [mc "Invalid global encoding '%s'" $enc]
+		return 0
+	}
+
+	set enc $repo_config_new(gui.encoding)
+	if {$enc eq {}} {
+		set repo_config_new(gui.encoding) [encoding system]
+	} elseif {[tcl_encoding $enc] eq {}} {
+		error_popup [mc "Invalid repo encoding '%s'" $enc]
+		return 0
+	}
+
+	return 1
+}
+
 proc save_config {} {
 	global default_config font_descs
 	global repo_config global_config
@@ -130,6 +152,7 @@ proc do_options {} {
 		{i-1..99 gui.diffcontext {mc "Number of Diff Context Lines"}}
 		{i-0..99 gui.commitmsgwidth {mc "Commit Message Text Width"}}
 		{t gui.newbranchtemplate {mc "New Branch Name Template"}}
+		{c gui.encoding {mc "Default File Contents Encoding"}}
 		} {
 		set type [lindex $option 0]
 		set name [lindex $option 1]
@@ -159,6 +182,7 @@ proc do_options {} {
 				pack $w.$f.$optid.v -side right -anchor e -padx 5
 				pack $w.$f.$optid -side top -anchor w -fill x
 			}
+			c -
 			t {
 				frame $w.$f.$optid
 				label $w.$f.$optid.l -text "$text:"
@@ -171,6 +195,16 @@ proc do_options {} {
 				pack $w.$f.$optid.v -side left -anchor w \
 					-fill x -expand 1 \
 					-padx 5
+				if {$type eq {c}} {
+					menu $w.$f.$optid.m
+					build_encoding_menu $w.$f.$optid.m \
+						[list set ${f}_config_new($name)] 1
+					button $w.$f.$optid.b \
+						-text [mc "Change"] \
+						-command [list popup_btn_menu \
+							$w.$f.$optid.m $w.$f.$optid.b]
+					pack $w.$f.$optid.b -side left -anchor w
+				}
 				pack $w.$f.$optid -side top -anchor w -fill x
 			}
 			}
@@ -275,6 +309,7 @@ proc do_restore_defaults {} {
 }
 
 proc do_save_config {w} {
+	if {![config_check_encodings]} return
 	if {[catch {save_config} err]} {
 		error_popup [strcat [mc "Failed to completely save options:"] "\n\n$err"]
 	}
diff --git a/git-gui/po/de.po b/git-gui/po/de.po
index fa43947ad0..793cca1e79 100644
--- a/git-gui/po/de.po
+++ b/git-gui/po/de.po
@@ -7,8 +7,8 @@ msgid ""
 msgstr ""
 "Project-Id-Version: git-gui\n"
 "Report-Msgid-Bugs-To: \n"
-"POT-Creation-Date: 2008-08-02 08:58+0200\n"
-"PO-Revision-Date: 2008-08-02 09:09+0200\n"
+"POT-Creation-Date: 2008-09-13 10:20+0200\n"
+"PO-Revision-Date: 2008-09-13 10:24+0200\n"
 "Last-Translator: Christian Stimming <stimming@tuhh.de>\n"
 "Language-Team: German\n"
 "MIME-Version: 1.0\n"
@@ -110,7 +110,15 @@ msgstr "Teilweise bereitgestellt zum Eintragen"
 msgid "Staged for commit, missing"
 msgstr "Bereitgestellt zum Eintragen, fehlend"
 
-#: git-gui.sh:1597
+#: git-gui.sh:1658
+msgid "File type changed, not staged"
+msgstr "Dateityp geändert, nicht bereitgestellt"
+
+#: git-gui.sh:1659
+msgid "File type changed, staged"
+msgstr "Dateityp geändert, bereitgestellt"
+
+#: git-gui.sh:1661
 msgid "Untracked, not staged"
 msgstr "Nicht unter Versionskontrolle, nicht bereitgestellt"
 
@@ -396,15 +404,7 @@ msgstr "Alle kopieren"
 msgid "File:"
 msgstr "Datei:"
 
-#: git-gui.sh:2589
-msgid "Apply/Reverse Hunk"
-msgstr "Kontext anwenden/umkehren"
-
-#: git-gui.sh:2696
-msgid "Apply/Reverse Line"
-msgstr "Zeile anwenden/umkehren"
-
-#: git-gui.sh:2711
+#: git-gui.sh:2834
 msgid "Refresh"
 msgstr "Aktualisieren"
 
@@ -416,7 +416,35 @@ msgstr "Schriftgröße verkleinern"
 msgid "Increase Font Size"
 msgstr "Schriftgröße vergrößern"
 
-#: git-gui.sh:2646
+#: git-gui.sh:2870
+msgid "Apply/Reverse Hunk"
+msgstr "Kontext anwenden/umkehren"
+
+#: git-gui.sh:2875
+msgid "Apply/Reverse Line"
+msgstr "Zeile anwenden/umkehren"
+
+#: git-gui.sh:2885
+msgid "Run Merge Tool"
+msgstr "Zusammenführungswerkzeug"
+
+#: git-gui.sh:2890
+msgid "Use Remote Version"
+msgstr "Entfernte Version benutzen"
+
+#: git-gui.sh:2894
+msgid "Use Local Version"
+msgstr "Lokale Version benutzen"
+
+#: git-gui.sh:2898
+msgid "Revert To Base"
+msgstr "Ursprüngliche Version benutzen"
+
+#: git-gui.sh:2906
+msgid "Stage Working Copy"
+msgstr "Arbeitskopie bereitstellen"
+
+#: git-gui.sh:2925
 msgid "Unstage Hunk From Commit"
 msgstr "Kontext aus Bereitstellung herausnehmen"
 
@@ -498,7 +526,15 @@ msgstr "Version kopieren"
 msgid "Do Full Copy Detection"
 msgstr "Volle Kopie-Erkennung"
 
-#: lib/blame.tcl:388
+#: lib/blame.tcl:263
+msgid "Show History Context"
+msgstr "Historien-Kontext anzeigen"
+
+#: lib/blame.tcl:266
+msgid "Blame Parent Commit"
+msgstr "Elternversion annotieren"
+
+#: lib/blame.tcl:394
 #, tcl-format
 msgid "Reading %s..."
 msgstr "%s lesen..."
@@ -547,7 +583,19 @@ msgstr "Eintragender:"
 msgid "Original File:"
 msgstr "Ursprüngliche Datei:"
 
-#: lib/blame.tcl:925
+#: lib/blame.tcl:990
+msgid "Cannot find parent commit:"
+msgstr "Elternversion kann nicht gefunden werden:"
+
+#: lib/blame.tcl:1001
+msgid "Unable to display parent"
+msgstr "Elternversion kann nicht angezeigt werden"
+
+#: lib/blame.tcl:1002 lib/diff.tcl:191
+msgid "Error loading diff:"
+msgstr "Fehler beim Laden des Vergleichs:"
+
+#: lib/blame.tcl:1142
 msgid "Originally By:"
 msgstr "Ursprünglich von:"
 
@@ -1494,11 +1542,7 @@ msgstr "Git-Projektarchiv (Unterprojekt)"
 msgid "* Binary file (not showing content)."
 msgstr "* Binärdatei (Inhalt wird nicht angezeigt)"
 
-#: lib/diff.tcl:185
-msgid "Error loading diff:"
-msgstr "Fehler beim Laden des Vergleichs:"
-
-#: lib/diff.tcl:303
+#: lib/diff.tcl:313
 msgid "Failed to unstage selected hunk."
 msgstr ""
 "Fehler beim Herausnehmen des gewählten Kontexts aus der Bereitstellung."
@@ -1586,6 +1630,15 @@ msgstr ""
 msgid "Do Nothing"
 msgstr "Nichts tun"
 
+#: lib/index.tcl:419
+msgid "Reverting selected files"
+msgstr "Änderungen in gewählten Dateien verwerfen"
+
+#: lib/index.tcl:423
+#, tcl-format
+msgid "Reverting %s"
+msgstr "Änderungen in %s verwerfen"
+
 #: lib/merge.tcl:13
 msgid ""
 "Cannot merge while amending.\n"
@@ -1730,6 +1783,96 @@ msgstr "Abbruch fehlgeschlagen."
 msgid "Abort completed.  Ready."
 msgstr "Abbruch durchgeführt. Bereit."
 
+#: lib/mergetool.tcl:14
+msgid "Force resolution to the base version?"
+msgstr "Konflikt durch Basisversion ersetzen?"
+
+#: lib/mergetool.tcl:15
+msgid "Force resolution to this branch?"
+msgstr "Konflikt durch diesen Zweig ersetzen?"
+
+#: lib/mergetool.tcl:16
+msgid "Force resolution to the other branch?"
+msgstr "Konflikt durch anderen Zweig ersetzen?"
+
+#: lib/mergetool.tcl:20
+#, tcl-format
+msgid ""
+"Note that the diff shows only conflicting changes.\n"
+"\n"
+"%s will be overwritten.\n"
+"\n"
+"This operation can be undone only by restarting the merge."
+msgstr ""
+"Hinweis: Der Vergleich zeigt nur konfliktverursachende Änderungen an.\n"
+"\n"
+"»%s« wird überschrieben.\n"
+"\n"
+"Diese Operation kann nur rückgängig gemacht werden, wenn die\n"
+"Zusammenführung erneut gestartet wird."
+
+#: lib/mergetool.tcl:32
+#, tcl-format
+msgid "Adding resolution for %s"
+msgstr "Auflösung hinzugefügt für %s"
+
+#: lib/mergetool.tcl:119
+msgid "Cannot resolve deletion or link conflicts using a tool"
+msgstr ""
+"Konflikte durch gelöschte Dateien oder symbolische Links können nicht durch "
+"das Zusamenführungswerkzeug gelöst werden."
+
+#: lib/mergetool.tcl:124
+msgid "Conflict file does not exist"
+msgstr "Konflikt-Datei existiert nicht"
+
+#: lib/mergetool.tcl:236
+#, tcl-format
+msgid "Not a GUI merge tool: '%s'"
+msgstr "Kein GUI Zusammenführungswerkzeug: »%s«"
+
+#: lib/mergetool.tcl:240
+#, tcl-format
+msgid "Unsupported merge tool '%s'"
+msgstr "Unbekanntes Zusammenführungswerkzeug: »%s«"
+
+#: lib/mergetool.tcl:275
+msgid "Merge tool is already running, terminate it?"
+msgstr "Zusammenführungswerkzeug läuft bereits. Soll es abgebrochen werden?"
+
+#: lib/mergetool.tcl:295
+#, tcl-format
+msgid ""
+"Error retrieving versions:\n"
+"%s"
+msgstr ""
+"Fehler beim Abrufen der Dateiversionen:\n"
+"%s"
+
+#: lib/mergetool.tcl:315
+#, tcl-format
+msgid ""
+"Could not start the merge tool:\n"
+"\n"
+"%s"
+msgstr ""
+"Zusammenführungswerkzeug konnte nicht gestartet werden:\n"
+"\n"
+"%s"
+
+#: lib/mergetool.tcl:319
+msgid "Running merge tool..."
+msgstr "Zusammenführungswerkzeug starten..."
+
+#: lib/mergetool.tcl:347 lib/mergetool.tcl:363
+msgid "Merge tool failed."
+msgstr "Zusammenführungswerkzeug fehlgeschlagen."
+
+#: lib/mergetool.tcl:353
+#, tcl-format
+msgid "File %s unchanged, still accept as resolved?"
+msgstr "Datei »%s« unverändert. Trotzdem Konflikt als gelöst akzeptieren?"
+
 #: lib/option.tcl:95
 msgid "Restore Defaults"
 msgstr "Voreinstellungen wiederherstellen"
@@ -1767,7 +1910,11 @@ msgstr "Ausführlichkeit der Zusammenführen-Meldungen"
 msgid "Show Diffstat After Merge"
 msgstr "Vergleichsstatistik nach Zusammenführen anzeigen"
 
-#: lib/option.tcl:123
+#: lib/option.tcl:122
+msgid "Use Merge Tool"
+msgstr "Zusammenführungswerkzeug"
+
+#: lib/option.tcl:124
 msgid "Trust File Modification Timestamps"
 msgstr "Auf Dateiänderungsdatum verlassen"
 
@@ -1788,6 +1935,10 @@ msgid "Minimum Letters To Blame Copy On"
 msgstr "Mindestzahl Zeichen für Kopie-Annotieren"
 
 #: lib/option.tcl:128
+msgid "Blame History Context Radius (days)"
+msgstr "Anzahl Tage für Historien-Kontext"
+
+#: lib/option.tcl:129
 msgid "Number of Diff Context Lines"
 msgstr "Anzahl der Kontextzeilen beim Vergleich"
 
diff --git a/git-rebase--interactive.sh b/git-rebase--interactive.sh
index edb6ec6ed0..bdec43c3f6 100755
--- a/git-rebase--interactive.sh
+++ b/git-rebase--interactive.sh
@@ -65,6 +65,16 @@ output () {
 	esac
 }
 
+run_pre_rebase_hook () {
+	if test -x "$GIT_DIR/hooks/pre-rebase"
+	then
+		"$GIT_DIR/hooks/pre-rebase" ${1+"$@"} || {
+			echo >&2 "The pre-rebase hook refused to rebase."
+			exit 1
+		}
+	fi
+}
+
 require_clean_work_tree () {
 	# test if working tree is dirty
 	git rev-parse --verify HEAD > /dev/null &&
@@ -304,23 +314,28 @@ do_next () {
 
 		mark_action_done
 		make_squash_message $sha1 > "$MSG"
+		failed=f
+		author_script=$(get_author_ident_from_commit HEAD)
+		output git reset --soft HEAD^
+		pick_one -n $sha1 || failed=t
 		case "$(peek_next_command)" in
 		squash|s)
 			EDIT_COMMIT=
 			USE_OUTPUT=output
+			MSG_OPT=-F
+			MSG_FILE="$MSG"
 			cp "$MSG" "$SQUASH_MSG"
 			;;
 		*)
 			EDIT_COMMIT=-e
 			USE_OUTPUT=
+			MSG_OPT=
+			MSG_FILE=
 			rm -f "$SQUASH_MSG" || exit
+			cp "$MSG" "$GIT_DIR"/SQUASH_MSG
+			rm -f "$GIT_DIR"/MERGE_MSG || exit
 			;;
 		esac
-
-		failed=f
-		author_script=$(get_author_ident_from_commit HEAD)
-		output git reset --soft HEAD^
-		pick_one -n $sha1 || failed=t
 		echo "$author_script" > "$DOTEST"/author-script
 		if test $failed = f
 		then
@@ -329,7 +344,7 @@ do_next () {
 			GIT_AUTHOR_NAME="$GIT_AUTHOR_NAME" \
 			GIT_AUTHOR_EMAIL="$GIT_AUTHOR_EMAIL" \
 			GIT_AUTHOR_DATE="$GIT_AUTHOR_DATE" \
-			$USE_OUTPUT git commit --no-verify -F "$MSG" $EDIT_COMMIT || failed=t
+			$USE_OUTPUT git commit --no-verify $MSG_OPT "$MSG_FILE" $EDIT_COMMIT || failed=t
 		fi
 		if test $failed = t
 		then
@@ -507,6 +522,7 @@ first and then run 'git rebase --continue' again."
 		;;
 	--)
 		shift
+		run_pre_rebase_hook ${1+"$@"}
 		test $# -eq 1 -o $# -eq 2 || usage
 		test -d "$DOTEST" &&
 			die "Interactive rebase already started"
diff --git a/git-rebase.sh b/git-rebase.sh
index 528b604cd5..a30d40c005 100755
--- a/git-rebase.sh
+++ b/git-rebase.sh
@@ -144,6 +144,16 @@ is_interactive () {
 	done && test -n "$1"
 }
 
+run_pre_rebase_hook () {
+	if test -x "$GIT_DIR/hooks/pre-rebase"
+	then
+		"$GIT_DIR/hooks/pre-rebase" ${1+"$@"} || {
+			echo >&2 "The pre-rebase hook refused to rebase."
+			exit 1
+		}
+	fi
+}
+
 test -f "$GIT_DIR"/rebase-apply/applying &&
 	die 'It looks like git-am is in progress. Cannot rebase.'
 
@@ -320,13 +330,7 @@ onto_name=${newbase-"$upstream_name"}
 onto=$(git rev-parse --verify "${onto_name}^0") || exit
 
 # If a hook exists, give it a chance to interrupt
-if test -x "$GIT_DIR/hooks/pre-rebase"
-then
-	"$GIT_DIR/hooks/pre-rebase" ${1+"$@"} || {
-		echo >&2 "The pre-rebase hook refused to rebase."
-		exit 1
-	}
-fi
+run_pre_rebase_hook ${1+"$@"}
 
 # If the branch to rebase is given, that is the branch we will rebase
 # $branch_name -- branch being rebased, or HEAD (already detached)
diff --git a/git-send-email.perl b/git-send-email.perl
index d2fd899076..bdbfac6625 100755
--- a/git-send-email.perl
+++ b/git-send-email.perl
@@ -39,75 +39,40 @@ package main;
 sub usage {
 	print <<EOT;
 git send-email [options] <file | directory>...
-Options:
-   --from         Specify the "From:" line of the email to be sent.
 
-   --to           Specify the primary "To:" line of the email.
+  Composing:
+    --from                  <str>  * Email From:
+    --to                    <str>  * Email To:
+    --cc                    <str>  * Email Cc:
+    --bcc                   <str>  * Email Bcc:
+    --subject               <str>  * Email "Subject:"
+    --in-reply-to           <str>  * Email "In-Reply-To:"
+    --compose                      * Open an editor for introduction.
 
-   --cc           Specify an initial "Cc:" list for the entire series
-                  of emails.
+  Sending:
+    --envelope-sender       <str>  * Email envelope sender.
+    --smtp-server       <str:int>  * Outgoing SMTP server to use. The port
+                                     is optional. Default 'localhost'.
+    --smtp-server-port      <int>  * Outgoing SMTP server port.
+    --smtp-user             <str>  * Username for SMTP-AUTH.
+    --smtp-pass             <str>  * Password for SMTP-AUTH; not necessary.
+    --smtp-encryption       <str>  * tls or ssl; anything else disables.
+    --smtp-ssl                     * Deprecated. Use '--smtp-encryption ssl'.
 
-   --cc-cmd       Specify a command to execute per file which adds
-                  per file specific cc address entries
+  Automating:
+    --identity              <str>  * Use the sendemail.<id> options.
+    --cc-cmd                <str>  * Email Cc: via `<str> \$patch_path`
+    --suppress-cc           <str>  * author, self, sob, cccmd, all.
+    --[no-]signed-off-by-cc        * Send to Cc: and Signed-off-by:
+                                     addresses. Default on.
+    --[no-]suppress-from           * Send to self. Default off.
+    --[no-]chain-reply-to          * Chain In-Reply-To: fields. Default on.
+    --[no-]thread                  * Use In-Reply-To: field. Default on.
 
-   --bcc          Specify a list of email addresses that should be Bcc:
-		  on all the emails.
-
-   --compose      Use \$GIT_EDITOR, core.editor, \$EDITOR, or \$VISUAL to edit
-		  an introductory message for the patch series.
-
-   --subject      Specify the initial "Subject:" line.
-                  Only necessary if --compose is also set.  If --compose
-		  is not set, this will be prompted for.
-
-   --in-reply-to  Specify the first "In-Reply-To:" header line.
-                  Only used if --compose is also set.  If --compose is not
-		  set, this will be prompted for.
-
-   --chain-reply-to If set, the replies will all be to the previous
-                  email sent, rather than to the first email sent.
-                  Defaults to on.
-
-   --signed-off-cc Automatically add email addresses that appear in
-                 Signed-off-by: or Cc: lines to the cc: list. Defaults to on.
-
-   --identity     The configuration identity, a subsection to prioritise over
-                  the default section.
-
-   --smtp-server  If set, specifies the outgoing SMTP server to use.
-                  Defaults to localhost.  Port number can be specified here with
-                  hostname:port format or by using --smtp-server-port option.
-
-   --smtp-server-port Specify a port on the outgoing SMTP server to connect to.
-
-   --smtp-user    The username for SMTP-AUTH.
-
-   --smtp-pass    The password for SMTP-AUTH.
-
-   --smtp-encryption Specify 'tls' for STARTTLS encryption, or 'ssl' for SSL.
-                  Any other value disables the feature.
-
-   --smtp-ssl     Synonym for '--smtp-encryption=ssl'.  Deprecated.
-
-   --suppress-cc  Suppress the specified category of auto-CC.  The category
-		  can be one of 'author' for the patch author, 'self' to
-		  avoid copying yourself, 'sob' for Signed-off-by lines,
-		  'cccmd' for the output of the cccmd, or 'all' to suppress
-		  all of these.
-
-   --suppress-from Suppress sending emails to yourself. Defaults to off.
-
-   --thread       Specify that the "In-Reply-To:" header should be set on all
-                  emails. Defaults to on.
-
-   --quiet	  Make git-send-email less verbose.  One line per email
-                  should be all that is output.
-
-   --dry-run	  Do everything except actually send the emails.
-
-   --envelope-sender	Specify the envelope sender used to send the emails.
-
-   --no-validate	Don't perform any sanity checks on patches.
+  Administering:
+    --quiet                        * Output one line of info per email.
+    --dry-run                      * Don't actually send the emails.
+    --[no-]validate                * Perform patch sanity checks. Default on.
 
 EOT
 	exit(1);
@@ -186,17 +151,19 @@ if ($@) {
 my ($quiet, $dry_run) = (0, 0);
 
 # Variables with corresponding config settings
-my ($thread, $chain_reply_to, $suppress_from, $signed_off_cc, $cc_cmd);
+my ($thread, $chain_reply_to, $suppress_from, $signed_off_by_cc, $cc_cmd);
 my ($smtp_server, $smtp_server_port, $smtp_authuser, $smtp_encryption);
 my ($identity, $aliasfiletype, @alias_files, @smtp_host_parts);
-my ($no_validate);
+my ($validate);
 my (@suppress_cc);
 
 my %config_bool_settings = (
     "thread" => [\$thread, 1],
     "chainreplyto" => [\$chain_reply_to, 1],
     "suppressfrom" => [\$suppress_from, undef],
-    "signedoffcc" => [\$signed_off_cc, undef],
+    "signedoffbycc" => [\$signed_off_by_cc, undef],
+    "signedoffcc" => [\$signed_off_by_cc, undef],      # Deprecated
+    "validate" => [\$validate, 1],
 );
 
 my %config_settings = (
@@ -259,11 +226,11 @@ my $rc = GetOptions("sender|from=s" => \$sender,
 		    "cc-cmd=s" => \$cc_cmd,
 		    "suppress-from!" => \$suppress_from,
 		    "suppress-cc=s" => \@suppress_cc,
-		    "signed-off-cc|signed-off-by-cc!" => \$signed_off_cc,
+		    "signed-off-cc|signed-off-by-cc!" => \$signed_off_by_cc,
 		    "dry-run" => \$dry_run,
 		    "envelope-sender=s" => \$envelope_sender,
 		    "thread!" => \$thread,
-		    "no-validate" => \$no_validate,
+		    "validate!" => \$validate,
 	 );
 
 unless ($rc) {
@@ -335,7 +302,7 @@ if ($suppress_cc{'all'}) {
 
 # If explicit old-style ones are specified, they trump --suppress-cc.
 $suppress_cc{'self'} = $suppress_from if defined $suppress_from;
-$suppress_cc{'sob'} = !$signed_off_cc if defined $signed_off_cc;
+$suppress_cc{'sob'} = !$signed_off_by_cc if defined $signed_off_by_cc;
 
 # Debugging, print out the suppressions.
 if (0) {
@@ -416,7 +383,7 @@ for my $f (@ARGV) {
 	}
 }
 
-if (!$no_validate) {
+if ($validate) {
 	foreach my $f (@files) {
 		unless (-p $f) {
 			my $error = validate_patch($f);
diff --git a/git-stash.sh b/git-stash.sh
index d799c76378..b9ace99704 100755
--- a/git-stash.sh
+++ b/git-stash.sh
@@ -144,17 +144,16 @@ show_stash () {
 	then
 		flags=--stat
 	fi
-	s=$(git rev-parse --revs-only --no-flags --default $ref_stash "$@")
 
-	w_commit=$(git rev-parse --verify "$s") &&
-	b_commit=$(git rev-parse --verify "$s^") &&
+	w_commit=$(git rev-parse --verify --default $ref_stash "$@") &&
+	b_commit=$(git rev-parse --verify "$w_commit^") &&
 	git diff $flags $b_commit $w_commit
 }
 
 apply_stash () {
 	git update-index -q --refresh &&
 	git diff-files --quiet --ignore-submodules ||
-		die 'Cannot restore on top of a dirty state'
+		die 'Cannot apply to a dirty working tree, please stage your changes'
 
 	unstash_index=
 	case "$1" in
@@ -169,7 +168,7 @@ apply_stash () {
 
 	# stash records the work tree, and is a merge between the
 	# base commit (first parent) and the index tree (second parent).
-	s=$(git rev-parse --revs-only --no-flags --default $ref_stash "$@") &&
+	s=$(git rev-parse --verify --default $ref_stash "$@") &&
 	w_tree=$(git rev-parse --verify "$s:") &&
 	b_tree=$(git rev-parse --verify "$s^1:") &&
 	i_tree=$(git rev-parse --verify "$s^2:") ||
@@ -229,7 +228,7 @@ drop_stash () {
 		shift
 	fi
 	# Verify supplied argument looks like a stash entry
-	s=$(git rev-parse --revs-only --no-flags "$@") &&
+	s=$(git rev-parse --verify "$@") &&
 	git rev-parse --verify "$s:"   > /dev/null 2>&1 &&
 	git rev-parse --verify "$s^1:" > /dev/null 2>&1 &&
 	git rev-parse --verify "$s^2:" > /dev/null 2>&1 ||
diff --git a/git-submodule.sh b/git-submodule.sh
index 1c39b593a6..65178ae8e3 100755
--- a/git-submodule.sh
+++ b/git-submodule.sh
@@ -194,7 +194,7 @@ cmd_add()
 	else
 
 		module_clone "$path" "$realrepo" || exit
-		(unset GIT_DIR; cd "$path" && git checkout -q ${branch:+-b "$branch" "origin/$branch"}) ||
+		(unset GIT_DIR; cd "$path" && git checkout -f -q ${branch:+-b "$branch" "origin/$branch"}) ||
 		die "Unable to checkout submodule '$path'"
 	fi
 
@@ -340,8 +340,13 @@ cmd_update()
 
 		if test "$subsha1" != "$sha1"
 		then
+			force=
+			if test -z "$subsha1"
+			then
+				force="-f"
+			fi
 			(unset GIT_DIR; cd "$path" && git-fetch &&
-				git-checkout -q "$sha1") ||
+				git-checkout $force -q "$sha1") ||
 			die "Unable to checkout '$sha1' in submodule path '$path'"
 
 			say "Submodule path '$path': checked out '$sha1'"
@@ -634,6 +639,14 @@ cmd_sync()
 	do
 		name=$(module_name "$path")
 		url=$(git config -f .gitmodules --get submodule."$name".url)
+
+		# Possibly a url relative to parent
+		case "$url" in
+		./*|../*)
+			url=$(resolve_relative_url "$url") || exit
+			;;
+		esac
+
 		if test -e "$path"/.git
 		then
 		(
diff --git a/git-svn.perl b/git-svn.perl
index 80a5728371..ef6d773df1 100755
--- a/git-svn.perl
+++ b/git-svn.perl
@@ -66,7 +66,7 @@ my ($_stdin, $_help, $_edit,
 	$_version, $_fetch_all, $_no_rebase,
 	$_merge, $_strategy, $_dry_run, $_local,
 	$_prefix, $_no_checkout, $_url, $_verbose,
-	$_git_format, $_commit_url);
+	$_git_format, $_commit_url, $_tag);
 $Git::SVN::_follow_parent = 1;
 my %remote_opts = ( 'username=s' => \$Git::SVN::Prompt::_username,
                     'config-dir=s' => \$Git::SVN::Ra::config_dir,
@@ -131,6 +131,15 @@ my %cmd = (
 			  'revision|r=i' => \$_revision,
 			  'no-rebase' => \$_no_rebase,
 			%cmt_opts, %fc_opts } ],
+	branch => [ \&cmd_branch,
+	            'Create a branch in the SVN repository',
+	            { 'message|m=s' => \$_message,
+	              'dry-run|n' => \$_dry_run,
+		      'tag|t' => \$_tag } ],
+	tag => [ sub { $_tag = 1; cmd_branch(@_) },
+	         'Create a tag in the SVN repository',
+	         { 'message|m=s' => \$_message,
+	           'dry-run|n' => \$_dry_run } ],
 	'set-tree' => [ \&cmd_set_tree,
 	                "Set an SVN repository to a git tree-ish",
 			{ 'stdin|' => \$_stdin, %cmt_opts, %fc_opts, } ],
@@ -537,6 +546,42 @@ sub cmd_dcommit {
 	unlink $gs->{index};
 }
 
+sub cmd_branch {
+	my ($branch_name, $head) = @_;
+
+	unless (defined $branch_name && length $branch_name) {
+		die(($_tag ? "tag" : "branch") . " name required\n");
+	}
+	$head ||= 'HEAD';
+
+	my ($src, $rev, undef, $gs) = working_head_info($head);
+
+	my $remote = Git::SVN::read_all_remotes()->{svn};
+	my $glob = $remote->{ $_tag ? 'tags' : 'branches' };
+	my ($lft, $rgt) = @{ $glob->{path} }{qw/left right/};
+	my $dst = join '/', $remote->{url}, $lft, $branch_name, ($rgt || ());
+
+	my $ctx = SVN::Client->new(
+		auth    => Git::SVN::Ra::_auth_providers(),
+		log_msg => sub {
+			${ $_[0] } = defined $_message
+				? $_message
+				: 'Create ' . ($_tag ? 'tag ' : 'branch ' )
+				. $branch_name;
+		},
+	);
+
+	eval {
+		$ctx->ls($dst, 'HEAD', 0);
+	} and die "branch ${branch_name} already exists\n";
+
+	print "Copying ${src} at r${rev} to ${dst}...\n";
+	$ctx->copy($src, $rev, $dst)
+		unless $_dry_run;
+
+	$gs->fetch_all;
+}
+
 sub cmd_find_rev {
 	my $revision_or_hash = shift or die "SVN or git revision required ",
 	                                    "as a command-line argument\n";
@@ -2591,7 +2636,7 @@ sub set_tree {
 	my ($self, $tree) = (shift, shift);
 	my $log_entry = ::get_commit_entry($tree);
 	unless ($self->{last_rev}) {
-		fatal("Must have an existing revision to commit");
+		::fatal("Must have an existing revision to commit");
 	}
 	my %ed_opts = ( r => $self->{last_rev},
 	                log => $log_entry->{log},
diff --git a/git-web--browse.sh b/git-web--browse.sh
index 384148a59f..78d236b77f 100755
--- a/git-web--browse.sh
+++ b/git-web--browse.sh
@@ -31,7 +31,7 @@ valid_custom_tool()
 
 valid_tool() {
 	case "$1" in
-		firefox | iceweasel | konqueror | w3m | links | lynx | dillo | open)
+		firefox | iceweasel | konqueror | w3m | links | lynx | dillo | open | start)
 			;; # happy
 		*)
 			valid_custom_tool "$1" || return 1
@@ -114,6 +114,10 @@ if test -z "$browser" ; then
     if test -n "$SECURITYSESSIONID"; then
 	browser_candidates="open $browser_candidates"
     fi
+    # /bin/start indicates MinGW
+    if test -n /bin/start; then
+	browser_candidates="start $browser_candidates"
+    fi
 
     for i in $browser_candidates; do
 	init_browser_path $i
@@ -157,7 +161,7 @@ case "$browser" in
 		;;
 	esac
 	;;
-    w3m|links|lynx|open)
+    w3m|links|lynx|open|start)
 	eval "$browser_path" "$@"
 	;;
     dillo)
diff --git a/git.c b/git.c
index 905acc2f2c..f4b0cf611b 100644
--- a/git.c
+++ b/git.c
@@ -162,6 +162,8 @@ static int handle_alias(int *argcp, const char ***argv)
 			    alias_string + 1, alias_command);
 		}
 		count = split_cmdline(alias_string, &new_argv);
+		if (count < 0)
+			die("Bad alias.%s string", alias_command);
 		option_count = handle_options(&new_argv, &count, &envchanged);
 		if (envchanged)
 			die("alias '%s' changes environment variables\n"
@@ -328,6 +330,7 @@ static void handle_internal_command(int argc, const char **argv)
 		{ "prune-packed", cmd_prune_packed, RUN_SETUP },
 		{ "push", cmd_push, RUN_SETUP },
 		{ "read-tree", cmd_read_tree, RUN_SETUP },
+		{ "receive-pack", cmd_receive_pack },
 		{ "reflog", cmd_reflog, RUN_SETUP },
 		{ "remote", cmd_remote, RUN_SETUP },
 		{ "repo-config", cmd_config },
diff --git a/gitweb/gitweb.css b/gitweb/gitweb.css
index 07f5b53788..a01eac814e 100644
--- a/gitweb/gitweb.css
+++ b/gitweb/gitweb.css
@@ -435,6 +435,10 @@ div.search {
 	right: 12px
 }
 
+p.projsearch {
+	text-align: center;
+}
+
 td.linenr {
 	text-align: right;
 }
diff --git a/gitweb/gitweb.perl b/gitweb/gitweb.perl
index da474d082c..11168006cf 100755
--- a/gitweb/gitweb.perl
+++ b/gitweb/gitweb.perl
@@ -27,6 +27,13 @@ our $version = "++GIT_VERSION++";
 our $my_url = $cgi->url();
 our $my_uri = $cgi->url(-absolute => 1);
 
+# if we're called with PATH_INFO, we have to strip that
+# from the URL to find our real URL
+if (my $path_info = $ENV{"PATH_INFO"}) {
+	$my_url =~ s,\Q$path_info\E$,,;
+	$my_uri =~ s,\Q$path_info\E$,,;
+}
+
 # core git executable to use
 # this can just be "git" if your webserver has a sensible PATH
 our $GIT = "++GIT_BINDIR++/git";
@@ -275,6 +282,44 @@ our %feature = (
 	'forks' => {
 		'override' => 0,
 		'default' => [0]},
+
+	# Insert custom links to the action bar of all project pages.
+	# This enables you mainly to link to third-party scripts integrating
+	# into gitweb; e.g. git-browser for graphical history representation
+	# or custom web-based repository administration interface.
+
+	# The 'default' value consists of a list of triplets in the form
+	# (label, link, position) where position is the label after which
+	# to inster the link and link is a format string where %n expands
+	# to the project name, %f to the project path within the filesystem,
+	# %h to the current hash (h gitweb parameter) and %b to the current
+	# hash base (hb gitweb parameter).
+
+	# To enable system wide have in $GITWEB_CONFIG e.g.
+	# $feature{'actions'}{'default'} = [('graphiclog',
+	# 	'/git-browser/by-commit.html?r=%n', 'summary')];
+	# Project specific override is not supported.
+	'actions' => {
+		'override' => 0,
+		'default' => []},
+
+	# Allow gitweb scan project content tags described in ctags/
+	# of project repository, and display the popular Web 2.0-ish
+	# "tag cloud" near the project list. Note that this is something
+	# COMPLETELY different from the normal Git tags.
+
+	# gitweb by itself can show existing tags, but it does not handle
+	# tagging itself; you need an external application for that.
+	# For an example script, check Girocco's cgi/tagproj.cgi.
+	# You may want to install the HTML::TagCloud Perl module to get
+	# a pretty tag cloud instead of just a list of tags.
+
+	# To enable system wide have in $GITWEB_CONFIG
+	# $feature{'ctags'}{'default'} = ['path_to_tag_script'];
+	# Project specific override is not supported.
+	'ctags' => {
+		'override' => 0,
+		'default' => [0]},
 );
 
 sub gitweb_check_feature {
@@ -775,7 +820,7 @@ sub quot_cec {
 	);
 	my $chr = ( (exists $es{$cntrl})
 		    ? $es{$cntrl}
-		    : sprintf('\%03o', ord($cntrl)) );
+		    : sprintf('\%2x', ord($cntrl)) );
 	if ($opts{-nohtml}) {
 		return $chr;
 	} else {
@@ -1755,6 +1800,67 @@ sub git_get_project_description {
 	return $descr;
 }
 
+sub git_get_project_ctags {
+	my $path = shift;
+	my $ctags = {};
+
+	$git_dir = "$projectroot/$path";
+	foreach (<$git_dir/ctags/*>) {
+		open CT, $_ or next;
+		my $val = <CT>;
+		chomp $val;
+		close CT;
+		my $ctag = $_; $ctag =~ s#.*/##;
+		$ctags->{$ctag} = $val;
+	}
+	$ctags;
+}
+
+sub git_populate_project_tagcloud {
+	my $ctags = shift;
+
+	# First, merge different-cased tags; tags vote on casing
+	my %ctags_lc;
+	foreach (keys %$ctags) {
+		$ctags_lc{lc $_}->{count} += $ctags->{$_};
+		if (not $ctags_lc{lc $_}->{topcount}
+		    or $ctags_lc{lc $_}->{topcount} < $ctags->{$_}) {
+			$ctags_lc{lc $_}->{topcount} = $ctags->{$_};
+			$ctags_lc{lc $_}->{topname} = $_;
+		}
+	}
+
+	my $cloud;
+	if (eval { require HTML::TagCloud; 1; }) {
+		$cloud = HTML::TagCloud->new;
+		foreach (sort keys %ctags_lc) {
+			# Pad the title with spaces so that the cloud looks
+			# less crammed.
+			my $title = $ctags_lc{$_}->{topname};
+			$title =~ s/ /&nbsp;/g;
+			$title =~ s/^/&nbsp;/g;
+			$title =~ s/$/&nbsp;/g;
+			$cloud->add($title, $home_link."?by_tag=".$_, $ctags_lc{$_}->{count});
+		}
+	} else {
+		$cloud = \%ctags_lc;
+	}
+	$cloud;
+}
+
+sub git_show_project_tagcloud {
+	my ($cloud, $count) = @_;
+	print STDERR ref($cloud)."..\n";
+	if (ref $cloud eq 'HTML::TagCloud') {
+		return $cloud->html_and_css($count);
+	} else {
+		my @tags = sort { $cloud->{$a}->{count} <=> $cloud->{$b}->{count} } keys %$cloud;
+		return '<p align="center">' . join (', ', map {
+			"<a href=\"$home_link?by_tag=$_\">$cloud->{$_}->{topname}</a>"
+		} splice(@tags, 0, $count)) . '</p>';
+	}
+}
+
 sub git_get_project_url_list {
 	my $path = shift;
 
@@ -1803,9 +1909,7 @@ sub git_get_projects_list {
 
 				my $subdir = substr($File::Find::name, $pfxlen + 1);
 				# we check related file in $projectroot
-				if ($check_forks and $subdir =~ m#/.#) {
-					$File::Find::prune = 1;
-				} elsif (check_export_ok("$projectroot/$filter/$subdir")) {
+				if (check_export_ok("$projectroot/$filter/$subdir")) {
 					push @list, { path => ($filter ? "$filter/" : '') . $subdir };
 					$File::Find::prune = 1;
 				}
@@ -2757,13 +2861,26 @@ sub git_print_page_nav {
 			}
 		}
 	}
+
 	$arg{'tree'}{'hash'} = $treehead if defined $treehead;
 	$arg{'tree'}{'hash_base'} = $treebase if defined $treebase;
 
+	my @actions = gitweb_check_feature('actions');
+	while (@actions) {
+		my ($label, $link, $pos) = (shift(@actions), shift(@actions), shift(@actions));
+		@navs = map { $_ eq $pos ? ($_, $label) : $_ } @navs;
+		# munch munch
+		$link =~ s#%n#$project#g;
+		$link =~ s#%f#$git_dir#g;
+		$treehead ? $link =~ s#%h#$treehead#g : $link =~ s#%h##g;
+		$treebase ? $link =~ s#%b#$treebase#g : $link =~ s#%b##g;
+		$arg{$label}{'_href'} = $link;
+	}
+
 	print "<div class=\"page_nav\">\n" .
 		(join " | ",
 		 map { $_ eq $current ?
-		       $_ : $cgi->a({-href => href(%{$arg{$_}})}, "$_")
+		       $_ : $cgi->a({-href => ($arg{$_}{_href} ? $arg{$_}{_href} : href(%{$arg{$_}}))}, "$_")
 		 } @navs);
 	print "<br/>\n$extra<br/>\n" .
 	      "</div>\n";
@@ -3573,6 +3690,7 @@ sub fill_project_list_info {
 	my ($projlist, $check_forks) = @_;
 	my @projects;
 
+	my $show_ctags = gitweb_check_feature('ctags');
  PROJECT:
 	foreach my $pr (@$projlist) {
 		my (@activity) = git_get_last_activity($pr->{'path'});
@@ -3599,25 +3717,20 @@ sub fill_project_list_info {
 				$pr->{'forks'} = 0;
 			}
 		}
+		$show_ctags and $pr->{'ctags'} = git_get_project_ctags($pr->{'path'});
 		push @projects, $pr;
 	}
 
 	return @projects;
 }
 
-# print 'sort by' <th> element, either sorting by $key if $name eq $order
-# (changing $list), or generating 'sort by $name' replay link otherwise
+# print 'sort by' <th> element, generating 'sort by $name' replay link
+# if that order is not selected
 sub print_sort_th {
-	my ($str_sort, $name, $order, $key, $header, $list) = @_;
-	$key    ||= $name;
+	my ($name, $order, $header) = @_;
 	$header ||= ucfirst($name);
 
 	if ($order eq $name) {
-		if ($str_sort) {
-			@$list = sort {$a->{$key} cmp $b->{$key}} @$list;
-		} else {
-			@$list = sort {$a->{$key} <=> $b->{$key}} @$list;
-		}
 		print "<th>$header</th>\n";
 	} else {
 		print "<th>" .
@@ -3627,15 +3740,8 @@ sub print_sort_th {
 	}
 }
 
-sub print_sort_th_str {
-	print_sort_th(1, @_);
-}
-
-sub print_sort_th_num {
-	print_sort_th(0, @_);
-}
-
 sub git_project_list_body {
+	# actually uses global variable $project
 	my ($projlist, $order, $from, $to, $extra, $no_header) = @_;
 
 	my ($check_forks) = gitweb_check_feature('forks');
@@ -3645,26 +3751,60 @@ sub git_project_list_body {
 	$from = 0 unless defined $from;
 	$to = $#projects if (!defined $to || $#projects < $to);
 
+	my %order_info = (
+		project => { key => 'path', type => 'str' },
+		descr => { key => 'descr_long', type => 'str' },
+		owner => { key => 'owner', type => 'str' },
+		age => { key => 'age', type => 'num' }
+	);
+	my $oi = $order_info{$order};
+	if ($oi->{'type'} eq 'str') {
+		@projects = sort {$a->{$oi->{'key'}} cmp $b->{$oi->{'key'}}} @projects;
+	} else {
+		@projects = sort {$a->{$oi->{'key'}} <=> $b->{$oi->{'key'}}} @projects;
+	}
+
+	my $show_ctags = gitweb_check_feature('ctags');
+	if ($show_ctags) {
+		my %ctags;
+		foreach my $p (@projects) {
+			foreach my $ct (keys %{$p->{'ctags'}}) {
+				$ctags{$ct} += $p->{'ctags'}->{$ct};
+			}
+		}
+		my $cloud = git_populate_project_tagcloud(\%ctags);
+		print git_show_project_tagcloud($cloud, 64);
+	}
+
 	print "<table class=\"project_list\">\n";
 	unless ($no_header) {
 		print "<tr>\n";
 		if ($check_forks) {
 			print "<th></th>\n";
 		}
-		print_sort_th_str('project', $order, 'path',
-		                  'Project', \@projects);
-		print_sort_th_str('descr', $order, 'descr_long',
-		                  'Description', \@projects);
-		print_sort_th_str('owner', $order, 'owner',
-		                  'Owner', \@projects);
-		print_sort_th_num('age', $order, 'age',
-		                  'Last Change', \@projects);
+		print_sort_th('project', $order, 'Project');
+		print_sort_th('descr', $order, 'Description');
+		print_sort_th('owner', $order, 'Owner');
+		print_sort_th('age', $order, 'Last Change');
 		print "<th></th>\n" . # for links
 		      "</tr>\n";
 	}
 	my $alternate = 1;
+	my $tagfilter = $cgi->param('by_tag');
 	for (my $i = $from; $i <= $to; $i++) {
 		my $pr = $projects[$i];
+
+		next if $tagfilter and $show_ctags and not grep { lc $_ eq lc $tagfilter } keys %{$pr->{'ctags'}};
+		next if $searchtext and not $pr->{'path'} =~ /$searchtext/
+			and not $pr->{'descr_long'} =~ /$searchtext/;
+		# Weed out forks or non-matching entries of search
+		if ($check_forks) {
+			my $forkbase = $project; $forkbase ||= ''; $forkbase =~ s#\.git$#/#;
+			$forkbase="^$forkbase" if $forkbase;
+			next if not $searchtext and not $tagfilter and $show_ctags
+				and $pr->{'path'} =~ m#$forkbase.*/.*#; # regexp-safe
+		}
+
 		if ($alternate) {
 			print "<tr class=\"dark\">\n";
 		} else {
@@ -3999,6 +4139,11 @@ sub git_project_list {
 		close $fd;
 		print "</div>\n";
 	}
+	print $cgi->startform(-method => "get") .
+	      "<p class=\"projsearch\">Search:\n" .
+	      $cgi->textfield(-name => "s", -value => $searchtext) . "\n" .
+	      "</p>" .
+	      $cgi->end_form() . "\n";
 	git_project_list_body(\@list, $order);
 	git_footer_html();
 }
@@ -4070,10 +4215,10 @@ sub git_summary {
 
 	print "<div class=\"title\">&nbsp;</div>\n";
 	print "<table class=\"projects_list\">\n" .
-	      "<tr><td>description</td><td>" . esc_html($descr) . "</td></tr>\n" .
-	      "<tr><td>owner</td><td>" . esc_html($owner) . "</td></tr>\n";
+	      "<tr id=\"metadata_desc\"><td>description</td><td>" . esc_html($descr) . "</td></tr>\n" .
+	      "<tr id=\"metadata_owner\"><td>owner</td><td>" . esc_html($owner) . "</td></tr>\n";
 	if (defined $cd{'rfc2822'}) {
-		print "<tr><td>last change</td><td>$cd{'rfc2822'}</td></tr>\n";
+		print "<tr id=\"metadata_lchange\"><td>last change</td><td>$cd{'rfc2822'}</td></tr>\n";
 	}
 
 	# use per project git URL list in $projectroot/$project/cloneurl
@@ -4083,9 +4228,23 @@ sub git_summary {
 	@url_list = map { "$_/$project" } @git_base_url_list unless @url_list;
 	foreach my $git_url (@url_list) {
 		next unless $git_url;
-		print "<tr><td>$url_tag</td><td>$git_url</td></tr>\n";
+		print "<tr class=\"metadata_url\"><td>$url_tag</td><td>$git_url</td></tr>\n";
 		$url_tag = "";
 	}
+
+	# Tag cloud
+	my $show_ctags = (gitweb_check_feature('ctags'))[0];
+	if ($show_ctags) {
+		my $ctags = git_get_project_ctags($project);
+		my $cloud = git_populate_project_tagcloud($ctags);
+		print "<tr id=\"metadata_ctags\"><td>Content tags:<br />";
+		print "</td>\n<td>" unless %$ctags;
+		print "<form action=\"$show_ctags\" method=\"post\"><input type=\"hidden\" name=\"p\" value=\"$project\" />Add: <input type=\"text\" name=\"t\" size=\"8\" /></form>";
+		print "</td>\n<td>" if %$ctags;
+		print git_show_project_tagcloud($cloud, 48);
+		print "</td></tr>";
+	}
+
 	print "</table>\n";
 
 	if (-s "$projectroot/$project/README.html") {
@@ -4124,10 +4283,10 @@ sub git_summary {
 
 	if (@forklist) {
 		git_print_header_div('forks');
-		git_project_list_body(\@forklist, undef, 0, 15,
+		git_project_list_body(\@forklist, 'age', 0, 15,
 		                      $#forklist <= 15 ? undef :
 		                      $cgi->a({-href => href(action=>"forks")}, "..."),
-		                      'noheader');
+		                      'no_header');
 	}
 
 	git_footer_html();
@@ -4445,6 +4604,7 @@ sub git_tree {
 			$hash = $hash_base;
 		}
 	}
+	die_error(404, "No such tree") unless defined($hash);
 	$/ = "\0";
 	open my $fd, "-|", git_cmd(), "ls-tree", '-z', $hash
 		or die_error(500, "Open git-ls-tree failed");
@@ -4485,8 +4645,8 @@ sub git_tree {
 		if ($basedir ne '' && substr($basedir, -1) ne '/') {
 			$basedir .= '/';
 		}
+		git_print_page_path($file_name, 'tree', $hash_base);
 	}
-	git_print_page_path($file_name, 'tree', $hash_base);
 	print "<div class=\"page_body\">\n";
 	print "<table class=\"tree\">\n";
 	my $alternate = 1;
@@ -5498,7 +5658,11 @@ sub git_shortlog {
 	}
 	my $refs = git_get_references();
 
-	my @commitlist = parse_commits($hash, 101, (100 * $page));
+	my $commit_hash = $hash;
+	if (defined $hash_parent) {
+		$commit_hash = "$hash_parent..$hash";
+	}
+	my @commitlist = parse_commits($commit_hash, 101, (100 * $page));
 
 	my $paging_nav = format_paging_nav('shortlog', $hash, $head, $page, $#commitlist >= 100);
 	my $next_link = '';
diff --git a/graph.c b/graph.c
index e2633f8376..5f821706c6 100644
--- a/graph.c
+++ b/graph.c
@@ -4,6 +4,43 @@
 #include "diff.h"
 #include "revision.h"
 
+/* Internal API */
+
+/*
+ * Output the next line for a graph.
+ * This formats the next graph line into the specified strbuf.  It is not
+ * terminated with a newline.
+ *
+ * Returns 1 if the line includes the current commit, and 0 otherwise.
+ * graph_next_line() will return 1 exactly once for each time
+ * graph_update() is called.
+ */
+static int graph_next_line(struct git_graph *graph, struct strbuf *sb);
+
+/*
+ * Output a padding line in the graph.
+ * This is similar to graph_next_line().  However, it is guaranteed to
+ * never print the current commit line.  Instead, if the commit line is
+ * next, it will simply output a line of vertical padding, extending the
+ * branch lines downwards, but leaving them otherwise unchanged.
+ */
+static void graph_padding_line(struct git_graph *graph, struct strbuf *sb);
+
+/*
+ * Print a strbuf to stdout.  If the graph is non-NULL, all lines but the
+ * first will be prefixed with the graph output.
+ *
+ * If the strbuf ends with a newline, the output will end after this
+ * newline.  A new graph line will not be printed after the final newline.
+ * If the strbuf is empty, no output will be printed.
+ *
+ * Since the first line will not include the graph ouput, the caller is
+ * responsible for printing this line's graph (perhaps via
+ * graph_show_commit() or graph_show_oneline()) before calling
+ * graph_show_strbuf().
+ */
+static void graph_show_strbuf(struct git_graph *graph, struct strbuf const *sb);
+
 /*
  * TODO:
  * - Add colors to the graph.
@@ -180,14 +217,6 @@ struct git_graph *graph_init(struct rev_info *opt)
 	return graph;
 }
 
-void graph_release(struct git_graph *graph)
-{
-	free(graph->columns);
-	free(graph->new_columns);
-	free(graph->mapping);
-	free(graph);
-}
-
 static void graph_update_state(struct git_graph *graph, enum graph_state s)
 {
 	graph->prev_state = graph->state;
@@ -685,7 +714,7 @@ static void graph_output_commit_char(struct git_graph *graph, struct strbuf *sb)
 	strbuf_addch(sb, '*');
 }
 
-void graph_output_commit_line(struct git_graph *graph, struct strbuf *sb)
+static void graph_output_commit_line(struct git_graph *graph, struct strbuf *sb)
 {
 	int seen_this = 0;
 	int i, j;
@@ -760,7 +789,7 @@ void graph_output_commit_line(struct git_graph *graph, struct strbuf *sb)
 		graph_update_state(graph, GRAPH_COLLAPSING);
 }
 
-void graph_output_post_merge_line(struct git_graph *graph, struct strbuf *sb)
+static void graph_output_post_merge_line(struct git_graph *graph, struct strbuf *sb)
 {
 	int seen_this = 0;
 	int i, j;
@@ -801,7 +830,7 @@ void graph_output_post_merge_line(struct git_graph *graph, struct strbuf *sb)
 		graph_update_state(graph, GRAPH_COLLAPSING);
 }
 
-void graph_output_collapsing_line(struct git_graph *graph, struct strbuf *sb)
+static void graph_output_collapsing_line(struct git_graph *graph, struct strbuf *sb)
 {
 	int i;
 	int *tmp_mapping;
@@ -906,7 +935,7 @@ void graph_output_collapsing_line(struct git_graph *graph, struct strbuf *sb)
 		graph_update_state(graph, GRAPH_PADDING);
 }
 
-int graph_next_line(struct git_graph *graph, struct strbuf *sb)
+static int graph_next_line(struct git_graph *graph, struct strbuf *sb)
 {
 	switch (graph->state) {
 	case GRAPH_PADDING:
@@ -933,7 +962,7 @@ int graph_next_line(struct git_graph *graph, struct strbuf *sb)
 	return 0;
 }
 
-void graph_padding_line(struct git_graph *graph, struct strbuf *sb)
+static void graph_padding_line(struct git_graph *graph, struct strbuf *sb)
 {
 	int i, j;
 
@@ -1055,7 +1084,7 @@ int graph_show_remainder(struct git_graph *graph)
 }
 
 
-void graph_show_strbuf(struct git_graph *graph, struct strbuf const *sb)
+static void graph_show_strbuf(struct git_graph *graph, struct strbuf const *sb)
 {
 	char *p;
 
diff --git a/graph.h b/graph.h
index eab4e3daba..bc30d687c0 100644
--- a/graph.h
+++ b/graph.h
@@ -10,11 +10,6 @@ struct git_graph;
  */
 struct git_graph *graph_init(struct rev_info *opt);
 
-/*
- * Destroy a struct git_graph and free associated memory.
- */
-void graph_release(struct git_graph *graph);
-
 /*
  * Update a git_graph with a new commit.
  * This will cause the graph to begin outputting lines for the new commit
@@ -26,26 +21,6 @@ void graph_release(struct git_graph *graph);
  */
 void graph_update(struct git_graph *graph, struct commit *commit);
 
-/*
- * Output the next line for a graph.
- * This formats the next graph line into the specified strbuf.  It is not
- * terminated with a newline.
- *
- * Returns 1 if the line includes the current commit, and 0 otherwise.
- * graph_next_line() will return 1 exactly once for each time
- * graph_update() is called.
- */
-int graph_next_line(struct git_graph *graph, struct strbuf *sb);
-
-/*
- * Output a padding line in the graph.
- * This is similar to graph_next_line().  However, it is guaranteed to
- * never print the current commit line.  Instead, if the commit line is
- * next, it will simply output a line of vertical padding, extending the
- * branch lines downwards, but leaving them otherwise unchanged.
- */
-void graph_padding_line(struct git_graph *graph, struct strbuf *sb);
-
 /*
  * Determine if a graph has finished outputting lines for the current
  * commit.
@@ -89,21 +64,6 @@ void graph_show_padding(struct git_graph *graph);
  */
 int graph_show_remainder(struct git_graph *graph);
 
-/*
- * Print a strbuf to stdout.  If the graph is non-NULL, all lines but the
- * first will be prefixed with the graph output.
- *
- * If the strbuf ends with a newline, the output will end after this
- * newline.  A new graph line will not be printed after the final newline.
- * If the strbuf is empty, no output will be printed.
- *
- * Since the first line will not include the graph ouput, the caller is
- * responsible for printing this line's graph (perhaps via
- * graph_show_commit() or graph_show_oneline()) before calling
- * graph_show_strbuf().
- */
-void graph_show_strbuf(struct git_graph *graph, struct strbuf const *sb);
-
 /*
  * Print a commit message strbuf and the remainder of the graph to stdout.
  *
diff --git a/grep.c b/grep.c
index 706351197f..e2c190a7f6 100644
--- a/grep.c
+++ b/grep.c
@@ -239,6 +239,8 @@ static int word_char(char ch)
 static void show_line(struct grep_opt *opt, const char *bol, const char *eol,
 		      const char *name, unsigned lno, char sign)
 {
+	if (opt->null_following_name)
+		sign = '\0';
 	if (opt->pathname)
 		printf("%s%c", name, sign);
 	if (opt->linenum)
@@ -246,6 +248,11 @@ static void show_line(struct grep_opt *opt, const char *bol, const char *eol,
 	printf("%.*s\n", (int)(eol-bol), bol);
 }
 
+static void show_name(struct grep_opt *opt, const char *name)
+{
+	printf("%s%c", name, opt->null_following_name ? '\0' : '\n');
+}
+
 static int fixmatch(const char *pattern, char *line, regmatch_t *match)
 {
 	char *hit = strstr(line, pattern);
@@ -489,7 +496,7 @@ static int grep_buffer_1(struct grep_opt *opt, const char *name,
 				return 1;
 			}
 			if (opt->name_only) {
-				printf("%s\n", name);
+				show_name(opt, name);
 				return 1;
 			}
 			/* Hit at this line.  If we haven't shown the
@@ -555,7 +562,7 @@ static int grep_buffer_1(struct grep_opt *opt, const char *name,
 		return 0;
 	if (opt->unmatch_name_only) {
 		/* We did not see any hit, so we want to show this */
-		printf("%s\n", name);
+		show_name(opt, name);
 		return 1;
 	}
 
@@ -565,7 +572,8 @@ static int grep_buffer_1(struct grep_opt *opt, const char *name,
 	 * make it another option?  For now suppress them.
 	 */
 	if (opt->count && count)
-		printf("%s:%u\n", name, count);
+		printf("%s%c%u\n", name,
+		       opt->null_following_name ? '\0' : ':', count);
 	return !!last_hit;
 }
 
diff --git a/grep.h b/grep.h
index 59b3f871ea..45a222d904 100644
--- a/grep.h
+++ b/grep.h
@@ -74,6 +74,7 @@ struct grep_opt {
 	unsigned extended:1;
 	unsigned relative:1;
 	unsigned pathname:1;
+	unsigned null_following_name:1;
 	int regflags;
 	unsigned pre_context;
 	unsigned post_context;
diff --git a/help.c b/help.c
index 300cd38a9f..fd87bb5aee 100644
--- a/help.c
+++ b/help.c
@@ -204,8 +204,8 @@ void load_command_list(const char *prefix,
 		while (1) {
 			if ((colon = strchr(path, PATH_SEP)))
 				*colon = 0;
-
-			list_commands_in_dir(other_cmds, path, prefix);
+			if (!exec_path || strcmp(path, exec_path))
+				list_commands_in_dir(other_cmds, path, prefix);
 
 			if (!colon)
 				break;
@@ -262,11 +262,15 @@ int is_in_cmdlist(struct cmdnames *c, const char *s)
 }
 
 static int autocorrect;
+static struct cmdnames aliases;
 
 static int git_unknown_cmd_config(const char *var, const char *value, void *cb)
 {
 	if (!strcmp(var, "help.autocorrect"))
 		autocorrect = git_config_int(var,value);
+	/* Also use aliases for command lookup */
+	if (!prefixcmp(var, "alias."))
+		add_cmdname(&aliases, var + 6, strlen(var + 6));
 
 	return git_default_config(var, value, cb);
 }
@@ -280,6 +284,18 @@ static int levenshtein_compare(const void *p1, const void *p2)
 	return l1 != l2 ? l1 - l2 : strcmp(s1, s2);
 }
 
+static void add_cmd_list(struct cmdnames *cmds, struct cmdnames *old)
+{
+	int i;
+	ALLOC_GROW(cmds->names, cmds->cnt + old->cnt, cmds->alloc);
+
+	for (i = 0; i < old->cnt; i++)
+		cmds->names[cmds->cnt++] = old->names[i];
+	free(old->names);
+	old->cnt = 0;
+	old->names = NULL;
+}
+
 const char *help_unknown_cmd(const char *cmd)
 {
 	int i, n, best_similarity = 0;
@@ -287,17 +303,17 @@ const char *help_unknown_cmd(const char *cmd)
 
 	memset(&main_cmds, 0, sizeof(main_cmds));
 	memset(&other_cmds, 0, sizeof(main_cmds));
+	memset(&aliases, 0, sizeof(aliases));
 
 	git_config(git_unknown_cmd_config, NULL);
 
 	load_command_list("git-", &main_cmds, &other_cmds);
 
-	ALLOC_GROW(main_cmds.names, main_cmds.cnt + other_cmds.cnt,
-		   main_cmds.alloc);
-	memcpy(main_cmds.names + main_cmds.cnt, other_cmds.names,
-	       other_cmds.cnt * sizeof(other_cmds.names[0]));
-	main_cmds.cnt += other_cmds.cnt;
-	free(other_cmds.names);
+	add_cmd_list(&main_cmds, &aliases);
+	add_cmd_list(&main_cmds, &other_cmds);
+	qsort(main_cmds.names, main_cmds.cnt,
+	      sizeof(main_cmds.names), cmdname_compare);
+	uniq(&main_cmds);
 
 	/* This reuses cmdname->len for similarity index */
 	for (i = 0; i < main_cmds.cnt; ++i)
diff --git a/http-push.c b/http-push.c
index c9dd9a1f64..42f4d78e54 100644
--- a/http-push.c
+++ b/http-push.c
@@ -126,7 +126,7 @@ struct transfer_request
 	char errorstr[CURL_ERROR_SIZE];
 	long http_code;
 	unsigned char real_sha1[20];
-	SHA_CTX c;
+	git_SHA_CTX c;
 	z_stream stream;
 	int zret;
 	int rename;
@@ -209,7 +209,7 @@ static size_t fwrite_sha1_file(void *ptr, size_t eltsize, size_t nmemb,
 		request->stream.next_out = expn;
 		request->stream.avail_out = sizeof(expn);
 		request->zret = inflate(&request->stream, Z_SYNC_FLUSH);
-		SHA1_Update(&request->c, expn,
+		git_SHA1_Update(&request->c, expn,
 			    sizeof(expn) - request->stream.avail_out);
 	} while (request->stream.avail_in && request->zret == Z_OK);
 	data_received++;
@@ -270,7 +270,7 @@ static void start_fetch_loose(struct transfer_request *request)
 
 	inflateInit(&request->stream);
 
-	SHA1_Init(&request->c);
+	git_SHA1_Init(&request->c);
 
 	url = xmalloc(strlen(remote->url) + 50);
 	request->url = xmalloc(strlen(remote->url) + 50);
@@ -310,7 +310,7 @@ static void start_fetch_loose(struct transfer_request *request)
 	if (prev_read == -1) {
 		memset(&request->stream, 0, sizeof(request->stream));
 		inflateInit(&request->stream);
-		SHA1_Init(&request->c);
+		git_SHA1_Init(&request->c);
 		if (prev_posn>0) {
 			prev_posn = 0;
 			lseek(request->local_fileno, 0, SEEK_SET);
@@ -742,7 +742,7 @@ static void finish_request(struct transfer_request *request)
 				fprintf(stderr, "Warning: requested range invalid; we may already have all the data.\n");
 
 			inflateEnd(&request->stream);
-			SHA1_Final(request->real_sha1, &request->c);
+			git_SHA1_Final(request->real_sha1, &request->c);
 			if (request->zret != Z_STREAM_END) {
 				unlink(request->tmpfile);
 			} else if (hashcmp(request->obj->sha1, request->real_sha1)) {
diff --git a/http-walker.c b/http-walker.c
index 9dc6b27b45..7271c7d19d 100644
--- a/http-walker.c
+++ b/http-walker.c
@@ -36,7 +36,7 @@ struct object_request
 	char errorstr[CURL_ERROR_SIZE];
 	long http_code;
 	unsigned char real_sha1[20];
-	SHA_CTX c;
+	git_SHA_CTX c;
 	z_stream stream;
 	int zret;
 	int rename;
@@ -83,7 +83,7 @@ static size_t fwrite_sha1_file(void *ptr, size_t eltsize, size_t nmemb,
 		obj_req->stream.next_out = expn;
 		obj_req->stream.avail_out = sizeof(expn);
 		obj_req->zret = inflate(&obj_req->stream, Z_SYNC_FLUSH);
-		SHA1_Update(&obj_req->c, expn,
+		git_SHA1_Update(&obj_req->c, expn,
 			    sizeof(expn) - obj_req->stream.avail_out);
 	} while (obj_req->stream.avail_in && obj_req->zret == Z_OK);
 	data_received++;
@@ -144,7 +144,7 @@ static void start_object_request(struct walker *walker,
 
 	inflateInit(&obj_req->stream);
 
-	SHA1_Init(&obj_req->c);
+	git_SHA1_Init(&obj_req->c);
 
 	url = xmalloc(strlen(obj_req->repo->base) + 51);
 	obj_req->url = xmalloc(strlen(obj_req->repo->base) + 51);
@@ -184,7 +184,7 @@ static void start_object_request(struct walker *walker,
 	if (prev_read == -1) {
 		memset(&obj_req->stream, 0, sizeof(obj_req->stream));
 		inflateInit(&obj_req->stream);
-		SHA1_Init(&obj_req->c);
+		git_SHA1_Init(&obj_req->c);
 		if (prev_posn>0) {
 			prev_posn = 0;
 			lseek(obj_req->local, 0, SEEK_SET);
@@ -244,7 +244,7 @@ static void finish_object_request(struct object_request *obj_req)
 	}
 
 	inflateEnd(&obj_req->stream);
-	SHA1_Final(obj_req->real_sha1, &obj_req->c);
+	git_SHA1_Final(obj_req->real_sha1, &obj_req->c);
 	if (obj_req->zret != Z_STREAM_END) {
 		unlink(obj_req->tmpfile);
 		return;
diff --git a/index-pack.c b/index-pack.c
index a6e91fe3ba..73860bf3da 100644
--- a/index-pack.c
+++ b/index-pack.c
@@ -67,7 +67,7 @@ static struct progress *progress;
 static unsigned char input_buffer[4096];
 static unsigned int input_offset, input_len;
 static off_t consumed_bytes;
-static SHA_CTX input_ctx;
+static git_SHA_CTX input_ctx;
 static uint32_t input_crc32;
 static int input_fd, output_fd, pack_fd;
 
@@ -119,7 +119,7 @@ static void flush(void)
 	if (input_offset) {
 		if (output_fd >= 0)
 			write_or_die(output_fd, input_buffer, input_offset);
-		SHA1_Update(&input_ctx, input_buffer, input_offset);
+		git_SHA1_Update(&input_ctx, input_buffer, input_offset);
 		memmove(input_buffer, input_buffer + input_offset, input_len);
 		input_offset = 0;
 	}
@@ -172,7 +172,7 @@ static char *open_pack_file(char *pack_name)
 		if (!pack_name) {
 			static char tmpfile[PATH_MAX];
 			snprintf(tmpfile, sizeof(tmpfile),
-				 "%s/tmp_pack_XXXXXX", get_object_directory());
+				 "%s/pack/tmp_pack_XXXXXX", get_object_directory());
 			output_fd = xmkstemp(tmpfile);
 			pack_name = xstrdup(tmpfile);
 		} else
@@ -188,7 +188,7 @@ static char *open_pack_file(char *pack_name)
 		output_fd = -1;
 		pack_fd = input_fd;
 	}
-	SHA1_Init(&input_ctx);
+	git_SHA1_Init(&input_ctx);
 	return pack_name;
 }
 
@@ -365,8 +365,11 @@ static void *get_data_from_pack(struct object_entry *obj)
 	data = src;
 	do {
 		ssize_t n = pread(pack_fd, data + rdy, len - rdy, from + rdy);
-		if (n <= 0)
+		if (n < 0)
 			die("cannot pread pack file: %s", strerror(errno));
+		if (!n)
+			die("premature end of pack file, %lu bytes missing",
+			    len - rdy);
 		rdy += n;
 	} while (rdy < len);
 	data = xmalloc(obj->size);
@@ -588,7 +591,7 @@ static void parse_pack_objects(unsigned char *sha1)
 
 	/* Check pack integrity */
 	flush();
-	SHA1_Final(sha1, &input_ctx);
+	git_SHA1_Final(sha1, &input_ctx);
 	if (hashcmp(fill(20), sha1))
 		die("pack is corrupted (SHA1 mismatch)");
 	use(20);
diff --git a/ll-merge.c b/ll-merge.c
index 9837c842a3..4a716146f6 100644
--- a/ll-merge.c
+++ b/ll-merge.c
@@ -63,6 +63,7 @@ static int ll_xdl_merge(const struct ll_merge_driver *drv_unused,
 			int virtual_ancestor)
 {
 	xpparam_t xpp;
+	int style = 0;
 
 	if (buffer_is_binary(orig->ptr, orig->size) ||
 	    buffer_is_binary(src1->ptr, src1->size) ||
@@ -77,10 +78,12 @@ static int ll_xdl_merge(const struct ll_merge_driver *drv_unused,
 	}
 
 	memset(&xpp, 0, sizeof(xpp));
+	if (git_xmerge_style >= 0)
+		style = git_xmerge_style;
 	return xdl_merge(orig,
 			 src1, name1,
 			 src2, name2,
-			 &xpp, XDL_MERGE_ZEALOUS,
+			 &xpp, XDL_MERGE_ZEALOUS | style,
 			 result);
 }
 
@@ -95,10 +98,15 @@ static int ll_union_merge(const struct ll_merge_driver *drv_unused,
 	char *src, *dst;
 	long size;
 	const int marker_size = 7;
+	int status, saved_style;
 
-	int status = ll_xdl_merge(drv_unused, result, path_unused,
-				  orig, src1, NULL, src2, NULL,
-				  virtual_ancestor);
+	/* We have to force the RCS "merge" style */
+	saved_style = git_xmerge_style;
+	git_xmerge_style = 0;
+	status = ll_xdl_merge(drv_unused, result, path_unused,
+			      orig, src1, NULL, src2, NULL,
+			      virtual_ancestor);
+	git_xmerge_style = saved_style;
 	if (status <= 0)
 		return status;
 	size = result->size;
diff --git a/merge-recursive.c b/merge-recursive.c
new file mode 100644
index 0000000000..6bc3eac85c
--- /dev/null
+++ b/merge-recursive.c
@@ -0,0 +1,1357 @@
+/*
+ * Recursive Merge algorithm stolen from git-merge-recursive.py by
+ * Fredrik Kuivinen.
+ * The thieves were Alex Riesen and Johannes Schindelin, in June/July 2006
+ */
+#include "cache.h"
+#include "cache-tree.h"
+#include "commit.h"
+#include "blob.h"
+#include "builtin.h"
+#include "tree-walk.h"
+#include "diff.h"
+#include "diffcore.h"
+#include "tag.h"
+#include "unpack-trees.h"
+#include "string-list.h"
+#include "xdiff-interface.h"
+#include "ll-merge.h"
+#include "interpolate.h"
+#include "attr.h"
+#include "merge-recursive.h"
+#include "dir.h"
+
+static struct tree *shift_tree_object(struct tree *one, struct tree *two)
+{
+	unsigned char shifted[20];
+
+	/*
+	 * NEEDSWORK: this limits the recursion depth to hardcoded
+	 * value '2' to avoid excessive overhead.
+	 */
+	shift_tree(one->object.sha1, two->object.sha1, shifted, 2);
+	if (!hashcmp(two->object.sha1, shifted))
+		return two;
+	return lookup_tree(shifted);
+}
+
+/*
+ * A virtual commit has (const char *)commit->util set to the name.
+ */
+
+struct commit *make_virtual_commit(struct tree *tree, const char *comment)
+{
+	struct commit *commit = xcalloc(1, sizeof(struct commit));
+	commit->tree = tree;
+	commit->util = (void*)comment;
+	/* avoid warnings */
+	commit->object.parsed = 1;
+	return commit;
+}
+
+/*
+ * Since we use get_tree_entry(), which does not put the read object into
+ * the object pool, we cannot rely on a == b.
+ */
+static int sha_eq(const unsigned char *a, const unsigned char *b)
+{
+	if (!a && !b)
+		return 2;
+	return a && b && hashcmp(a, b) == 0;
+}
+
+/*
+ * Since we want to write the index eventually, we cannot reuse the index
+ * for these (temporary) data.
+ */
+struct stage_data
+{
+	struct
+	{
+		unsigned mode;
+		unsigned char sha[20];
+	} stages[4];
+	unsigned processed:1;
+};
+
+static int show(struct merge_options *o, int v)
+{
+	return (!o->call_depth && o->verbosity >= v) || o->verbosity >= 5;
+}
+
+static void flush_output(struct merge_options *o)
+{
+	if (o->obuf.len) {
+		fputs(o->obuf.buf, stdout);
+		strbuf_reset(&o->obuf);
+	}
+}
+
+static void output(struct merge_options *o, int v, const char *fmt, ...)
+{
+	int len;
+	va_list ap;
+
+	if (!show(o, v))
+		return;
+
+	strbuf_grow(&o->obuf, o->call_depth * 2 + 2);
+	memset(o->obuf.buf + o->obuf.len, ' ', o->call_depth * 2);
+	strbuf_setlen(&o->obuf, o->obuf.len + o->call_depth * 2);
+
+	va_start(ap, fmt);
+	len = vsnprintf(o->obuf.buf + o->obuf.len, strbuf_avail(&o->obuf), fmt, ap);
+	va_end(ap);
+
+	if (len < 0)
+		len = 0;
+	if (len >= strbuf_avail(&o->obuf)) {
+		strbuf_grow(&o->obuf, len + 2);
+		va_start(ap, fmt);
+		len = vsnprintf(o->obuf.buf + o->obuf.len, strbuf_avail(&o->obuf), fmt, ap);
+		va_end(ap);
+		if (len >= strbuf_avail(&o->obuf)) {
+			die("this should not happen, your snprintf is broken");
+		}
+	}
+	strbuf_setlen(&o->obuf, o->obuf.len + len);
+	strbuf_add(&o->obuf, "\n", 1);
+	if (!o->buffer_output)
+		flush_output(o);
+}
+
+static void output_commit_title(struct merge_options *o, struct commit *commit)
+{
+	int i;
+	flush_output(o);
+	for (i = o->call_depth; i--;)
+		fputs("  ", stdout);
+	if (commit->util)
+		printf("virtual %s\n", (char *)commit->util);
+	else {
+		printf("%s ", find_unique_abbrev(commit->object.sha1, DEFAULT_ABBREV));
+		if (parse_commit(commit) != 0)
+			printf("(bad commit)\n");
+		else {
+			const char *s;
+			int len;
+			for (s = commit->buffer; *s; s++)
+				if (*s == '\n' && s[1] == '\n') {
+					s += 2;
+					break;
+				}
+			for (len = 0; s[len] && '\n' != s[len]; len++)
+				; /* do nothing */
+			printf("%.*s\n", len, s);
+		}
+	}
+}
+
+static int add_cacheinfo(unsigned int mode, const unsigned char *sha1,
+		const char *path, int stage, int refresh, int options)
+{
+	struct cache_entry *ce;
+	ce = make_cache_entry(mode, sha1 ? sha1 : null_sha1, path, stage, refresh);
+	if (!ce)
+		return error("addinfo_cache failed for path '%s'", path);
+	return add_cache_entry(ce, options);
+}
+
+static void init_tree_desc_from_tree(struct tree_desc *desc, struct tree *tree)
+{
+	parse_tree(tree);
+	init_tree_desc(desc, tree->buffer, tree->size);
+}
+
+static int git_merge_trees(int index_only,
+			   struct tree *common,
+			   struct tree *head,
+			   struct tree *merge)
+{
+	int rc;
+	struct tree_desc t[3];
+	struct unpack_trees_options opts;
+
+	memset(&opts, 0, sizeof(opts));
+	if (index_only)
+		opts.index_only = 1;
+	else
+		opts.update = 1;
+	opts.merge = 1;
+	opts.head_idx = 2;
+	opts.fn = threeway_merge;
+	opts.src_index = &the_index;
+	opts.dst_index = &the_index;
+
+	init_tree_desc_from_tree(t+0, common);
+	init_tree_desc_from_tree(t+1, head);
+	init_tree_desc_from_tree(t+2, merge);
+
+	rc = unpack_trees(3, t, &opts);
+	cache_tree_free(&active_cache_tree);
+	return rc;
+}
+
+struct tree *write_tree_from_memory(struct merge_options *o)
+{
+	struct tree *result = NULL;
+
+	if (unmerged_cache()) {
+		int i;
+		output(o, 0, "There are unmerged index entries:");
+		for (i = 0; i < active_nr; i++) {
+			struct cache_entry *ce = active_cache[i];
+			if (ce_stage(ce))
+				output(o, 0, "%d %.*s", ce_stage(ce), ce_namelen(ce), ce->name);
+		}
+		return NULL;
+	}
+
+	if (!active_cache_tree)
+		active_cache_tree = cache_tree();
+
+	if (!cache_tree_fully_valid(active_cache_tree) &&
+	    cache_tree_update(active_cache_tree,
+			      active_cache, active_nr, 0, 0) < 0)
+		die("error building trees");
+
+	result = lookup_tree(active_cache_tree->sha1);
+
+	return result;
+}
+
+static int save_files_dirs(const unsigned char *sha1,
+		const char *base, int baselen, const char *path,
+		unsigned int mode, int stage, void *context)
+{
+	int len = strlen(path);
+	char *newpath = xmalloc(baselen + len + 1);
+	struct merge_options *o = context;
+
+	memcpy(newpath, base, baselen);
+	memcpy(newpath + baselen, path, len);
+	newpath[baselen + len] = '\0';
+
+	if (S_ISDIR(mode))
+		string_list_insert(newpath, &o->current_directory_set);
+	else
+		string_list_insert(newpath, &o->current_file_set);
+	free(newpath);
+
+	return READ_TREE_RECURSIVE;
+}
+
+static int get_files_dirs(struct merge_options *o, struct tree *tree)
+{
+	int n;
+	if (read_tree_recursive(tree, "", 0, 0, NULL, save_files_dirs, o))
+		return 0;
+	n = o->current_file_set.nr + o->current_directory_set.nr;
+	return n;
+}
+
+/*
+ * Returns an index_entry instance which doesn't have to correspond to
+ * a real cache entry in Git's index.
+ */
+static struct stage_data *insert_stage_data(const char *path,
+		struct tree *o, struct tree *a, struct tree *b,
+		struct string_list *entries)
+{
+	struct string_list_item *item;
+	struct stage_data *e = xcalloc(1, sizeof(struct stage_data));
+	get_tree_entry(o->object.sha1, path,
+			e->stages[1].sha, &e->stages[1].mode);
+	get_tree_entry(a->object.sha1, path,
+			e->stages[2].sha, &e->stages[2].mode);
+	get_tree_entry(b->object.sha1, path,
+			e->stages[3].sha, &e->stages[3].mode);
+	item = string_list_insert(path, entries);
+	item->util = e;
+	return e;
+}
+
+/*
+ * Create a dictionary mapping file names to stage_data objects. The
+ * dictionary contains one entry for every path with a non-zero stage entry.
+ */
+static struct string_list *get_unmerged(void)
+{
+	struct string_list *unmerged = xcalloc(1, sizeof(struct string_list));
+	int i;
+
+	unmerged->strdup_strings = 1;
+
+	for (i = 0; i < active_nr; i++) {
+		struct string_list_item *item;
+		struct stage_data *e;
+		struct cache_entry *ce = active_cache[i];
+		if (!ce_stage(ce))
+			continue;
+
+		item = string_list_lookup(ce->name, unmerged);
+		if (!item) {
+			item = string_list_insert(ce->name, unmerged);
+			item->util = xcalloc(1, sizeof(struct stage_data));
+		}
+		e = item->util;
+		e->stages[ce_stage(ce)].mode = ce->ce_mode;
+		hashcpy(e->stages[ce_stage(ce)].sha, ce->sha1);
+	}
+
+	return unmerged;
+}
+
+struct rename
+{
+	struct diff_filepair *pair;
+	struct stage_data *src_entry;
+	struct stage_data *dst_entry;
+	unsigned processed:1;
+};
+
+/*
+ * Get information of all renames which occurred between 'o_tree' and
+ * 'tree'. We need the three trees in the merge ('o_tree', 'a_tree' and
+ * 'b_tree') to be able to associate the correct cache entries with
+ * the rename information. 'tree' is always equal to either a_tree or b_tree.
+ */
+static struct string_list *get_renames(struct merge_options *o,
+				       struct tree *tree,
+				       struct tree *o_tree,
+				       struct tree *a_tree,
+				       struct tree *b_tree,
+				       struct string_list *entries)
+{
+	int i;
+	struct string_list *renames;
+	struct diff_options opts;
+
+	renames = xcalloc(1, sizeof(struct string_list));
+	diff_setup(&opts);
+	DIFF_OPT_SET(&opts, RECURSIVE);
+	opts.detect_rename = DIFF_DETECT_RENAME;
+	opts.rename_limit = o->merge_rename_limit >= 0 ? o->merge_rename_limit :
+			    o->diff_rename_limit >= 0 ? o->diff_rename_limit :
+			    500;
+	opts.warn_on_too_large_rename = 1;
+	opts.output_format = DIFF_FORMAT_NO_OUTPUT;
+	if (diff_setup_done(&opts) < 0)
+		die("diff setup failed");
+	diff_tree_sha1(o_tree->object.sha1, tree->object.sha1, "", &opts);
+	diffcore_std(&opts);
+	for (i = 0; i < diff_queued_diff.nr; ++i) {
+		struct string_list_item *item;
+		struct rename *re;
+		struct diff_filepair *pair = diff_queued_diff.queue[i];
+		if (pair->status != 'R') {
+			diff_free_filepair(pair);
+			continue;
+		}
+		re = xmalloc(sizeof(*re));
+		re->processed = 0;
+		re->pair = pair;
+		item = string_list_lookup(re->pair->one->path, entries);
+		if (!item)
+			re->src_entry = insert_stage_data(re->pair->one->path,
+					o_tree, a_tree, b_tree, entries);
+		else
+			re->src_entry = item->util;
+
+		item = string_list_lookup(re->pair->two->path, entries);
+		if (!item)
+			re->dst_entry = insert_stage_data(re->pair->two->path,
+					o_tree, a_tree, b_tree, entries);
+		else
+			re->dst_entry = item->util;
+		item = string_list_insert(pair->one->path, renames);
+		item->util = re;
+	}
+	opts.output_format = DIFF_FORMAT_NO_OUTPUT;
+	diff_queued_diff.nr = 0;
+	diff_flush(&opts);
+	return renames;
+}
+
+static int update_stages(const char *path, struct diff_filespec *o,
+			 struct diff_filespec *a, struct diff_filespec *b,
+			 int clear)
+{
+	int options = ADD_CACHE_OK_TO_ADD | ADD_CACHE_OK_TO_REPLACE;
+	if (clear)
+		if (remove_file_from_cache(path))
+			return -1;
+	if (o)
+		if (add_cacheinfo(o->mode, o->sha1, path, 1, 0, options))
+			return -1;
+	if (a)
+		if (add_cacheinfo(a->mode, a->sha1, path, 2, 0, options))
+			return -1;
+	if (b)
+		if (add_cacheinfo(b->mode, b->sha1, path, 3, 0, options))
+			return -1;
+	return 0;
+}
+
+static int remove_file(struct merge_options *o, int clean,
+		       const char *path, int no_wd)
+{
+	int update_cache = o->call_depth || clean;
+	int update_working_directory = !o->call_depth && !no_wd;
+
+	if (update_cache) {
+		if (remove_file_from_cache(path))
+			return -1;
+	}
+	if (update_working_directory) {
+		if (remove_path(path) && errno != ENOENT)
+			return -1;
+	}
+	return 0;
+}
+
+static char *unique_path(struct merge_options *o, const char *path, const char *branch)
+{
+	char *newpath = xmalloc(strlen(path) + 1 + strlen(branch) + 8 + 1);
+	int suffix = 0;
+	struct stat st;
+	char *p = newpath + strlen(path);
+	strcpy(newpath, path);
+	*(p++) = '~';
+	strcpy(p, branch);
+	for (; *p; ++p)
+		if ('/' == *p)
+			*p = '_';
+	while (string_list_has_string(&o->current_file_set, newpath) ||
+	       string_list_has_string(&o->current_directory_set, newpath) ||
+	       lstat(newpath, &st) == 0)
+		sprintf(p, "_%d", suffix++);
+
+	string_list_insert(newpath, &o->current_file_set);
+	return newpath;
+}
+
+static void flush_buffer(int fd, const char *buf, unsigned long size)
+{
+	while (size > 0) {
+		long ret = write_in_full(fd, buf, size);
+		if (ret < 0) {
+			/* Ignore epipe */
+			if (errno == EPIPE)
+				break;
+			die("merge-recursive: %s", strerror(errno));
+		} else if (!ret) {
+			die("merge-recursive: disk full?");
+		}
+		size -= ret;
+		buf += ret;
+	}
+}
+
+static int make_room_for_path(const char *path)
+{
+	int status;
+	const char *msg = "failed to create path '%s'%s";
+
+	status = safe_create_leading_directories_const(path);
+	if (status) {
+		if (status == -3) {
+			/* something else exists */
+			error(msg, path, ": perhaps a D/F conflict?");
+			return -1;
+		}
+		die(msg, path, "");
+	}
+
+	/* Successful unlink is good.. */
+	if (!unlink(path))
+		return 0;
+	/* .. and so is no existing file */
+	if (errno == ENOENT)
+		return 0;
+	/* .. but not some other error (who really cares what?) */
+	return error(msg, path, ": perhaps a D/F conflict?");
+}
+
+static void update_file_flags(struct merge_options *o,
+			      const unsigned char *sha,
+			      unsigned mode,
+			      const char *path,
+			      int update_cache,
+			      int update_wd)
+{
+	if (o->call_depth)
+		update_wd = 0;
+
+	if (update_wd) {
+		enum object_type type;
+		void *buf;
+		unsigned long size;
+
+		if (S_ISGITLINK(mode))
+			die("cannot read object %s '%s': It is a submodule!",
+			    sha1_to_hex(sha), path);
+
+		buf = read_sha1_file(sha, &type, &size);
+		if (!buf)
+			die("cannot read object %s '%s'", sha1_to_hex(sha), path);
+		if (type != OBJ_BLOB)
+			die("blob expected for %s '%s'", sha1_to_hex(sha), path);
+		if (S_ISREG(mode)) {
+			struct strbuf strbuf;
+			strbuf_init(&strbuf, 0);
+			if (convert_to_working_tree(path, buf, size, &strbuf)) {
+				free(buf);
+				size = strbuf.len;
+				buf = strbuf_detach(&strbuf, NULL);
+			}
+		}
+
+		if (make_room_for_path(path) < 0) {
+			update_wd = 0;
+			free(buf);
+			goto update_index;
+		}
+		if (S_ISREG(mode) || (!has_symlinks && S_ISLNK(mode))) {
+			int fd;
+			if (mode & 0100)
+				mode = 0777;
+			else
+				mode = 0666;
+			fd = open(path, O_WRONLY | O_TRUNC | O_CREAT, mode);
+			if (fd < 0)
+				die("failed to open %s: %s", path, strerror(errno));
+			flush_buffer(fd, buf, size);
+			close(fd);
+		} else if (S_ISLNK(mode)) {
+			char *lnk = xmemdupz(buf, size);
+			safe_create_leading_directories_const(path);
+			unlink(path);
+			symlink(lnk, path);
+			free(lnk);
+		} else
+			die("do not know what to do with %06o %s '%s'",
+			    mode, sha1_to_hex(sha), path);
+		free(buf);
+	}
+ update_index:
+	if (update_cache)
+		add_cacheinfo(mode, sha, path, 0, update_wd, ADD_CACHE_OK_TO_ADD);
+}
+
+static void update_file(struct merge_options *o,
+			int clean,
+			const unsigned char *sha,
+			unsigned mode,
+			const char *path)
+{
+	update_file_flags(o, sha, mode, path, o->call_depth || clean, !o->call_depth);
+}
+
+/* Low level file merging, update and removal */
+
+struct merge_file_info
+{
+	unsigned char sha[20];
+	unsigned mode;
+	unsigned clean:1,
+		 merge:1;
+};
+
+static void fill_mm(const unsigned char *sha1, mmfile_t *mm)
+{
+	unsigned long size;
+	enum object_type type;
+
+	if (!hashcmp(sha1, null_sha1)) {
+		mm->ptr = xstrdup("");
+		mm->size = 0;
+		return;
+	}
+
+	mm->ptr = read_sha1_file(sha1, &type, &size);
+	if (!mm->ptr || type != OBJ_BLOB)
+		die("unable to read blob object %s", sha1_to_hex(sha1));
+	mm->size = size;
+}
+
+static int merge_3way(struct merge_options *o,
+		      mmbuffer_t *result_buf,
+		      struct diff_filespec *one,
+		      struct diff_filespec *a,
+		      struct diff_filespec *b,
+		      const char *branch1,
+		      const char *branch2)
+{
+	mmfile_t orig, src1, src2;
+	char *name1, *name2;
+	int merge_status;
+
+	name1 = xstrdup(mkpath("%s:%s", branch1, a->path));
+	name2 = xstrdup(mkpath("%s:%s", branch2, b->path));
+
+	fill_mm(one->sha1, &orig);
+	fill_mm(a->sha1, &src1);
+	fill_mm(b->sha1, &src2);
+
+	merge_status = ll_merge(result_buf, a->path, &orig,
+				&src1, name1, &src2, name2,
+				o->call_depth);
+
+	free(name1);
+	free(name2);
+	free(orig.ptr);
+	free(src1.ptr);
+	free(src2.ptr);
+	return merge_status;
+}
+
+static struct merge_file_info merge_file(struct merge_options *o,
+				         struct diff_filespec *one,
+					 struct diff_filespec *a,
+					 struct diff_filespec *b,
+					 const char *branch1,
+					 const char *branch2)
+{
+	struct merge_file_info result;
+	result.merge = 0;
+	result.clean = 1;
+
+	if ((S_IFMT & a->mode) != (S_IFMT & b->mode)) {
+		result.clean = 0;
+		if (S_ISREG(a->mode)) {
+			result.mode = a->mode;
+			hashcpy(result.sha, a->sha1);
+		} else {
+			result.mode = b->mode;
+			hashcpy(result.sha, b->sha1);
+		}
+	} else {
+		if (!sha_eq(a->sha1, one->sha1) && !sha_eq(b->sha1, one->sha1))
+			result.merge = 1;
+
+		/*
+		 * Merge modes
+		 */
+		if (a->mode == b->mode || a->mode == one->mode)
+			result.mode = b->mode;
+		else {
+			result.mode = a->mode;
+			if (b->mode != one->mode) {
+				result.clean = 0;
+				result.merge = 1;
+			}
+		}
+
+		if (sha_eq(a->sha1, b->sha1) || sha_eq(a->sha1, one->sha1))
+			hashcpy(result.sha, b->sha1);
+		else if (sha_eq(b->sha1, one->sha1))
+			hashcpy(result.sha, a->sha1);
+		else if (S_ISREG(a->mode)) {
+			mmbuffer_t result_buf;
+			int merge_status;
+
+			merge_status = merge_3way(o, &result_buf, one, a, b,
+						  branch1, branch2);
+
+			if ((merge_status < 0) || !result_buf.ptr)
+				die("Failed to execute internal merge");
+
+			if (write_sha1_file(result_buf.ptr, result_buf.size,
+					    blob_type, result.sha))
+				die("Unable to add %s to database",
+				    a->path);
+
+			free(result_buf.ptr);
+			result.clean = (merge_status == 0);
+		} else if (S_ISGITLINK(a->mode)) {
+			result.clean = 0;
+			hashcpy(result.sha, a->sha1);
+		} else if (S_ISLNK(a->mode)) {
+			hashcpy(result.sha, a->sha1);
+
+			if (!sha_eq(a->sha1, b->sha1))
+				result.clean = 0;
+		} else {
+			die("unsupported object type in the tree");
+		}
+	}
+
+	return result;
+}
+
+static void conflict_rename_rename(struct merge_options *o,
+				   struct rename *ren1,
+				   const char *branch1,
+				   struct rename *ren2,
+				   const char *branch2)
+{
+	char *del[2];
+	int delp = 0;
+	const char *ren1_dst = ren1->pair->two->path;
+	const char *ren2_dst = ren2->pair->two->path;
+	const char *dst_name1 = ren1_dst;
+	const char *dst_name2 = ren2_dst;
+	if (string_list_has_string(&o->current_directory_set, ren1_dst)) {
+		dst_name1 = del[delp++] = unique_path(o, ren1_dst, branch1);
+		output(o, 1, "%s is a directory in %s adding as %s instead",
+		       ren1_dst, branch2, dst_name1);
+		remove_file(o, 0, ren1_dst, 0);
+	}
+	if (string_list_has_string(&o->current_directory_set, ren2_dst)) {
+		dst_name2 = del[delp++] = unique_path(o, ren2_dst, branch2);
+		output(o, 1, "%s is a directory in %s adding as %s instead",
+		       ren2_dst, branch1, dst_name2);
+		remove_file(o, 0, ren2_dst, 0);
+	}
+	if (o->call_depth) {
+		remove_file_from_cache(dst_name1);
+		remove_file_from_cache(dst_name2);
+		/*
+		 * Uncomment to leave the conflicting names in the resulting tree
+		 *
+		 * update_file(o, 0, ren1->pair->two->sha1, ren1->pair->two->mode, dst_name1);
+		 * update_file(o, 0, ren2->pair->two->sha1, ren2->pair->two->mode, dst_name2);
+		 */
+	} else {
+		update_stages(dst_name1, NULL, ren1->pair->two, NULL, 1);
+		update_stages(dst_name2, NULL, NULL, ren2->pair->two, 1);
+	}
+	while (delp--)
+		free(del[delp]);
+}
+
+static void conflict_rename_dir(struct merge_options *o,
+				struct rename *ren1,
+				const char *branch1)
+{
+	char *new_path = unique_path(o, ren1->pair->two->path, branch1);
+	output(o, 1, "Renaming %s to %s instead", ren1->pair->one->path, new_path);
+	remove_file(o, 0, ren1->pair->two->path, 0);
+	update_file(o, 0, ren1->pair->two->sha1, ren1->pair->two->mode, new_path);
+	free(new_path);
+}
+
+static void conflict_rename_rename_2(struct merge_options *o,
+				     struct rename *ren1,
+				     const char *branch1,
+				     struct rename *ren2,
+				     const char *branch2)
+{
+	char *new_path1 = unique_path(o, ren1->pair->two->path, branch1);
+	char *new_path2 = unique_path(o, ren2->pair->two->path, branch2);
+	output(o, 1, "Renaming %s to %s and %s to %s instead",
+	       ren1->pair->one->path, new_path1,
+	       ren2->pair->one->path, new_path2);
+	remove_file(o, 0, ren1->pair->two->path, 0);
+	update_file(o, 0, ren1->pair->two->sha1, ren1->pair->two->mode, new_path1);
+	update_file(o, 0, ren2->pair->two->sha1, ren2->pair->two->mode, new_path2);
+	free(new_path2);
+	free(new_path1);
+}
+
+static int process_renames(struct merge_options *o,
+			   struct string_list *a_renames,
+			   struct string_list *b_renames)
+{
+	int clean_merge = 1, i, j;
+	struct string_list a_by_dst = {NULL, 0, 0, 0}, b_by_dst = {NULL, 0, 0, 0};
+	const struct rename *sre;
+
+	for (i = 0; i < a_renames->nr; i++) {
+		sre = a_renames->items[i].util;
+		string_list_insert(sre->pair->two->path, &a_by_dst)->util
+			= sre->dst_entry;
+	}
+	for (i = 0; i < b_renames->nr; i++) {
+		sre = b_renames->items[i].util;
+		string_list_insert(sre->pair->two->path, &b_by_dst)->util
+			= sre->dst_entry;
+	}
+
+	for (i = 0, j = 0; i < a_renames->nr || j < b_renames->nr;) {
+		int compare;
+		char *src;
+		struct string_list *renames1, *renames2, *renames2Dst;
+		struct rename *ren1 = NULL, *ren2 = NULL;
+		const char *branch1, *branch2;
+		const char *ren1_src, *ren1_dst;
+
+		if (i >= a_renames->nr) {
+			compare = 1;
+			ren2 = b_renames->items[j++].util;
+		} else if (j >= b_renames->nr) {
+			compare = -1;
+			ren1 = a_renames->items[i++].util;
+		} else {
+			compare = strcmp(a_renames->items[i].string,
+					b_renames->items[j].string);
+			if (compare <= 0)
+				ren1 = a_renames->items[i++].util;
+			if (compare >= 0)
+				ren2 = b_renames->items[j++].util;
+		}
+
+		/* TODO: refactor, so that 1/2 are not needed */
+		if (ren1) {
+			renames1 = a_renames;
+			renames2 = b_renames;
+			renames2Dst = &b_by_dst;
+			branch1 = o->branch1;
+			branch2 = o->branch2;
+		} else {
+			struct rename *tmp;
+			renames1 = b_renames;
+			renames2 = a_renames;
+			renames2Dst = &a_by_dst;
+			branch1 = o->branch2;
+			branch2 = o->branch1;
+			tmp = ren2;
+			ren2 = ren1;
+			ren1 = tmp;
+		}
+		src = ren1->pair->one->path;
+
+		ren1->dst_entry->processed = 1;
+		ren1->src_entry->processed = 1;
+
+		if (ren1->processed)
+			continue;
+		ren1->processed = 1;
+
+		ren1_src = ren1->pair->one->path;
+		ren1_dst = ren1->pair->two->path;
+
+		if (ren2) {
+			const char *ren2_src = ren2->pair->one->path;
+			const char *ren2_dst = ren2->pair->two->path;
+			/* Renamed in 1 and renamed in 2 */
+			if (strcmp(ren1_src, ren2_src) != 0)
+				die("ren1.src != ren2.src");
+			ren2->dst_entry->processed = 1;
+			ren2->processed = 1;
+			if (strcmp(ren1_dst, ren2_dst) != 0) {
+				clean_merge = 0;
+				output(o, 1, "CONFLICT (rename/rename): "
+				       "Rename \"%s\"->\"%s\" in branch \"%s\" "
+				       "rename \"%s\"->\"%s\" in \"%s\"%s",
+				       src, ren1_dst, branch1,
+				       src, ren2_dst, branch2,
+				       o->call_depth ? " (left unresolved)": "");
+				if (o->call_depth) {
+					remove_file_from_cache(src);
+					update_file(o, 0, ren1->pair->one->sha1,
+						    ren1->pair->one->mode, src);
+				}
+				conflict_rename_rename(o, ren1, branch1, ren2, branch2);
+			} else {
+				struct merge_file_info mfi;
+				remove_file(o, 1, ren1_src, 1);
+				mfi = merge_file(o,
+						 ren1->pair->one,
+						 ren1->pair->two,
+						 ren2->pair->two,
+						 branch1,
+						 branch2);
+				if (mfi.merge || !mfi.clean)
+					output(o, 1, "Renaming %s->%s", src, ren1_dst);
+
+				if (mfi.merge)
+					output(o, 2, "Auto-merging %s", ren1_dst);
+
+				if (!mfi.clean) {
+					output(o, 1, "CONFLICT (content): merge conflict in %s",
+					       ren1_dst);
+					clean_merge = 0;
+
+					if (!o->call_depth)
+						update_stages(ren1_dst,
+							      ren1->pair->one,
+							      ren1->pair->two,
+							      ren2->pair->two,
+							      1 /* clear */);
+				}
+				update_file(o, mfi.clean, mfi.sha, mfi.mode, ren1_dst);
+			}
+		} else {
+			/* Renamed in 1, maybe changed in 2 */
+			struct string_list_item *item;
+			/* we only use sha1 and mode of these */
+			struct diff_filespec src_other, dst_other;
+			int try_merge, stage = a_renames == renames1 ? 3: 2;
+
+			remove_file(o, 1, ren1_src, o->call_depth || stage == 3);
+
+			hashcpy(src_other.sha1, ren1->src_entry->stages[stage].sha);
+			src_other.mode = ren1->src_entry->stages[stage].mode;
+			hashcpy(dst_other.sha1, ren1->dst_entry->stages[stage].sha);
+			dst_other.mode = ren1->dst_entry->stages[stage].mode;
+
+			try_merge = 0;
+
+			if (string_list_has_string(&o->current_directory_set, ren1_dst)) {
+				clean_merge = 0;
+				output(o, 1, "CONFLICT (rename/directory): Rename %s->%s in %s "
+				       " directory %s added in %s",
+				       ren1_src, ren1_dst, branch1,
+				       ren1_dst, branch2);
+				conflict_rename_dir(o, ren1, branch1);
+			} else if (sha_eq(src_other.sha1, null_sha1)) {
+				clean_merge = 0;
+				output(o, 1, "CONFLICT (rename/delete): Rename %s->%s in %s "
+				       "and deleted in %s",
+				       ren1_src, ren1_dst, branch1,
+				       branch2);
+				update_file(o, 0, ren1->pair->two->sha1, ren1->pair->two->mode, ren1_dst);
+			} else if (!sha_eq(dst_other.sha1, null_sha1)) {
+				const char *new_path;
+				clean_merge = 0;
+				try_merge = 1;
+				output(o, 1, "CONFLICT (rename/add): Rename %s->%s in %s. "
+				       "%s added in %s",
+				       ren1_src, ren1_dst, branch1,
+				       ren1_dst, branch2);
+				new_path = unique_path(o, ren1_dst, branch2);
+				output(o, 1, "Adding as %s instead", new_path);
+				update_file(o, 0, dst_other.sha1, dst_other.mode, new_path);
+			} else if ((item = string_list_lookup(ren1_dst, renames2Dst))) {
+				ren2 = item->util;
+				clean_merge = 0;
+				ren2->processed = 1;
+				output(o, 1, "CONFLICT (rename/rename): "
+				       "Rename %s->%s in %s. "
+				       "Rename %s->%s in %s",
+				       ren1_src, ren1_dst, branch1,
+				       ren2->pair->one->path, ren2->pair->two->path, branch2);
+				conflict_rename_rename_2(o, ren1, branch1, ren2, branch2);
+			} else
+				try_merge = 1;
+
+			if (try_merge) {
+				struct diff_filespec *one, *a, *b;
+				struct merge_file_info mfi;
+				src_other.path = (char *)ren1_src;
+
+				one = ren1->pair->one;
+				if (a_renames == renames1) {
+					a = ren1->pair->two;
+					b = &src_other;
+				} else {
+					b = ren1->pair->two;
+					a = &src_other;
+				}
+				mfi = merge_file(o, one, a, b,
+						o->branch1, o->branch2);
+
+				if (mfi.clean &&
+				    sha_eq(mfi.sha, ren1->pair->two->sha1) &&
+				    mfi.mode == ren1->pair->two->mode)
+					/*
+					 * This messaged is part of
+					 * t6022 test. If you change
+					 * it update the test too.
+					 */
+					output(o, 3, "Skipped %s (merged same as existing)", ren1_dst);
+				else {
+					if (mfi.merge || !mfi.clean)
+						output(o, 1, "Renaming %s => %s", ren1_src, ren1_dst);
+					if (mfi.merge)
+						output(o, 2, "Auto-merging %s", ren1_dst);
+					if (!mfi.clean) {
+						output(o, 1, "CONFLICT (rename/modify): Merge conflict in %s",
+						       ren1_dst);
+						clean_merge = 0;
+
+						if (!o->call_depth)
+							update_stages(ren1_dst,
+								      one, a, b, 1);
+					}
+					update_file(o, mfi.clean, mfi.sha, mfi.mode, ren1_dst);
+				}
+			}
+		}
+	}
+	string_list_clear(&a_by_dst, 0);
+	string_list_clear(&b_by_dst, 0);
+
+	return clean_merge;
+}
+
+static unsigned char *stage_sha(const unsigned char *sha, unsigned mode)
+{
+	return (is_null_sha1(sha) || mode == 0) ? NULL: (unsigned char *)sha;
+}
+
+/* Per entry merge function */
+static int process_entry(struct merge_options *o,
+			 const char *path, struct stage_data *entry)
+{
+	/*
+	printf("processing entry, clean cache: %s\n", index_only ? "yes": "no");
+	print_index_entry("\tpath: ", entry);
+	*/
+	int clean_merge = 1;
+	unsigned o_mode = entry->stages[1].mode;
+	unsigned a_mode = entry->stages[2].mode;
+	unsigned b_mode = entry->stages[3].mode;
+	unsigned char *o_sha = stage_sha(entry->stages[1].sha, o_mode);
+	unsigned char *a_sha = stage_sha(entry->stages[2].sha, a_mode);
+	unsigned char *b_sha = stage_sha(entry->stages[3].sha, b_mode);
+
+	if (o_sha && (!a_sha || !b_sha)) {
+		/* Case A: Deleted in one */
+		if ((!a_sha && !b_sha) ||
+		    (sha_eq(a_sha, o_sha) && !b_sha) ||
+		    (!a_sha && sha_eq(b_sha, o_sha))) {
+			/* Deleted in both or deleted in one and
+			 * unchanged in the other */
+			if (a_sha)
+				output(o, 2, "Removing %s", path);
+			/* do not touch working file if it did not exist */
+			remove_file(o, 1, path, !a_sha);
+		} else {
+			/* Deleted in one and changed in the other */
+			clean_merge = 0;
+			if (!a_sha) {
+				output(o, 1, "CONFLICT (delete/modify): %s deleted in %s "
+				       "and modified in %s. Version %s of %s left in tree.",
+				       path, o->branch1,
+				       o->branch2, o->branch2, path);
+				update_file(o, 0, b_sha, b_mode, path);
+			} else {
+				output(o, 1, "CONFLICT (delete/modify): %s deleted in %s "
+				       "and modified in %s. Version %s of %s left in tree.",
+				       path, o->branch2,
+				       o->branch1, o->branch1, path);
+				update_file(o, 0, a_sha, a_mode, path);
+			}
+		}
+
+	} else if ((!o_sha && a_sha && !b_sha) ||
+		   (!o_sha && !a_sha && b_sha)) {
+		/* Case B: Added in one. */
+		const char *add_branch;
+		const char *other_branch;
+		unsigned mode;
+		const unsigned char *sha;
+		const char *conf;
+
+		if (a_sha) {
+			add_branch = o->branch1;
+			other_branch = o->branch2;
+			mode = a_mode;
+			sha = a_sha;
+			conf = "file/directory";
+		} else {
+			add_branch = o->branch2;
+			other_branch = o->branch1;
+			mode = b_mode;
+			sha = b_sha;
+			conf = "directory/file";
+		}
+		if (string_list_has_string(&o->current_directory_set, path)) {
+			const char *new_path = unique_path(o, path, add_branch);
+			clean_merge = 0;
+			output(o, 1, "CONFLICT (%s): There is a directory with name %s in %s. "
+			       "Adding %s as %s",
+			       conf, path, other_branch, path, new_path);
+			remove_file(o, 0, path, 0);
+			update_file(o, 0, sha, mode, new_path);
+		} else {
+			output(o, 2, "Adding %s", path);
+			update_file(o, 1, sha, mode, path);
+		}
+	} else if (a_sha && b_sha) {
+		/* Case C: Added in both (check for same permissions) and */
+		/* case D: Modified in both, but differently. */
+		const char *reason = "content";
+		struct merge_file_info mfi;
+		struct diff_filespec one, a, b;
+
+		if (!o_sha) {
+			reason = "add/add";
+			o_sha = (unsigned char *)null_sha1;
+		}
+		output(o, 2, "Auto-merging %s", path);
+		one.path = a.path = b.path = (char *)path;
+		hashcpy(one.sha1, o_sha);
+		one.mode = o_mode;
+		hashcpy(a.sha1, a_sha);
+		a.mode = a_mode;
+		hashcpy(b.sha1, b_sha);
+		b.mode = b_mode;
+
+		mfi = merge_file(o, &one, &a, &b,
+				 o->branch1, o->branch2);
+
+		clean_merge = mfi.clean;
+		if (mfi.clean)
+			update_file(o, 1, mfi.sha, mfi.mode, path);
+		else if (S_ISGITLINK(mfi.mode))
+			output(o, 1, "CONFLICT (submodule): Merge conflict in %s "
+			       "- needs %s", path, sha1_to_hex(b.sha1));
+		else {
+			output(o, 1, "CONFLICT (%s): Merge conflict in %s",
+					reason, path);
+
+			if (o->call_depth)
+				update_file(o, 0, mfi.sha, mfi.mode, path);
+			else
+				update_file_flags(o, mfi.sha, mfi.mode, path,
+					      0 /* update_cache */, 1 /* update_working_directory */);
+		}
+	} else if (!o_sha && !a_sha && !b_sha) {
+		/*
+		 * this entry was deleted altogether. a_mode == 0 means
+		 * we had that path and want to actively remove it.
+		 */
+		remove_file(o, 1, path, !a_mode);
+	} else
+		die("Fatal merge failure, shouldn't happen.");
+
+	return clean_merge;
+}
+
+int merge_trees(struct merge_options *o,
+		struct tree *head,
+		struct tree *merge,
+		struct tree *common,
+		struct tree **result)
+{
+	int code, clean;
+
+	if (o->subtree_merge) {
+		merge = shift_tree_object(head, merge);
+		common = shift_tree_object(head, common);
+	}
+
+	if (sha_eq(common->object.sha1, merge->object.sha1)) {
+		output(o, 0, "Already uptodate!");
+		*result = head;
+		return 1;
+	}
+
+	code = git_merge_trees(o->call_depth, common, head, merge);
+
+	if (code != 0)
+		die("merging of trees %s and %s failed",
+		    sha1_to_hex(head->object.sha1),
+		    sha1_to_hex(merge->object.sha1));
+
+	if (unmerged_cache()) {
+		struct string_list *entries, *re_head, *re_merge;
+		int i;
+		string_list_clear(&o->current_file_set, 1);
+		string_list_clear(&o->current_directory_set, 1);
+		get_files_dirs(o, head);
+		get_files_dirs(o, merge);
+
+		entries = get_unmerged();
+		re_head  = get_renames(o, head, common, head, merge, entries);
+		re_merge = get_renames(o, merge, common, head, merge, entries);
+		clean = process_renames(o, re_head, re_merge);
+		for (i = 0; i < entries->nr; i++) {
+			const char *path = entries->items[i].string;
+			struct stage_data *e = entries->items[i].util;
+			if (!e->processed
+				&& !process_entry(o, path, e))
+				clean = 0;
+		}
+
+		string_list_clear(re_merge, 0);
+		string_list_clear(re_head, 0);
+		string_list_clear(entries, 1);
+
+	}
+	else
+		clean = 1;
+
+	if (o->call_depth)
+		*result = write_tree_from_memory(o);
+
+	return clean;
+}
+
+static struct commit_list *reverse_commit_list(struct commit_list *list)
+{
+	struct commit_list *next = NULL, *current, *backup;
+	for (current = list; current; current = backup) {
+		backup = current->next;
+		current->next = next;
+		next = current;
+	}
+	return next;
+}
+
+/*
+ * Merge the commits h1 and h2, return the resulting virtual
+ * commit object and a flag indicating the cleanness of the merge.
+ */
+int merge_recursive(struct merge_options *o,
+		    struct commit *h1,
+		    struct commit *h2,
+		    struct commit_list *ca,
+		    struct commit **result)
+{
+	struct commit_list *iter;
+	struct commit *merged_common_ancestors;
+	struct tree *mrtree = mrtree;
+	int clean;
+
+	if (show(o, 4)) {
+		output(o, 4, "Merging:");
+		output_commit_title(o, h1);
+		output_commit_title(o, h2);
+	}
+
+	if (!ca) {
+		ca = get_merge_bases(h1, h2, 1);
+		ca = reverse_commit_list(ca);
+	}
+
+	if (show(o, 5)) {
+		output(o, 5, "found %u common ancestor(s):", commit_list_count(ca));
+		for (iter = ca; iter; iter = iter->next)
+			output_commit_title(o, iter->item);
+	}
+
+	merged_common_ancestors = pop_commit(&ca);
+	if (merged_common_ancestors == NULL) {
+		/* if there is no common ancestor, make an empty tree */
+		struct tree *tree = xcalloc(1, sizeof(struct tree));
+
+		tree->object.parsed = 1;
+		tree->object.type = OBJ_TREE;
+		pretend_sha1_file(NULL, 0, OBJ_TREE, tree->object.sha1);
+		merged_common_ancestors = make_virtual_commit(tree, "ancestor");
+	}
+
+	for (iter = ca; iter; iter = iter->next) {
+		const char *saved_b1, *saved_b2;
+		o->call_depth++;
+		/*
+		 * When the merge fails, the result contains files
+		 * with conflict markers. The cleanness flag is
+		 * ignored, it was never actually used, as result of
+		 * merge_trees has always overwritten it: the committed
+		 * "conflicts" were already resolved.
+		 */
+		discard_cache();
+		saved_b1 = o->branch1;
+		saved_b2 = o->branch2;
+		o->branch1 = "Temporary merge branch 1";
+		o->branch2 = "Temporary merge branch 2";
+		merge_recursive(o, merged_common_ancestors, iter->item,
+				NULL, &merged_common_ancestors);
+		o->branch1 = saved_b1;
+		o->branch2 = saved_b2;
+		o->call_depth--;
+
+		if (!merged_common_ancestors)
+			die("merge returned no commit");
+	}
+
+	discard_cache();
+	if (!o->call_depth)
+		read_cache();
+
+	clean = merge_trees(o, h1->tree, h2->tree, merged_common_ancestors->tree,
+			    &mrtree);
+
+	if (o->call_depth) {
+		*result = make_virtual_commit(mrtree, "merged tree");
+		commit_list_insert(h1, &(*result)->parents);
+		commit_list_insert(h2, &(*result)->parents->next);
+	}
+	flush_output(o);
+	return clean;
+}
+
+static struct commit *get_ref(const unsigned char *sha1, const char *name)
+{
+	struct object *object;
+
+	object = deref_tag(parse_object(sha1), name, strlen(name));
+	if (!object)
+		return NULL;
+	if (object->type == OBJ_TREE)
+		return make_virtual_commit((struct tree*)object, name);
+	if (object->type != OBJ_COMMIT)
+		return NULL;
+	if (parse_commit((struct commit *)object))
+		return NULL;
+	return (struct commit *)object;
+}
+
+int merge_recursive_generic(struct merge_options *o,
+			    const unsigned char *head,
+			    const unsigned char *merge,
+			    int num_base_list,
+			    const unsigned char **base_list,
+			    struct commit **result)
+{
+	int clean, index_fd;
+	struct lock_file *lock = xcalloc(1, sizeof(struct lock_file));
+	struct commit *head_commit = get_ref(head, o->branch1);
+	struct commit *next_commit = get_ref(merge, o->branch2);
+	struct commit_list *ca = NULL;
+
+	if (base_list) {
+		int i;
+		for (i = 0; i < num_base_list; ++i) {
+			struct commit *base;
+			if (!(base = get_ref(base_list[i], sha1_to_hex(base_list[i]))))
+				return error("Could not parse object '%s'",
+					sha1_to_hex(base_list[i]));
+			commit_list_insert(base, &ca);
+		}
+	}
+
+	index_fd = hold_locked_index(lock, 1);
+	clean = merge_recursive(o, head_commit, next_commit, ca,
+			result);
+	if (active_cache_changed &&
+			(write_cache(index_fd, active_cache, active_nr) ||
+			 commit_locked_index(lock)))
+		return error("Unable to write index.");
+
+	return clean ? 0 : 1;
+}
+
+static int merge_recursive_config(const char *var, const char *value, void *cb)
+{
+	struct merge_options *o = cb;
+	if (!strcasecmp(var, "merge.verbosity")) {
+		o->verbosity = git_config_int(var, value);
+		return 0;
+	}
+	if (!strcasecmp(var, "diff.renamelimit")) {
+		o->diff_rename_limit = git_config_int(var, value);
+		return 0;
+	}
+	if (!strcasecmp(var, "merge.renamelimit")) {
+		o->merge_rename_limit = git_config_int(var, value);
+		return 0;
+	}
+	return git_default_config(var, value, cb);
+}
+
+void init_merge_options(struct merge_options *o)
+{
+	memset(o, 0, sizeof(struct merge_options));
+	o->verbosity = 2;
+	o->buffer_output = 1;
+	o->diff_rename_limit = -1;
+	o->merge_rename_limit = -1;
+	git_config(merge_recursive_config, o);
+	if (getenv("GIT_MERGE_VERBOSITY"))
+		o->verbosity =
+			strtol(getenv("GIT_MERGE_VERBOSITY"), NULL, 10);
+	if (o->verbosity >= 5)
+		o->buffer_output = 0;
+	strbuf_init(&o->obuf, 0);
+	memset(&o->current_file_set, 0, sizeof(struct string_list));
+	o->current_file_set.strdup_strings = 1;
+	memset(&o->current_directory_set, 0, sizeof(struct string_list));
+	o->current_directory_set.strdup_strings = 1;
+}
diff --git a/merge-recursive.h b/merge-recursive.h
index f37630a8ad..fd138ca140 100644
--- a/merge-recursive.h
+++ b/merge-recursive.h
@@ -1,20 +1,48 @@
 #ifndef MERGE_RECURSIVE_H
 #define MERGE_RECURSIVE_H
 
-int merge_recursive(struct commit *h1,
+#include "string-list.h"
+
+struct merge_options {
+	const char *branch1;
+	const char *branch2;
+	unsigned subtree_merge : 1;
+	unsigned buffer_output : 1;
+	int verbosity;
+	int diff_rename_limit;
+	int merge_rename_limit;
+	int call_depth;
+	struct strbuf obuf;
+	struct string_list current_file_set;
+	struct string_list current_directory_set;
+};
+
+/* merge_trees() but with recursive ancestor consolidation */
+int merge_recursive(struct merge_options *o,
+		    struct commit *h1,
 		    struct commit *h2,
-		    const char *branch1,
-		    const char *branch2,
 		    struct commit_list *ancestors,
 		    struct commit **result);
 
-int merge_trees(struct tree *head,
+/* rename-detecting three-way merge, no recursion */
+int merge_trees(struct merge_options *o,
+		struct tree *head,
 		struct tree *merge,
 		struct tree *common,
-		const char *branch1,
-		const char *branch2,
 		struct tree **result);
 
-struct tree *write_tree_from_memory(void);
+/*
+ * "git-merge-recursive" can be fed trees; wrap them into
+ * virtual commits and call merge_recursive() proper.
+ */
+int merge_recursive_generic(struct merge_options *o,
+			    const unsigned char *head,
+			    const unsigned char *merge,
+			    int num_ca,
+			    const unsigned char **ca,
+			    struct commit **result);
+
+void init_merge_options(struct merge_options *o);
+struct tree *write_tree_from_memory(struct merge_options *o);
 
 #endif
diff --git a/merge-tree.c b/merge-tree.c
index 02fc10f7e6..2d1413efbb 100644
--- a/merge-tree.c
+++ b/merge-tree.c
@@ -158,9 +158,8 @@ static int same_entry(struct name_entry *a, struct name_entry *b)
 
 static struct merge_list *create_entry(unsigned stage, unsigned mode, const unsigned char *sha1, const char *path)
 {
-	struct merge_list *res = xmalloc(sizeof(*res));
+	struct merge_list *res = xcalloc(1, sizeof(*res));
 
-	memset(res, 0, sizeof(*res));
 	res->stage = stage;
 	res->path = path;
 	res->mode = mode;
diff --git a/mozilla-sha1/sha1.c b/mozilla-sha1/sha1.c
index 3f06b83567..95a4ebf496 100644
--- a/mozilla-sha1/sha1.c
+++ b/mozilla-sha1/sha1.c
@@ -35,9 +35,9 @@
 
 #include "sha1.h"
 
-static void shaHashBlock(SHA_CTX *ctx);
+static void shaHashBlock(moz_SHA_CTX *ctx);
 
-void SHA1_Init(SHA_CTX *ctx) {
+void moz_SHA1_Init(moz_SHA_CTX *ctx) {
   int i;
 
   ctx->lenW = 0;
@@ -56,7 +56,7 @@ void SHA1_Init(SHA_CTX *ctx) {
 }
 
 
-void SHA1_Update(SHA_CTX *ctx, const void *_dataIn, int len) {
+void moz_SHA1_Update(moz_SHA_CTX *ctx, const void *_dataIn, int len) {
   const unsigned char *dataIn = _dataIn;
   int i;
 
@@ -75,7 +75,7 @@ void SHA1_Update(SHA_CTX *ctx, const void *_dataIn, int len) {
 }
 
 
-void SHA1_Final(unsigned char hashout[20], SHA_CTX *ctx) {
+void moz_SHA1_Final(unsigned char hashout[20], moz_SHA_CTX *ctx) {
   unsigned char pad0x80 = 0x80;
   unsigned char pad0x00 = 0x00;
   unsigned char padlen[8];
@@ -91,10 +91,10 @@ void SHA1_Final(unsigned char hashout[20], SHA_CTX *ctx) {
   padlen[5] = (unsigned char)((ctx->sizeLo >> 16) & 255);
   padlen[6] = (unsigned char)((ctx->sizeLo >> 8) & 255);
   padlen[7] = (unsigned char)((ctx->sizeLo >> 0) & 255);
-  SHA1_Update(ctx, &pad0x80, 1);
+  moz_SHA1_Update(ctx, &pad0x80, 1);
   while (ctx->lenW != 56)
-    SHA1_Update(ctx, &pad0x00, 1);
-  SHA1_Update(ctx, padlen, 8);
+    moz_SHA1_Update(ctx, &pad0x00, 1);
+  moz_SHA1_Update(ctx, padlen, 8);
 
   /* Output hash
    */
@@ -106,13 +106,13 @@ void SHA1_Final(unsigned char hashout[20], SHA_CTX *ctx) {
   /*
    *  Re-initialize the context (also zeroizes contents)
    */
-  SHA1_Init(ctx);
+  moz_SHA1_Init(ctx);
 }
 
 
 #define SHA_ROT(X,n) (((X) << (n)) | ((X) >> (32-(n))))
 
-static void shaHashBlock(SHA_CTX *ctx) {
+static void shaHashBlock(moz_SHA_CTX *ctx) {
   int t;
   unsigned int A,B,C,D,E,TEMP;
 
diff --git a/mozilla-sha1/sha1.h b/mozilla-sha1/sha1.h
index 16f2d3d43c..aa48a46cf7 100644
--- a/mozilla-sha1/sha1.h
+++ b/mozilla-sha1/sha1.h
@@ -38,8 +38,13 @@ typedef struct {
   unsigned int W[80];
   int lenW;
   unsigned int sizeHi,sizeLo;
-} SHA_CTX;
+} moz_SHA_CTX;
 
-void SHA1_Init(SHA_CTX *ctx);
-void SHA1_Update(SHA_CTX *ctx, const void *dataIn, int len);
-void SHA1_Final(unsigned char hashout[20], SHA_CTX *ctx);
+void moz_SHA1_Init(moz_SHA_CTX *ctx);
+void moz_SHA1_Update(moz_SHA_CTX *ctx, const void *dataIn, int len);
+void moz_SHA1_Final(unsigned char hashout[20], moz_SHA_CTX *ctx);
+
+#define git_SHA_CTX	moz_SHA_CTX
+#define git_SHA1_Init	moz_SHA1_Init
+#define git_SHA1_Update	moz_SHA1_Update
+#define git_SHA1_Final	moz_SHA1_Final
diff --git a/pack-check.c b/pack-check.c
index f596bf2db5..90c33b1b84 100644
--- a/pack-check.c
+++ b/pack-check.c
@@ -47,7 +47,7 @@ static int verify_packfile(struct packed_git *p,
 {
 	off_t index_size = p->index_size;
 	const unsigned char *index_base = p->index_data;
-	SHA_CTX ctx;
+	git_SHA_CTX ctx;
 	unsigned char sha1[20], *pack_sig;
 	off_t offset = 0, pack_sig_ofs = p->pack_size - 20;
 	uint32_t nr_objects, i;
@@ -60,16 +60,16 @@ static int verify_packfile(struct packed_git *p,
 	 * immediately.
 	 */
 
-	SHA1_Init(&ctx);
+	git_SHA1_Init(&ctx);
 	while (offset < pack_sig_ofs) {
 		unsigned int remaining;
 		unsigned char *in = use_pack(p, w_curs, offset, &remaining);
 		offset += remaining;
 		if (offset > pack_sig_ofs)
 			remaining -= (unsigned int)(offset - pack_sig_ofs);
-		SHA1_Update(&ctx, in, remaining);
+		git_SHA1_Update(&ctx, in, remaining);
 	}
-	SHA1_Final(sha1, &ctx);
+	git_SHA1_Final(sha1, &ctx);
 	pack_sig = use_pack(p, w_curs, pack_sig_ofs, NULL);
 	if (hashcmp(sha1, pack_sig))
 		err = error("%s SHA1 checksum mismatch",
@@ -135,7 +135,7 @@ int verify_pack(struct packed_git *p)
 {
 	off_t index_size;
 	const unsigned char *index_base;
-	SHA_CTX ctx;
+	git_SHA_CTX ctx;
 	unsigned char sha1[20];
 	int err = 0;
 	struct pack_window *w_curs = NULL;
@@ -146,9 +146,9 @@ int verify_pack(struct packed_git *p)
 	index_base = p->index_data;
 
 	/* Verify SHA1 sum of the index file */
-	SHA1_Init(&ctx);
-	SHA1_Update(&ctx, index_base, (unsigned int)(index_size - 20));
-	SHA1_Final(sha1, &ctx);
+	git_SHA1_Init(&ctx);
+	git_SHA1_Update(&ctx, index_base, (unsigned int)(index_size - 20));
+	git_SHA1_Final(sha1, &ctx);
 	if (hashcmp(sha1, index_base + index_size - 20))
 		err = error("Packfile index for %s SHA1 mismatch",
 			    p->pack_name);
diff --git a/pack-write.c b/pack-write.c
index 939ed56362..b426006c58 100644
--- a/pack-write.c
+++ b/pack-write.c
@@ -25,7 +25,7 @@ char *write_idx_file(char *index_name, struct pack_idx_entry **objects,
 	off_t last_obj_offset = 0;
 	uint32_t array[256];
 	int i, fd;
-	SHA_CTX ctx;
+	git_SHA_CTX ctx;
 	uint32_t index_version;
 
 	if (nr_objects) {
@@ -45,7 +45,7 @@ char *write_idx_file(char *index_name, struct pack_idx_entry **objects,
 	if (!index_name) {
 		static char tmpfile[PATH_MAX];
 		snprintf(tmpfile, sizeof(tmpfile),
-			 "%s/tmp_idx_XXXXXX", get_object_directory());
+			 "%s/pack/tmp_idx_XXXXXX", get_object_directory());
 		fd = xmkstemp(tmpfile);
 		index_name = xstrdup(tmpfile);
 	} else {
@@ -86,7 +86,7 @@ char *write_idx_file(char *index_name, struct pack_idx_entry **objects,
 	sha1write(f, array, 256 * 4);
 
 	/* compute the SHA1 hash of sorted object names. */
-	SHA1_Init(&ctx);
+	git_SHA1_Init(&ctx);
 
 	/*
 	 * Write the actual SHA1 entries..
@@ -99,7 +99,7 @@ char *write_idx_file(char *index_name, struct pack_idx_entry **objects,
 			sha1write(f, &offset, 4);
 		}
 		sha1write(f, obj->sha1, 20);
-		SHA1_Update(&ctx, obj->sha1, 20);
+		git_SHA1_Update(&ctx, obj->sha1, 20);
 	}
 
 	if (index_version >= 2) {
@@ -140,7 +140,7 @@ char *write_idx_file(char *index_name, struct pack_idx_entry **objects,
 
 	sha1write(f, sha1, 20);
 	sha1close(f, NULL, CSUM_FSYNC);
-	SHA1_Final(sha1, &ctx);
+	git_SHA1_Final(sha1, &ctx);
 	return index_name;
 }
 
@@ -168,12 +168,12 @@ void fixup_pack_header_footer(int pack_fd,
 			 off_t partial_pack_offset)
 {
 	int aligned_sz, buf_sz = 8 * 1024;
-	SHA_CTX old_sha1_ctx, new_sha1_ctx;
+	git_SHA_CTX old_sha1_ctx, new_sha1_ctx;
 	struct pack_header hdr;
 	char *buf;
 
-	SHA1_Init(&old_sha1_ctx);
-	SHA1_Init(&new_sha1_ctx);
+	git_SHA1_Init(&old_sha1_ctx);
+	git_SHA1_Init(&new_sha1_ctx);
 
 	if (lseek(pack_fd, 0, SEEK_SET) != 0)
 		die("Failed seeking to start of %s: %s", pack_name, strerror(errno));
@@ -181,9 +181,9 @@ void fixup_pack_header_footer(int pack_fd,
 		die("Unable to reread header of %s: %s", pack_name, strerror(errno));
 	if (lseek(pack_fd, 0, SEEK_SET) != 0)
 		die("Failed seeking to start of %s: %s", pack_name, strerror(errno));
-	SHA1_Update(&old_sha1_ctx, &hdr, sizeof(hdr));
+	git_SHA1_Update(&old_sha1_ctx, &hdr, sizeof(hdr));
 	hdr.hdr_entries = htonl(object_count);
-	SHA1_Update(&new_sha1_ctx, &hdr, sizeof(hdr));
+	git_SHA1_Update(&new_sha1_ctx, &hdr, sizeof(hdr));
 	write_or_die(pack_fd, &hdr, sizeof(hdr));
 	partial_pack_offset -= sizeof(hdr);
 
@@ -198,7 +198,7 @@ void fixup_pack_header_footer(int pack_fd,
 			break;
 		if (n < 0)
 			die("Failed to checksum %s: %s", pack_name, strerror(errno));
-		SHA1_Update(&new_sha1_ctx, buf, n);
+		git_SHA1_Update(&new_sha1_ctx, buf, n);
 
 		aligned_sz -= n;
 		if (!aligned_sz)
@@ -207,11 +207,11 @@ void fixup_pack_header_footer(int pack_fd,
 		if (!partial_pack_sha1)
 			continue;
 
-		SHA1_Update(&old_sha1_ctx, buf, n);
+		git_SHA1_Update(&old_sha1_ctx, buf, n);
 		partial_pack_offset -= n;
 		if (partial_pack_offset == 0) {
 			unsigned char sha1[20];
-			SHA1_Final(sha1, &old_sha1_ctx);
+			git_SHA1_Final(sha1, &old_sha1_ctx);
 			if (hashcmp(sha1, partial_pack_sha1) != 0)
 				die("Unexpected checksum for %s "
 				    "(disk corruption?)", pack_name);
@@ -220,7 +220,7 @@ void fixup_pack_header_footer(int pack_fd,
 			 * pack, which also means making partial_pack_offset
 			 * big enough not to matter anymore.
 			 */
-			SHA1_Init(&old_sha1_ctx);
+			git_SHA1_Init(&old_sha1_ctx);
 			partial_pack_offset = ~partial_pack_offset;
 			partial_pack_offset -= MSB(partial_pack_offset, 1);
 		}
@@ -228,8 +228,8 @@ void fixup_pack_header_footer(int pack_fd,
 	free(buf);
 
 	if (partial_pack_sha1)
-		SHA1_Final(partial_pack_sha1, &old_sha1_ctx);
-	SHA1_Final(new_pack_sha1, &new_sha1_ctx);
+		git_SHA1_Final(partial_pack_sha1, &old_sha1_ctx);
+	git_SHA1_Final(new_pack_sha1, &new_sha1_ctx);
 	write_or_die(pack_fd, new_pack_sha1, 20);
 	fsync_or_die(pack_fd, pack_name);
 }
diff --git a/patch-id.c b/patch-id.c
index 9349bc5580..871f1d20c0 100644
--- a/patch-id.c
+++ b/patch-id.c
@@ -1,6 +1,6 @@
 #include "cache.h"
 
-static void flush_current_id(int patchlen, unsigned char *id, SHA_CTX *c)
+static void flush_current_id(int patchlen, unsigned char *id, git_SHA_CTX *c)
 {
 	unsigned char result[20];
 	char name[50];
@@ -8,10 +8,10 @@ static void flush_current_id(int patchlen, unsigned char *id, SHA_CTX *c)
 	if (!patchlen)
 		return;
 
-	SHA1_Final(result, c);
+	git_SHA1_Final(result, c);
 	memcpy(name, sha1_to_hex(id), 41);
 	printf("%s %s\n", sha1_to_hex(result), name);
-	SHA1_Init(c);
+	git_SHA1_Init(c);
 }
 
 static int remove_space(char *line)
@@ -31,10 +31,10 @@ static void generate_id_list(void)
 {
 	static unsigned char sha1[20];
 	static char line[1000];
-	SHA_CTX ctx;
+	git_SHA_CTX ctx;
 	int patchlen = 0;
 
-	SHA1_Init(&ctx);
+	git_SHA1_Init(&ctx);
 	while (fgets(line, sizeof(line), stdin) != NULL) {
 		unsigned char n[20];
 		char *p = line;
@@ -67,7 +67,7 @@ static void generate_id_list(void)
 		/* Compute the sha without whitespace */
 		len = remove_space(line);
 		patchlen += len;
-		SHA1_Update(&ctx, line, len);
+		git_SHA1_Update(&ctx, line, len);
 	}
 	flush_current_id(patchlen, sha1, &ctx);
 }
diff --git a/ppc/sha1.c b/ppc/sha1.c
index 738e36c1e8..ec6a1926d4 100644
--- a/ppc/sha1.c
+++ b/ppc/sha1.c
@@ -10,10 +10,10 @@
 #include <string.h>
 #include "sha1.h"
 
-extern void sha1_core(uint32_t *hash, const unsigned char *p,
-		      unsigned int nblocks);
+extern void ppc_sha1_core(uint32_t *hash, const unsigned char *p,
+			  unsigned int nblocks);
 
-int SHA1_Init(SHA_CTX *c)
+int ppc_SHA1_Init(ppc_SHA_CTX *c)
 {
 	c->hash[0] = 0x67452301;
 	c->hash[1] = 0xEFCDAB89;
@@ -25,7 +25,7 @@ int SHA1_Init(SHA_CTX *c)
 	return 0;
 }
 
-int SHA1_Update(SHA_CTX *c, const void *ptr, unsigned long n)
+int ppc_SHA1_Update(ppc_SHA_CTX *c, const void *ptr, unsigned long n)
 {
 	unsigned long nb;
 	const unsigned char *p = ptr;
@@ -38,12 +38,12 @@ int SHA1_Update(SHA_CTX *c, const void *ptr, unsigned long n)
 				nb = n;
 			memcpy(&c->buf.b[c->cnt], p, nb);
 			if ((c->cnt += nb) == 64) {
-				sha1_core(c->hash, c->buf.b, 1);
+				ppc_sha1_core(c->hash, c->buf.b, 1);
 				c->cnt = 0;
 			}
 		} else {
 			nb = n >> 6;
-			sha1_core(c->hash, p, nb);
+			ppc_sha1_core(c->hash, p, nb);
 			nb <<= 6;
 		}
 		n -= nb;
@@ -52,7 +52,7 @@ int SHA1_Update(SHA_CTX *c, const void *ptr, unsigned long n)
 	return 0;
 }
 
-int SHA1_Final(unsigned char *hash, SHA_CTX *c)
+int ppc_SHA1_Final(unsigned char *hash, ppc_SHA_CTX *c)
 {
 	unsigned int cnt = c->cnt;
 
@@ -60,13 +60,13 @@ int SHA1_Final(unsigned char *hash, SHA_CTX *c)
 	if (cnt > 56) {
 		if (cnt < 64)
 			memset(&c->buf.b[cnt], 0, 64 - cnt);
-		sha1_core(c->hash, c->buf.b, 1);
+		ppc_sha1_core(c->hash, c->buf.b, 1);
 		cnt = 0;
 	}
 	if (cnt < 56)
 		memset(&c->buf.b[cnt], 0, 56 - cnt);
 	c->buf.l[7] = c->len;
-	sha1_core(c->hash, c->buf.b, 1);
+	ppc_sha1_core(c->hash, c->buf.b, 1);
 	memcpy(hash, c->hash, 20);
 	return 0;
 }
diff --git a/ppc/sha1.h b/ppc/sha1.h
index c3c51aa4d4..c405f734c2 100644
--- a/ppc/sha1.h
+++ b/ppc/sha1.h
@@ -5,7 +5,7 @@
  */
 #include <stdint.h>
 
-typedef struct sha_context {
+typedef struct {
 	uint32_t hash[5];
 	uint32_t cnt;
 	uint64_t len;
@@ -13,8 +13,13 @@ typedef struct sha_context {
 		unsigned char b[64];
 		uint64_t l[8];
 	} buf;
-} SHA_CTX;
+} ppc_SHA_CTX;
 
-int SHA1_Init(SHA_CTX *c);
-int SHA1_Update(SHA_CTX *c, const void *p, unsigned long n);
-int SHA1_Final(unsigned char *hash, SHA_CTX *c);
+int ppc_SHA1_Init(ppc_SHA_CTX *c);
+int ppc_SHA1_Update(ppc_SHA_CTX *c, const void *p, unsigned long n);
+int ppc_SHA1_Final(unsigned char *hash, ppc_SHA_CTX *c);
+
+#define git_SHA_CTX	ppc_SHA_CTX
+#define git_SHA1_Init	ppc_SHA1_Init
+#define git_SHA1_Update	ppc_SHA1_Update
+#define git_SHA1_Final	ppc_SHA1_Final
diff --git a/ppc/sha1ppc.S b/ppc/sha1ppc.S
index f132696ee7..1711eef6e7 100644
--- a/ppc/sha1ppc.S
+++ b/ppc/sha1ppc.S
@@ -162,8 +162,8 @@ add RE(t),RE(t),%r0;  rotlwi RB(t),RB(t),30
 	STEPUP4(fn, (t)+12, (s)+12,);	\
 	STEPUP4(fn, (t)+16, (s)+16, loadk)
 
-	.globl	sha1_core
-sha1_core:
+	.globl	ppc_sha1_core
+ppc_sha1_core:
 	stwu	%r1,-80(%r1)
 	stmw	%r13,4(%r1)
 
diff --git a/read-cache.c b/read-cache.c
index 5b1b3ad03b..d7900f33ea 100644
--- a/read-cache.c
+++ b/read-cache.c
@@ -13,6 +13,7 @@
 #include "diff.h"
 #include "diffcore.h"
 #include "revision.h"
+#include "blob.h"
 
 /* Index extensions.
  *
@@ -511,6 +512,14 @@ static struct cache_entry *create_alias_ce(struct cache_entry *ce, struct cache_
 	return new;
 }
 
+static void record_intent_to_add(struct cache_entry *ce)
+{
+	unsigned char sha1[20];
+	if (write_sha1_file("", 0, blob_type, sha1))
+		die("cannot create an empty blob in the object database");
+	hashcpy(ce->sha1, sha1);
+}
+
 int add_to_index(struct index_state *istate, const char *path, struct stat *st, int flags)
 {
 	int size, namelen, was_same;
@@ -519,6 +528,9 @@ int add_to_index(struct index_state *istate, const char *path, struct stat *st,
 	unsigned ce_option = CE_MATCH_IGNORE_VALID|CE_MATCH_RACY_IS_DIRTY;
 	int verbose = flags & (ADD_CACHE_VERBOSE | ADD_CACHE_PRETEND);
 	int pretend = flags & ADD_CACHE_PRETEND;
+	int intent_only = flags & ADD_CACHE_INTENT;
+	int add_option = (ADD_CACHE_OK_TO_ADD|ADD_CACHE_OK_TO_REPLACE|
+			  (intent_only ? ADD_CACHE_NEW_ONLY : 0));
 
 	if (!S_ISREG(st_mode) && !S_ISLNK(st_mode) && !S_ISDIR(st_mode))
 		return error("%s: can only add regular files, symbolic links or git-directories", path);
@@ -532,7 +544,8 @@ int add_to_index(struct index_state *istate, const char *path, struct stat *st,
 	ce = xcalloc(1, size);
 	memcpy(ce->name, path, namelen);
 	ce->ce_flags = namelen;
-	fill_stat_cache_info(ce, st);
+	if (!intent_only)
+		fill_stat_cache_info(ce, st);
 
 	if (trust_executable_bit && has_symlinks)
 		ce->ce_mode = create_ce_mode(st_mode);
@@ -555,8 +568,12 @@ int add_to_index(struct index_state *istate, const char *path, struct stat *st,
 		alias->ce_flags |= CE_ADDED;
 		return 0;
 	}
-	if (index_path(ce->sha1, path, st, 1))
-		return error("unable to index file %s", path);
+	if (!intent_only) {
+		if (index_path(ce->sha1, path, st, 1))
+			return error("unable to index file %s", path);
+	} else
+		record_intent_to_add(ce);
+
 	if (ignore_case && alias && different_name(ce, alias))
 		ce = create_alias_ce(ce, alias);
 	ce->ce_flags |= CE_ADDED;
@@ -569,7 +586,7 @@ int add_to_index(struct index_state *istate, const char *path, struct stat *st,
 
 	if (pretend)
 		;
-	else if (add_index_entry(istate, ce, ADD_CACHE_OK_TO_ADD|ADD_CACHE_OK_TO_REPLACE))
+	else if (add_index_entry(istate, ce, add_option))
 		return error("unable to add %s to index",path);
 	if (verbose && !was_same)
 		printf("add '%s'\n", path);
@@ -848,13 +865,15 @@ static int add_index_entry_with_check(struct index_state *istate, struct cache_e
 	int ok_to_add = option & ADD_CACHE_OK_TO_ADD;
 	int ok_to_replace = option & ADD_CACHE_OK_TO_REPLACE;
 	int skip_df_check = option & ADD_CACHE_SKIP_DFCHECK;
+	int new_only = option & ADD_CACHE_NEW_ONLY;
 
 	cache_tree_invalidate_path(istate->cache_tree, ce->name);
 	pos = index_name_pos(istate, ce->name, ce->ce_flags);
 
 	/* existing match? Just replace it. */
 	if (pos >= 0) {
-		replace_index_entry(istate, pos, ce);
+		if (!new_only)
+			replace_index_entry(istate, pos, ce);
 		return 0;
 	}
 	pos = -pos-1;
@@ -1072,16 +1091,16 @@ struct cache_entry *refresh_cache_entry(struct cache_entry *ce, int really)
 
 static int verify_hdr(struct cache_header *hdr, unsigned long size)
 {
-	SHA_CTX c;
+	git_SHA_CTX c;
 	unsigned char sha1[20];
 
 	if (hdr->hdr_signature != htonl(CACHE_SIGNATURE))
 		return error("bad signature");
 	if (hdr->hdr_version != htonl(2))
 		return error("bad index version");
-	SHA1_Init(&c);
-	SHA1_Update(&c, hdr, size - 20);
-	SHA1_Final(sha1, &c);
+	git_SHA1_Init(&c);
+	git_SHA1_Update(&c, hdr, size - 20);
+	git_SHA1_Final(sha1, &c);
 	if (hashcmp(sha1, (unsigned char *)hdr + size - 20))
 		return error("bad index file sha1 signature");
 	return 0;
@@ -1278,11 +1297,11 @@ int unmerged_index(const struct index_state *istate)
 static unsigned char write_buffer[WRITE_BUFFER_SIZE];
 static unsigned long write_buffer_len;
 
-static int ce_write_flush(SHA_CTX *context, int fd)
+static int ce_write_flush(git_SHA_CTX *context, int fd)
 {
 	unsigned int buffered = write_buffer_len;
 	if (buffered) {
-		SHA1_Update(context, write_buffer, buffered);
+		git_SHA1_Update(context, write_buffer, buffered);
 		if (write_in_full(fd, write_buffer, buffered) != buffered)
 			return -1;
 		write_buffer_len = 0;
@@ -1290,7 +1309,7 @@ static int ce_write_flush(SHA_CTX *context, int fd)
 	return 0;
 }
 
-static int ce_write(SHA_CTX *context, int fd, void *data, unsigned int len)
+static int ce_write(git_SHA_CTX *context, int fd, void *data, unsigned int len)
 {
 	while (len) {
 		unsigned int buffered = write_buffer_len;
@@ -1312,7 +1331,7 @@ static int ce_write(SHA_CTX *context, int fd, void *data, unsigned int len)
 	return 0;
 }
 
-static int write_index_ext_header(SHA_CTX *context, int fd,
+static int write_index_ext_header(git_SHA_CTX *context, int fd,
 				  unsigned int ext, unsigned int sz)
 {
 	ext = htonl(ext);
@@ -1321,13 +1340,13 @@ static int write_index_ext_header(SHA_CTX *context, int fd,
 		(ce_write(context, fd, &sz, 4) < 0)) ? -1 : 0;
 }
 
-static int ce_flush(SHA_CTX *context, int fd)
+static int ce_flush(git_SHA_CTX *context, int fd)
 {
 	unsigned int left = write_buffer_len;
 
 	if (left) {
 		write_buffer_len = 0;
-		SHA1_Update(context, write_buffer, left);
+		git_SHA1_Update(context, write_buffer, left);
 	}
 
 	/* Flush first if not enough space for SHA1 signature */
@@ -1338,7 +1357,7 @@ static int ce_flush(SHA_CTX *context, int fd)
 	}
 
 	/* Append the SHA1 signature at the end */
-	SHA1_Final(write_buffer + left, context);
+	git_SHA1_Final(write_buffer + left, context);
 	left += 20;
 	return (write_in_full(fd, write_buffer, left) != left) ? -1 : 0;
 }
@@ -1392,7 +1411,7 @@ static void ce_smudge_racily_clean_entry(struct cache_entry *ce)
 	}
 }
 
-static int ce_write_entry(SHA_CTX *c, int fd, struct cache_entry *ce)
+static int ce_write_entry(git_SHA_CTX *c, int fd, struct cache_entry *ce)
 {
 	int size = ondisk_ce_size(ce);
 	struct ondisk_cache_entry *ondisk = xcalloc(1, size);
@@ -1416,7 +1435,7 @@ static int ce_write_entry(SHA_CTX *c, int fd, struct cache_entry *ce)
 
 int write_index(const struct index_state *istate, int newfd)
 {
-	SHA_CTX c;
+	git_SHA_CTX c;
 	struct cache_header hdr;
 	int i, err, removed;
 	struct cache_entry **cache = istate->cache;
@@ -1430,7 +1449,7 @@ int write_index(const struct index_state *istate, int newfd)
 	hdr.hdr_version = htonl(2);
 	hdr.hdr_entries = htonl(entries - removed);
 
-	SHA1_Init(&c);
+	git_SHA1_Init(&c);
 	if (ce_write(&c, newfd, &hdr, sizeof(hdr)) < 0)
 		return -1;
 
diff --git a/remote.c b/remote.c
index 3f3c789653..a2d7ab146e 100644
--- a/remote.c
+++ b/remote.c
@@ -455,7 +455,7 @@ static int verify_refname(char *name, int is_glob)
  *          and dst pointers are always freeable pointers as well
  *          as the refspec pointer itself.
  */
-void free_refspecs(struct refspec *refspec, int nr_refspec)
+static void free_refspecs(struct refspec *refspec, int nr_refspec)
 {
 	int i;
 
@@ -613,7 +613,7 @@ struct refspec *parse_fetch_refspec(int nr_refspec, const char **refspec)
 	return parse_refspec_internal(nr_refspec, refspec, 1, 0);
 }
 
-struct refspec *parse_push_refspec(int nr_refspec, const char **refspec)
+static struct refspec *parse_push_refspec(int nr_refspec, const char **refspec)
 {
 	return parse_refspec_internal(nr_refspec, refspec, 0, 0);
 }
@@ -751,8 +751,7 @@ int remote_find_tracking(struct remote *remote, struct refspec *refspec)
 
 struct ref *alloc_ref(unsigned namelen)
 {
-	struct ref *ret = xmalloc(sizeof(struct ref) + namelen);
-	memset(ret, 0, sizeof(struct ref) + namelen);
+	struct ref *ret = xcalloc(1, sizeof(struct ref) + namelen);
 	return ret;
 }
 
@@ -783,7 +782,7 @@ struct ref *copy_ref_list(const struct ref *ref)
 	return ret;
 }
 
-void free_ref(struct ref *ref)
+static void free_ref(struct ref *ref)
 {
 	if (!ref)
 		return;
diff --git a/remote.h b/remote.h
index 2601f6e76d..c6163ff5b1 100644
--- a/remote.h
+++ b/remote.h
@@ -77,8 +77,6 @@ void ref_remove_duplicates(struct ref *ref_map);
 
 int valid_fetch_refspec(const char *refspec);
 struct refspec *parse_fetch_refspec(int nr_refspec, const char **refspec);
-struct refspec *parse_push_refspec(int nr_refspec, const char **refspec);
-void free_refspecs(struct refspec *refspec, int nr_refspec);
 
 int match_refs(struct ref *src, struct ref *dst, struct ref ***dst_tail,
 	       int nr_refspec, const char **refspec, int all);
diff --git a/rerere.c b/rerere.c
index 323e493daf..121f911414 100644
--- a/rerere.c
+++ b/rerere.c
@@ -73,9 +73,12 @@ static int write_rr(struct string_list *rr, int out_fd)
 static int handle_file(const char *path,
 	 unsigned char *sha1, const char *output)
 {
-	SHA_CTX ctx;
+	git_SHA_CTX ctx;
 	char buf[1024];
-	int hunk = 0, hunk_no = 0;
+	int hunk_no = 0;
+	enum {
+		RR_CONTEXT = 0, RR_SIDE_1, RR_SIDE_2, RR_ORIGINAL,
+	} hunk = RR_CONTEXT;
 	struct strbuf one, two;
 	FILE *f = fopen(path, "r");
 	FILE *out = NULL;
@@ -92,26 +95,30 @@ static int handle_file(const char *path,
 	}
 
 	if (sha1)
-		SHA1_Init(&ctx);
+		git_SHA1_Init(&ctx);
 
 	strbuf_init(&one, 0);
 	strbuf_init(&two,  0);
 	while (fgets(buf, sizeof(buf), f)) {
 		if (!prefixcmp(buf, "<<<<<<< ")) {
-			if (hunk)
+			if (hunk != RR_CONTEXT)
 				goto bad;
-			hunk = 1;
+			hunk = RR_SIDE_1;
+		} else if (!prefixcmp(buf, "|||||||") && isspace(buf[7])) {
+			if (hunk != RR_SIDE_1)
+				goto bad;
+			hunk = RR_ORIGINAL;
 		} else if (!prefixcmp(buf, "=======") && isspace(buf[7])) {
-			if (hunk != 1)
+			if (hunk != RR_SIDE_1 && hunk != RR_ORIGINAL)
 				goto bad;
-			hunk = 2;
+			hunk = RR_SIDE_2;
 		} else if (!prefixcmp(buf, ">>>>>>> ")) {
-			if (hunk != 2)
+			if (hunk != RR_SIDE_2)
 				goto bad;
 			if (strbuf_cmp(&one, &two) > 0)
 				strbuf_swap(&one, &two);
 			hunk_no++;
-			hunk = 0;
+			hunk = RR_CONTEXT;
 			if (out) {
 				fputs("<<<<<<<\n", out);
 				fwrite(one.buf, one.len, 1, out);
@@ -120,16 +127,18 @@ static int handle_file(const char *path,
 				fputs(">>>>>>>\n", out);
 			}
 			if (sha1) {
-				SHA1_Update(&ctx, one.buf ? one.buf : "",
+				git_SHA1_Update(&ctx, one.buf ? one.buf : "",
 					    one.len + 1);
-				SHA1_Update(&ctx, two.buf ? two.buf : "",
+				git_SHA1_Update(&ctx, two.buf ? two.buf : "",
 					    two.len + 1);
 			}
 			strbuf_reset(&one);
 			strbuf_reset(&two);
-		} else if (hunk == 1)
+		} else if (hunk == RR_SIDE_1)
 			strbuf_addstr(&one, buf);
-		else if (hunk == 2)
+		else if (hunk == RR_ORIGINAL)
+			; /* discard */
+		else if (hunk == RR_SIDE_2)
 			strbuf_addstr(&two, buf);
 		else if (out)
 			fputs(buf, out);
@@ -145,8 +154,8 @@ static int handle_file(const char *path,
 	if (out)
 		fclose(out);
 	if (sha1)
-		SHA1_Final(sha1, &ctx);
-	if (hunk) {
+		git_SHA1_Final(sha1, &ctx);
+	if (hunk != RR_CONTEXT) {
 		if (output)
 			unlink(output);
 		return error("Could not parse conflict hunks in %s", path);
@@ -319,7 +328,6 @@ static int git_rerere_config(const char *var, const char *value, void *cb)
 
 static int is_rerere_enabled(void)
 {
-	struct stat st;
 	const char *rr_cache;
 	int rr_cache_exists;
 
@@ -327,7 +335,7 @@ static int is_rerere_enabled(void)
 		return 0;
 
 	rr_cache = git_path("rr-cache");
-	rr_cache_exists = !stat(rr_cache, &st) && S_ISDIR(st.st_mode);
+	rr_cache_exists = is_directory(rr_cache);
 	if (rerere_enabled < 0)
 		return rr_cache_exists;
 
diff --git a/run-command.c b/run-command.c
index caab374577..c90cdc50e3 100644
--- a/run-command.c
+++ b/run-command.c
@@ -273,14 +273,6 @@ int run_command_v_opt(const char **argv, int opt)
 	return run_command(&cmd);
 }
 
-int run_command_v_opt_cd(const char **argv, int opt, const char *dir)
-{
-	struct child_process cmd;
-	prepare_run_command_v_opt(&cmd, argv, opt);
-	cmd.dir = dir;
-	return run_command(&cmd);
-}
-
 int run_command_v_opt_cd_env(const char **argv, int opt, const char *dir, const char *const *env)
 {
 	struct child_process cmd;
diff --git a/run-command.h b/run-command.h
index 4f2b7d7d40..a8b0c209e9 100644
--- a/run-command.h
+++ b/run-command.h
@@ -53,7 +53,6 @@ int run_command(struct child_process *);
 #define RUN_GIT_CMD	     2	/*If this is to be git sub-command */
 #define RUN_COMMAND_STDOUT_TO_STDERR 4
 int run_command_v_opt(const char **argv, int opt);
-int run_command_v_opt_cd(const char **argv, int opt, const char *dir);
 
 /*
  * env (the environment) is to be formatted like environ: "VAR=VALUE".
diff --git a/setup.c b/setup.c
index 2e3248a0c4..78a8041ff0 100644
--- a/setup.c
+++ b/setup.c
@@ -110,9 +110,7 @@ const char *prefix_path(const char *prefix, int len, const char *path)
 		if (strncmp(sanitized, work_tree, len) ||
 		    (sanitized[len] != '\0' && sanitized[len] != '/')) {
 		error_out:
-			error("'%s' is outside repository", orig);
-			free(sanitized);
-			return NULL;
+			die("'%s' is outside repository", orig);
 		}
 		if (sanitized[len] == '/')
 			len++;
@@ -216,10 +214,7 @@ const char **get_pathspec(const char *prefix, const char **pathspec)
 	prefixlen = prefix ? strlen(prefix) : 0;
 	while (*src) {
 		const char *p = prefix_path(prefix, prefixlen, *src);
-		if (p)
-			*(dst++) = p;
-		else
-			exit(128); /* error message already given */
+		*(dst++) = p;
 		src++;
 	}
 	*dst = NULL;
diff --git a/sha1_file.c b/sha1_file.c
index aec81bbae7..ea6bd996b2 100644
--- a/sha1_file.c
+++ b/sha1_file.c
@@ -99,7 +99,11 @@ int safe_create_leading_directories(char *path)
 		pos = strchr(pos, '/');
 		if (!pos)
 			break;
-		*pos = 0;
+		while (*++pos == '/')
+			;
+		if (!*pos)
+			break;
+		*--pos = '\0';
 		if (!stat(path, &st)) {
 			/* path exists */
 			if (!S_ISDIR(st.st_mode)) {
@@ -250,7 +254,6 @@ static void read_info_alternates(const char * alternates, int depth);
  */
 static int link_alt_odb_entry(const char * entry, int len, const char * relative_base, int depth)
 {
-	struct stat st;
 	const char *objdir = get_object_directory();
 	struct alternate_object_database *ent;
 	struct alternate_object_database *alt;
@@ -281,7 +284,7 @@ static int link_alt_odb_entry(const char * entry, int len, const char * relative
 	ent->base[pfxlen] = ent->base[entlen-1] = 0;
 
 	/* Detect cases where alternate disappeared */
-	if (stat(ent->base, &st) || !S_ISDIR(st.st_mode)) {
+	if (!is_directory(ent->base)) {
 		error("object directory %s does not exist; "
 		      "check .git/objects/info/alternates.",
 		      ent->base);
@@ -394,6 +397,16 @@ void add_to_alternates_file(const char *reference)
 		link_alt_odb_entries(alt, alt + strlen(alt), '\n', NULL, 0);
 }
 
+void foreach_alt_odb(alt_odb_fn fn, void *cb)
+{
+	struct alternate_object_database *ent;
+
+	prepare_alt_odb();
+	for (ent = alt_odb_list; ent; ent = ent->next)
+		if (fn(ent, cb))
+			return;
+}
+
 void prepare_alt_odb(void)
 {
 	const char *alt;
@@ -1558,11 +1571,9 @@ static void *cache_or_unpack_entry(struct packed_git *p, off_t base_offset,
 	struct delta_base_cache_entry *ent = delta_base_cache + hash;
 
 	ret = ent->data;
-	if (ret && ent->p == p && ent->base_offset == base_offset)
-		goto found_cache_entry;
-	return unpack_entry(p, base_offset, type, base_size);
+	if (!ret || ent->p != p || ent->base_offset != base_offset)
+		return unpack_entry(p, base_offset, type, base_size);
 
-found_cache_entry:
 	if (!keep_cache) {
 		ent->data = NULL;
 		ent->lru.next->prev = ent->lru.prev;
@@ -2119,16 +2130,16 @@ static void write_sha1_file_prepare(const void *buf, unsigned long len,
                                     const char *type, unsigned char *sha1,
                                     char *hdr, int *hdrlen)
 {
-	SHA_CTX c;
+	git_SHA_CTX c;
 
 	/* Generate the header */
 	*hdrlen = sprintf(hdr, "%s %lu", type, len)+1;
 
 	/* Sha1.. */
-	SHA1_Init(&c);
-	SHA1_Update(&c, hdr, *hdrlen);
-	SHA1_Update(&c, buf, len);
-	SHA1_Final(sha1, &c);
+	git_SHA1_Init(&c);
+	git_SHA1_Update(&c, hdr, *hdrlen);
+	git_SHA1_Update(&c, buf, len);
+	git_SHA1_Final(sha1, &c);
 }
 
 /*
diff --git a/t/t0001-init.sh b/t/t0001-init.sh
index 35bcfaa1ad..41a36bb1a3 100755
--- a/t/t0001-init.sh
+++ b/t/t0001-init.sh
@@ -167,4 +167,36 @@ test_expect_success 'init with --template (blank)' '
 	! test -f template-blank/.git/info/exclude
 '
 
+test_expect_success 'init --bare/--shared overrides system/global config' '
+	(
+		HOME="`pwd`" &&
+		export HOME &&
+		test_config="$HOME"/.gitconfig &&
+		unset GIT_CONFIG_NOGLOBAL &&
+		git config -f "$test_config" core.bare false &&
+		git config -f "$test_config" core.sharedRepository 0640 &&
+		mkdir init-bare-shared-override &&
+		cd init-bare-shared-override &&
+		git init --bare --shared=0666
+	) &&
+	check_config init-bare-shared-override true unset &&
+	test x0666 = \
+	x`git config -f init-bare-shared-override/config core.sharedRepository`
+'
+
+test_expect_success 'init honors global core.sharedRepository' '
+	(
+		HOME="`pwd`" &&
+		export HOME &&
+		test_config="$HOME"/.gitconfig &&
+		unset GIT_CONFIG_NOGLOBAL &&
+		git config -f "$test_config" core.sharedRepository 0666 &&
+		mkdir shared-honor-global &&
+		cd shared-honor-global &&
+		git init
+	) &&
+	test x0666 = \
+	x`git config -f shared-honor-global/.git/config core.sharedRepository`
+'
+
 test_done
diff --git a/t/t0002-gitfile.sh b/t/t0002-gitfile.sh
index 4db4ac44c9..cb144258cc 100755
--- a/t/t0002-gitfile.sh
+++ b/t/t0002-gitfile.sh
@@ -32,7 +32,7 @@ test_expect_success 'bad setup: invalid .git file format' '
 		echo "git rev-parse accepted an invalid .git file"
 		false
 	fi &&
-	if ! grep -qe "Invalid gitfile format" .err
+	if ! grep "Invalid gitfile format" .err
 	then
 		echo "git rev-parse returned wrong error"
 		false
@@ -46,7 +46,7 @@ test_expect_success 'bad setup: invalid .git file path' '
 		echo "git rev-parse accepted an invalid .git file path"
 		false
 	fi &&
-	if ! grep -qe "Not a git repository" .err
+	if ! grep "Not a git repository" .err
 	then
 		echo "git rev-parse returned wrong error"
 		false
diff --git a/t/t0024-crlf-archive.sh b/t/t0024-crlf-archive.sh
old mode 100644
new mode 100755
diff --git a/t/t1300-repo-config.sh b/t/t1300-repo-config.sh
index 036f16a9af..62033ad5f8 100755
--- a/t/t1300-repo-config.sh
+++ b/t/t1300-repo-config.sh
@@ -742,4 +742,14 @@ test_expect_success 'symlinked configuration' '
 
 '
 
+test_expect_success 'check split_cmdline return' "
+	git config alias.split-cmdline-fix 'echo \"' &&
+	test_must_fail git split-cmdline-fix &&
+	echo foo > foo &&
+	git add foo &&
+	git commit -m 'initial commit' &&
+	git config branch.master.mergeoptions 'echo \"' &&
+	test_must_fail git merge master
+	"
+
 test_done
diff --git a/t/t1501-worktree.sh b/t/t1501-worktree.sh
index c039ee3fd8..f6a6f839a1 100755
--- a/t/t1501-worktree.sh
+++ b/t/t1501-worktree.sh
@@ -171,7 +171,7 @@ test_expect_success 'git diff' '
 
 test_expect_success 'git grep' '
 	(cd repo.git/work/sub &&
-	GIT_DIR=../.. GIT_WORK_TREE=.. git grep -l changed | grep -q dir/tracked)
+	GIT_DIR=../.. GIT_WORK_TREE=.. git grep -l changed | grep dir/tracked)
 '
 
 test_done
diff --git a/t/t2203-add-intent.sh b/t/t2203-add-intent.sh
new file mode 100755
index 0000000000..d4de35ea06
--- /dev/null
+++ b/t/t2203-add-intent.sh
@@ -0,0 +1,36 @@
+#!/bin/sh
+
+test_description='Intent to add'
+
+. ./test-lib.sh
+
+test_expect_success 'intent to add' '
+	echo hello >file &&
+	echo hello >elif &&
+	git add -N file &&
+	git add elif
+'
+
+test_expect_success 'check result of "add -N"' '
+	git ls-files -s file >actual &&
+	empty=$(git hash-object --stdin </dev/null) &&
+	echo "100644 $empty 0	file" >expect &&
+	test_cmp expect actual
+'
+
+test_expect_success 'intent to add is just an ordinary empty blob' '
+	git add -u &&
+	git ls-files -s file >actual &&
+	git ls-files -s elif | sed -e "s/elif/file/" >expect &&
+	test_cmp expect actual
+'
+
+test_expect_success 'intent to add does not clobber existing paths' '
+	git add -N file elif &&
+	empty=$(git hash-object --stdin </dev/null) &&
+	git ls-files -s >actual &&
+	! grep "$empty" actual
+'
+
+test_done
+
diff --git a/t/t3030-merge-recursive.sh b/t/t3030-merge-recursive.sh
index de0cdb1cf4..0de613dc53 100755
--- a/t/t3030-merge-recursive.sh
+++ b/t/t3030-merge-recursive.sh
@@ -535,4 +535,15 @@ test_expect_success 'reset and bind merge' '
 
 '
 
+test_expect_success 'merge removes empty directories' '
+
+	git reset --hard master &&
+	git checkout -b rm &&
+	git rm d/e &&
+	git commit -mremoved-d/e &&
+	git checkout master &&
+	git merge -s recursive rm &&
+	test_must_fail test -d d
+'
+
 test_done
diff --git a/t/t3409-rebase-hook.sh b/t/t3409-rebase-hook.sh
new file mode 100755
index 0000000000..bc93dda8fd
--- /dev/null
+++ b/t/t3409-rebase-hook.sh
@@ -0,0 +1,126 @@
+#!/bin/sh
+
+test_description='git rebase with its hook(s)'
+
+. ./test-lib.sh
+
+test_expect_success setup '
+	echo hello >file &&
+	git add file &&
+	test_tick &&
+	git commit -m initial &&
+	echo goodbye >file &&
+	git add file &&
+	test_tick &&
+	git commit -m second &&
+	git checkout -b side HEAD^ &&
+	echo world >git &&
+	git add git &&
+	test_tick &&
+	git commit -m side &&
+	git checkout master &&
+	git log --pretty=oneline --abbrev-commit --graph --all &&
+	git branch test side
+'
+
+test_expect_success 'rebase' '
+	git checkout test &&
+	git reset --hard side &&
+	git rebase master &&
+	test "z$(cat git)" = zworld
+'
+
+test_expect_success 'rebase -i' '
+	git checkout test &&
+	git reset --hard side &&
+	EDITOR=true git rebase -i master &&
+	test "z$(cat git)" = zworld
+'
+
+test_expect_success 'setup pre-rebase hook' '
+	mkdir -p .git/hooks &&
+	cat >.git/hooks/pre-rebase <<EOF &&
+#!$SHELL_PATH
+echo "\$1,\$2" >.git/PRE-REBASE-INPUT
+EOF
+	chmod +x .git/hooks/pre-rebase
+'
+
+test_expect_success 'pre-rebase hook gets correct input (1)' '
+	git checkout test &&
+	git reset --hard side &&
+	git rebase master &&
+	test "z$(cat git)" = zworld &&
+	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,
+
+'
+
+test_expect_success 'pre-rebase hook gets correct input (2)' '
+	git checkout test &&
+	git reset --hard side &&
+	git rebase master test &&
+	test "z$(cat git)" = zworld &&
+	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,test
+'
+
+test_expect_success 'pre-rebase hook gets correct input (3)' '
+	git checkout test &&
+	git reset --hard side &&
+	git checkout master &&
+	git rebase master test &&
+	test "z$(cat git)" = zworld &&
+	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,test
+'
+
+test_expect_success 'pre-rebase hook gets correct input (4)' '
+	git checkout test &&
+	git reset --hard side &&
+	EDITOR=true git rebase -i master &&
+	test "z$(cat git)" = zworld &&
+	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,
+
+'
+
+test_expect_success 'pre-rebase hook gets correct input (5)' '
+	git checkout test &&
+	git reset --hard side &&
+	EDITOR=true git rebase -i master test &&
+	test "z$(cat git)" = zworld &&
+	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,test
+'
+
+test_expect_success 'pre-rebase hook gets correct input (6)' '
+	git checkout test &&
+	git reset --hard side &&
+	git checkout master &&
+	EDITOR=true git rebase -i master test &&
+	test "z$(cat git)" = zworld &&
+	test "z$(cat .git/PRE-REBASE-INPUT)" = zmaster,test
+'
+
+test_expect_success 'setup pre-rebase hook that fails' '
+	mkdir -p .git/hooks &&
+	cat >.git/hooks/pre-rebase <<EOF &&
+#!$SHELL_PATH
+false
+EOF
+	chmod +x .git/hooks/pre-rebase
+'
+
+test_expect_success 'pre-rebase hook stops rebase (1)' '
+	git checkout test &&
+	git reset --hard side &&
+	test_must_fail git rebase master &&
+	test "z$(git symbolic-ref HEAD)" = zrefs/heads/test &&
+	test 0 = $(git rev-list HEAD...side | wc -l)
+'
+
+test_expect_success 'pre-rebase hook stops rebase (2)' '
+	git checkout test &&
+	git reset --hard side &&
+	EDITOR=true test_must_fail git rebase -i master &&
+	test "z$(git symbolic-ref HEAD)" = zrefs/heads/test &&
+	test 0 = $(git rev-list HEAD...side | wc -l)
+'
+
+test_done
diff --git a/t/t3600-rm.sh b/t/t3600-rm.sh
index 558c80edbf..66aca99fd3 100755
--- a/t/t3600-rm.sh
+++ b/t/t3600-rm.sh
@@ -219,14 +219,23 @@ test_expect_success 'Remove nonexistent file returns nonzero exit status' '
 
 test_expect_success 'Call "rm" from outside the work tree' '
 	mkdir repo &&
-	cd repo &&
-	git init &&
-	echo something > somefile &&
-	git add somefile &&
-	git commit -m "add a file" &&
-	(cd .. &&
-	 git --git-dir=repo/.git --work-tree=repo rm somefile) &&
-	test_must_fail git ls-files --error-unmatch somefile
+	(cd repo &&
+	 git init &&
+	 echo something > somefile &&
+	 git add somefile &&
+	 git commit -m "add a file" &&
+	 (cd .. &&
+	  git --git-dir=repo/.git --work-tree=repo rm somefile) &&
+	test_must_fail git ls-files --error-unmatch somefile)
+'
+
+test_expect_success 'refresh index before checking if it is up-to-date' '
+
+	git reset --hard &&
+	test-chmtime -86400 frotz/nitfol &&
+	git rm frotz/nitfol &&
+	test ! -f frotz/nitfol
+
 '
 
 test_done
diff --git a/t/t3700-add.sh b/t/t3700-add.sh
index 93b9ac08ab..ba10c1807d 100755
--- a/t/t3700-add.sh
+++ b/t/t3700-add.sh
@@ -235,7 +235,7 @@ test_expect_success 'git add '\''fo\[ou\]bar'\'' ignores foobar' '
 	git reset --hard &&
 	touch fo\[ou\]bar foobar &&
 	git add '\''fo\[ou\]bar'\'' &&
-	git ls-files fo\[ou\]bar | grep -F fo\[ou\]bar &&
+	git ls-files fo\[ou\]bar | fgrep fo\[ou\]bar &&
 	! ( git ls-files foobar | grep foobar )
 '
 
diff --git a/t/t4012-diff-binary.sh b/t/t4012-diff-binary.sh
index b8ec6e90af..421f4bba3f 100755
--- a/t/t4012-diff-binary.sh
+++ b/t/t4012-diff-binary.sh
@@ -77,4 +77,25 @@ test_expect_success 'apply binary patch' \
 	 tree1=`git write-tree` &&
 	 test "$tree1" = "$tree0"'
 
+q_to_nul() {
+	perl -pe 'y/Q/\000/'
+}
+
+nul_to_q() {
+	perl -pe 'y/\000/Q/'
+}
+
+test_expect_success 'diff --no-index with binary creation' '
+	echo Q | q_to_nul >binary &&
+	(:# hide error code from diff, which just indicates differences
+	 git diff --binary --no-index /dev/null binary >current ||
+	 true
+	) &&
+	rm binary &&
+	git apply --binary <current &&
+	echo Q >expected &&
+	nul_to_q <binary >actual &&
+	test_cmp expected actual
+'
+
 test_done
diff --git a/t/t4018-diff-funcname.sh b/t/t4018-diff-funcname.sh
index 18bcd9713d..520e095c59 100755
--- a/t/t4018-diff-funcname.sh
+++ b/t/t4018-diff-funcname.sh
@@ -32,7 +32,18 @@ EOF
 
 sed 's/beer\\/beer,\\/' < Beer.java > Beer-correct.java
 
+builtin_patterns="bibtex html java pascal php python ruby tex"
+for p in $builtin_patterns
+do
+	test_expect_success "builtin $p pattern compiles" '
+		echo "*.java diff=$p" > .gitattributes &&
+		! ( git diff --no-index Beer.java Beer-correct.java 2>&1 |
+			grep "fatal" > /dev/null )
+	'
+done
+
 test_expect_success 'default behaviour' '
+	rm -f .gitattributes &&
 	git diff --no-index Beer.java Beer-correct.java |
 	grep "^@@.*@@ public class Beer"
 '
@@ -58,7 +69,7 @@ test_expect_success 'last regexp must not be negated' '
 '
 
 test_expect_success 'alternation in pattern' '
-	git config diff.java.funcname "^[ 	]*\\(\\(public\\|static\\).*\\)$"
+	git config diff.java.xfuncname "^[ 	]*((public|static).*)$" &&
 	git diff --no-index Beer.java Beer-correct.java |
 	grep "^@@.*@@ public static void main("
 '
diff --git a/t/t4150-am.sh b/t/t4150-am.sh
index 01fb31ff06..fb1ebb9bfe 100755
--- a/t/t4150-am.sh
+++ b/t/t4150-am.sh
@@ -165,7 +165,7 @@ test_expect_success 'am --keep really keeps the subject' '
 	git am --keep patch4 &&
 	! test -d .git/rebase-apply &&
 	git cat-file commit HEAD |
-		grep -q -F "Re: Re: Re: [PATCH 1/5 v2] third"
+		fgrep "Re: Re: Re: [PATCH 1/5 v2] third"
 '
 
 test_expect_success 'am -3 falls back to 3-way merge' '
diff --git a/t/t6023-merge-file.sh b/t/t6023-merge-file.sh
index 5e18d68c97..f8942bc890 100755
--- a/t/t6023-merge-file.sh
+++ b/t/t6023-merge-file.sh
@@ -161,4 +161,48 @@ test_expect_success 'ZEALOUS_ALNUM' '
 
 '
 
+cat >expect <<\EOF
+Dominus regit me,
+<<<<<<< new8.txt
+et nihil mihi deerit;
+
+
+
+
+In loco pascuae ibi me collocavit;
+super aquam refectionis educavit me.
+|||||||
+et nihil mihi deerit.
+In loco pascuae ibi me collocavit,
+super aquam refectionis educavit me;
+=======
+et nihil mihi deerit,
+
+
+
+
+In loco pascuae ibi me collocavit --
+super aquam refectionis educavit me,
+>>>>>>> new9.txt
+animam meam convertit,
+deduxit me super semitas jusitiae,
+propter nomen suum.
+Nam et si ambulavero in medio umbrae mortis,
+non timebo mala, quoniam TU mecum es:
+virga tua et baculus tuus ipsa me consolata sunt.
+EOF
+
+test_expect_success '"diff3 -m" style output (1)' '
+	test_must_fail git merge-file -p --diff3 \
+		new8.txt new5.txt new9.txt >actual &&
+	test_cmp expect actual
+'
+
+test_expect_success '"diff3 -m" style output (2)' '
+	git config merge.conflictstyle diff3 &&
+	test_must_fail git merge-file -p \
+		new8.txt new5.txt new9.txt >actual &&
+	test_cmp expect actual
+'
+
 test_done
diff --git a/t/t6026-merge-attr.sh b/t/t6026-merge-attr.sh
index 4b423e937d..1ba0a25223 100755
--- a/t/t6026-merge-attr.sh
+++ b/t/t6026-merge-attr.sh
@@ -142,4 +142,26 @@ test_expect_success 'custom merge backend' '
 	rm -f $o $a $b
 '
 
+test_expect_success 'up-to-date merge without common ancestor' '
+	test_create_repo repo1 &&
+	test_create_repo repo2 &&
+	test_tick &&
+	(
+		cd repo1 &&
+		>a &&
+		git add a &&
+		git commit -m initial
+	) &&
+	test_tick &&
+	(
+		cd repo2 &&
+		git commit --allow-empty -m initial
+	) &&
+	test_tick &&
+	(
+		cd repo1 &&
+		git pull ../repo2 master
+	)
+'
+
 test_done
diff --git a/t/t6040-tracking-info.sh b/t/t6040-tracking-info.sh
index aac212e936..ba9060190d 100755
--- a/t/t6040-tracking-info.sh
+++ b/t/t6040-tracking-info.sh
@@ -53,7 +53,7 @@ test_expect_success 'checkout' '
 	(
 		cd test && git checkout b1
 	) >actual &&
-	grep -e "have 1 and 1 different" actual
+	grep "have 1 and 1 different" actual
 '
 
 test_expect_success 'status' '
@@ -63,7 +63,7 @@ test_expect_success 'status' '
 		# reports nothing to commit
 		test_must_fail git status
 	) >actual &&
-	grep -e "have 1 and 1 different" actual
+	grep "have 1 and 1 different" actual
 '
 
 
diff --git a/t/t7002-grep.sh b/t/t7002-grep.sh
index 5e359cb561..18fe6f2d57 100755
--- a/t/t7002-grep.sh
+++ b/t/t7002-grep.sh
@@ -109,7 +109,7 @@ do
 	'
 
 	test_expect_success "grep -c $L (no /dev/null)" '
-		! git grep -c test $H | grep -q /dev/null
+		! git grep -c test $H | grep /dev/null
         '
 
 done
diff --git a/t/t7201-co.sh b/t/t7201-co.sh
index 37d65fb1ed..fdd362b029 100755
--- a/t/t7201-co.sh
+++ b/t/t7201-co.sh
@@ -373,7 +373,7 @@ test_expect_success \
     'checkout with --track, but without -b, fails with too short tracked name' '
     test_must_fail git checkout --track renamer'
 
-test_expect_success 'checkout an unmerged path should fail' '
+setup_conflicting_index () {
 	rm -f .git/index &&
 	O=$(echo original | git hash-object -w --stdin) &&
 	A=$(echo ourside | git hash-object -w --stdin) &&
@@ -384,7 +384,11 @@ test_expect_success 'checkout an unmerged path should fail' '
 		echo "100644 $A 2	file" &&
 		echo "100644 $B 3	file" &&
 		echo "100644 $A 0	filf"
-	) | git update-index --index-info &&
+	) | git update-index --index-info
+}
+
+test_expect_success 'checkout an unmerged path should fail' '
+	setup_conflicting_index &&
 	echo "none of the above" >sample &&
 	cat sample >fild &&
 	cat sample >file &&
@@ -395,6 +399,121 @@ test_expect_success 'checkout an unmerged path should fail' '
 	test_cmp sample file
 '
 
+test_expect_success 'checkout with an unmerged path can be ignored' '
+	setup_conflicting_index &&
+	echo "none of the above" >sample &&
+	echo ourside >expect &&
+	cat sample >fild &&
+	cat sample >file &&
+	cat sample >filf &&
+	git checkout -f fild file filf &&
+	test_cmp expect fild &&
+	test_cmp expect filf &&
+	test_cmp sample file
+'
+
+test_expect_success 'checkout unmerged stage' '
+	setup_conflicting_index &&
+	echo "none of the above" >sample &&
+	echo ourside >expect &&
+	cat sample >fild &&
+	cat sample >file &&
+	cat sample >filf &&
+	git checkout --ours . &&
+	test_cmp expect fild &&
+	test_cmp expect filf &&
+	test_cmp expect file &&
+	git checkout --theirs file &&
+	test ztheirside = "z$(cat file)"
+'
+
+test_expect_success 'checkout with --merge' '
+	setup_conflicting_index &&
+	echo "none of the above" >sample &&
+	echo ourside >expect &&
+	cat sample >fild &&
+	cat sample >file &&
+	cat sample >filf &&
+	git checkout -m -- fild file filf &&
+	(
+		echo "<<<<<<< ours"
+		echo ourside
+		echo "======="
+		echo theirside
+		echo ">>>>>>> theirs"
+	) >merged &&
+	test_cmp expect fild &&
+	test_cmp expect filf &&
+	test_cmp merged file
+'
+
+test_expect_success 'checkout with --merge, in diff3 -m style' '
+	git config merge.conflictstyle diff3 &&
+	setup_conflicting_index &&
+	echo "none of the above" >sample &&
+	echo ourside >expect &&
+	cat sample >fild &&
+	cat sample >file &&
+	cat sample >filf &&
+	git checkout -m -- fild file filf &&
+	(
+		echo "<<<<<<< ours"
+		echo ourside
+		echo "|||||||"
+		echo original
+		echo "======="
+		echo theirside
+		echo ">>>>>>> theirs"
+	) >merged &&
+	test_cmp expect fild &&
+	test_cmp expect filf &&
+	test_cmp merged file
+'
+
+test_expect_success 'checkout --conflict=merge, overriding config' '
+	git config merge.conflictstyle diff3 &&
+	setup_conflicting_index &&
+	echo "none of the above" >sample &&
+	echo ourside >expect &&
+	cat sample >fild &&
+	cat sample >file &&
+	cat sample >filf &&
+	git checkout --conflict=merge -- fild file filf &&
+	(
+		echo "<<<<<<< ours"
+		echo ourside
+		echo "======="
+		echo theirside
+		echo ">>>>>>> theirs"
+	) >merged &&
+	test_cmp expect fild &&
+	test_cmp expect filf &&
+	test_cmp merged file
+'
+
+test_expect_success 'checkout --conflict=diff3' '
+	git config --unset merge.conflictstyle
+	setup_conflicting_index &&
+	echo "none of the above" >sample &&
+	echo ourside >expect &&
+	cat sample >fild &&
+	cat sample >file &&
+	cat sample >filf &&
+	git checkout --conflict=diff3 -- fild file filf &&
+	(
+		echo "<<<<<<< ours"
+		echo ourside
+		echo "|||||||"
+		echo original
+		echo "======="
+		echo theirside
+		echo ">>>>>>> theirs"
+	) >merged &&
+	test_cmp expect fild &&
+	test_cmp expect filf &&
+	test_cmp merged file
+'
+
 test_expect_success 'failing checkout -b should not break working tree' '
 	git reset --hard master &&
 	git symbolic-ref HEAD refs/heads/master &&
diff --git a/t/t7403-submodule-sync.sh b/t/t7403-submodule-sync.sh
new file mode 100755
index 0000000000..7538756487
--- /dev/null
+++ b/t/t7403-submodule-sync.sh
@@ -0,0 +1,64 @@
+#!/bin/sh
+#
+# Copyright (c) 2008 David Aguilar
+#
+
+test_description='git submodule sync
+
+These tests exercise the "git submodule sync" subcommand.
+'
+
+. ./test-lib.sh
+
+test_expect_success setup '
+	echo file > file &&
+	git add file &&
+	test_tick &&
+	git commit -m upstream
+	git clone . super &&
+	git clone super submodule &&
+	(cd super &&
+	 git submodule add ../submodule submodule &&
+	 test_tick &&
+	 git commit -m "submodule"
+	) &&
+	git clone super super-clone &&
+	(cd super-clone && git submodule update --init)
+'
+
+test_expect_success 'change submodule' '
+	(cd submodule &&
+	 echo second line >> file &&
+	 test_tick &&
+	 git commit -a -m "change submodule"
+	)
+'
+
+test_expect_success 'change submodule url' '
+	(cd super &&
+	 cd submodule &&
+	 git checkout master &&
+	 git pull
+	) &&
+	mv submodule moved-submodule &&
+	(cd super &&
+	 git config -f .gitmodules submodule.submodule.url ../moved-submodule
+	 test_tick &&
+	 git commit -a -m moved-submodule
+	)
+'
+
+test_expect_success '"git submodule sync" should update submodule URLs' '
+	(cd super-clone &&
+	 git pull &&
+	 git submodule sync
+	) &&
+	test -d "$(git config -f super-clone/submodule/.git/config \
+	                        remote.origin.url)" &&
+	(cd super-clone/submodule &&
+	 git checkout master &&
+	 git pull
+	)
+'
+
+test_done
diff --git a/t/t7502-status.sh b/t/t7502-status.sh
index d99530fa0a..3b75a9b009 100755
--- a/t/t7502-status.sh
+++ b/t/t7502-status.sh
@@ -50,6 +50,7 @@ cat > expect << \EOF
 #
 # Changed but not updated:
 #   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
 #
 #	modified:   dir1/modified
 #
@@ -80,6 +81,7 @@ cat >expect <<EOF
 #
 # Changed but not updated:
 #   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
 #
 #	modified:   dir1/modified
 #
@@ -108,6 +110,7 @@ cat >expect <<EOF
 #
 # Changed but not updated:
 #   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
 #
 #	modified:   dir1/modified
 #
@@ -142,6 +145,7 @@ cat >expect <<EOF
 #
 # Changed but not updated:
 #   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
 #
 #	modified:   dir1/modified
 #
@@ -178,6 +182,7 @@ cat > expect << \EOF
 #
 # Changed but not updated:
 #   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
 #
 #	modified:   modified
 #
@@ -208,6 +213,7 @@ cat > expect << \EOF
 #
 # Changed but not updated:
 #   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
 #
 #	modified:   dir1/modified
 #
@@ -271,6 +277,7 @@ cat >expect <<EOF
 #
 # Changed but not updated:
 #   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
 #
 #	modified:   dir1/modified
 #
@@ -301,6 +308,7 @@ cat >expect <<EOF
 #
 # Changed but not updated:
 #   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
 #
 #	modified:   dir1/modified
 #
@@ -330,6 +338,7 @@ cat >expect <<EOF
 # On branch master
 # Changed but not updated:
 #   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
 #
 #	modified:   dir1/modified
 #
@@ -361,6 +370,7 @@ cat >expect <<EOF
 #
 # Changed but not updated:
 #   (use "git add <file>..." to update what will be committed)
+#   (use "git checkout -- <file>..." to discard changes in working directory)
 #
 #	modified:   dir1/modified
 #
diff --git a/t/t7600-merge.sh b/t/t7600-merge.sh
index 9516f541e9..7313ac278c 100755
--- a/t/t7600-merge.sh
+++ b/t/t7600-merge.sh
@@ -511,4 +511,13 @@ test_expect_success 'in-index merge' '
 
 test_debug 'gitk --all'
 
+test_expect_success 'refresh the index before merging' '
+	git reset --hard c1 &&
+	sleep 1 &&
+	touch file &&
+	git merge c3
+'
+
+test_debug 'gitk --all'
+
 test_done
diff --git a/t/t7603-merge-reduce-heads.sh b/t/t7603-merge-reduce-heads.sh
index b47b7b9757..7e17eb490d 100755
--- a/t/t7603-merge-reduce-heads.sh
+++ b/t/t7603-merge-reduce-heads.sh
@@ -60,4 +60,57 @@ test_expect_success 'merge c1 with c2, c3, c4, c5' '
 	test -f c5.c
 '
 
+test_expect_success 'setup' '
+	for i in A B C D E
+	do
+		echo $i > $i.c &&
+		git add $i.c &&
+		git commit -m $i &&
+		git tag $i
+	done &&
+	git reset --hard A &&
+	for i in F G H I
+	do
+		echo $i > $i.c &&
+		git add $i.c &&
+		git commit -m $i &&
+		git tag $i
+	done
+'
+
+test_expect_success 'merge E and I' '
+	git reset --hard A &&
+	git merge E I
+'
+
+test_expect_success 'verify merge result' '
+	test $(git rev-parse HEAD^1) = $(git rev-parse E) &&
+	test $(git rev-parse HEAD^2) = $(git rev-parse I)
+'
+
+test_expect_success 'add conflicts' '
+	git reset --hard E &&
+	echo foo > file.c &&
+	git add file.c &&
+	git commit -m E2 &&
+	git tag E2 &&
+	git reset --hard I &&
+	echo bar >file.c &&
+	git add file.c &&
+	git commit -m I2 &&
+	git tag I2
+'
+
+test_expect_success 'merge E2 and I2, causing a conflict and resolve it' '
+	git reset --hard A &&
+	test_must_fail git merge E2 I2 &&
+	echo baz > file.c &&
+	git add file.c &&
+	git commit -m "resolve conflict"
+'
+
+test_expect_success 'verify merge result' '
+	test $(git rev-parse HEAD^1) = $(git rev-parse E2) &&
+	test $(git rev-parse HEAD^2) = $(git rev-parse I2)
+'
 test_done
diff --git a/t/t7701-repack-unpack-unreachable.sh b/t/t7701-repack-unpack-unreachable.sh
index 531dac060a..b48046e261 100755
--- a/t/t7701-repack-unpack-unreachable.sh
+++ b/t/t7701-repack-unpack-unreachable.sh
@@ -29,7 +29,7 @@ test_expect_success '-A option leaves unreachable objects unpacked' '
 	git repack -A -d -l &&
 	# verify objects are packed in repository
 	test 3 = $(git verify-pack -v -- .git/objects/pack/*.idx |
-		   grep -e "^$fsha1 " -e "^$csha1 " -e "^$tsha1 " |
+		   egrep "^($fsha1|$csha1|$tsha1) " |
 		   sort | uniq | wc -l) &&
 	git show $fsha1 &&
 	git show $csha1 &&
@@ -41,7 +41,7 @@ test_expect_success '-A option leaves unreachable objects unpacked' '
 	git repack -A -d -l &&
 	# verify objects are retained unpacked
 	test 0 = $(git verify-pack -v -- .git/objects/pack/*.idx |
-		   grep -e "^$fsha1 " -e "^$csha1 " -e "^$tsha1 " |
+		   egrep "^($fsha1|$csha1|$tsha1) " |
 		   sort | uniq | wc -l) &&
 	git show $fsha1 &&
 	git show $csha1 &&
diff --git a/t/t9128-git-svn-cmd-branch.sh b/t/t9128-git-svn-cmd-branch.sh
new file mode 100755
index 0000000000..47c4d4d938
--- /dev/null
+++ b/t/t9128-git-svn-cmd-branch.sh
@@ -0,0 +1,59 @@
+#!/bin/sh
+#
+# Copyright (c) 2008 Deskin Miller
+#
+
+test_description='git svn partial-rebuild tests'
+. ./lib-git-svn.sh
+
+test_expect_success 'initialize svnrepo' '
+	mkdir import &&
+	(
+		cd import &&
+		mkdir trunk branches tags &&
+		cd trunk &&
+		echo foo > foo &&
+		cd .. &&
+		svn import -m "import for git-svn" . "$svnrepo" >/dev/null &&
+		cd .. &&
+		rm -rf import &&
+		svn co "$svnrepo"/trunk trunk &&
+		cd trunk &&
+		echo bar >> foo &&
+		svn ci -m "updated trunk" &&
+		cd .. &&
+		rm -rf trunk
+	)
+'
+
+test_expect_success 'import into git' '
+	git svn init --stdlayout "$svnrepo" &&
+	git svn fetch &&
+	git checkout remotes/trunk
+'
+
+test_expect_success 'git svn branch tests' '
+	git svn branch a &&
+	base=$(git rev-parse HEAD:) &&
+	test $base = $(git rev-parse remotes/a:) &&
+	git svn branch -m "created branch b blah" b &&
+	test $base = $(git rev-parse remotes/b:) &&
+	test_must_fail git branch -m "no branchname" &&
+	git svn branch -n c &&
+	test_must_fail git rev-parse remotes/c &&
+	test_must_fail git svn branch a &&
+	git svn branch -t tag1 &&
+	test $base = $(git rev-parse remotes/tags/tag1:) &&
+	git svn branch --tag tag2 &&
+	test $base = $(git rev-parse remotes/tags/tag2:) &&
+	git svn tag tag3 &&
+	test $base = $(git rev-parse remotes/tags/tag3:) &&
+	git svn tag -m "created tag4 foo" tag4 &&
+	test $base = $(git rev-parse remotes/tags/tag4:) &&
+	test_must_fail git svn tag -m "no tagname" &&
+	git svn tag -n tag5 &&
+	test_must_fail git rev-parse remotes/tags/tag5 &&
+	test_must_fail git svn tag tag1
+'
+
+test_done
diff --git a/t/t9500-gitweb-standalone-no-errors.sh b/t/t9500-gitweb-standalone-no-errors.sh
index 46ba19be7d..64c4cce58b 100755
--- a/t/t9500-gitweb-standalone-no-errors.sh
+++ b/t/t9500-gitweb-standalone-no-errors.sh
@@ -56,7 +56,7 @@ gitweb_run () {
 	rm -f gitweb.log &&
 	perl -- "$TEST_DIRECTORY/../gitweb/gitweb.perl" \
 		>/dev/null 2>gitweb.log &&
-	if grep -q -s "^[[]" gitweb.log >/dev/null; then false; else true; fi
+	if grep "^[[]" gitweb.log >/dev/null 2>&1; then false; else true; fi
 
 	# gitweb.log is left for debugging
 }
@@ -502,6 +502,55 @@ test_expect_success \
 	 gitweb_run "p=.git;a=history;f=deleted_file"'
 test_debug 'cat gitweb.log'
 
+# ----------------------------------------------------------------------
+# path_info links
+test_expect_success \
+	'path_info: project' \
+	'gitweb_run "" "/.git"'
+test_debug 'cat gitweb.log'
+
+test_expect_success \
+	'path_info: project/branch' \
+	'gitweb_run "" "/.git/b"'
+test_debug 'cat gitweb.log'
+
+test_expect_success \
+	'path_info: project/branch:file' \
+	'gitweb_run "" "/.git/master:file"'
+test_debug 'cat gitweb.log'
+
+test_expect_success \
+	'path_info: project/branch:dir/' \
+	'gitweb_run "" "/.git/master:foo/"'
+test_debug 'cat gitweb.log'
+
+test_expect_success \
+	'path_info: project/branch:file (non-existent)' \
+	'gitweb_run "" "/.git/master:non-existent"'
+test_debug 'cat gitweb.log'
+
+test_expect_success \
+	'path_info: project/branch:dir/ (non-existent)' \
+	'gitweb_run "" "/.git/master:non-existent/"'
+test_debug 'cat gitweb.log'
+
+
+test_expect_success \
+	'path_info: project/branch:/file' \
+	'gitweb_run "" "/.git/master:/file"'
+test_debug 'cat gitweb.log'
+
+test_expect_success \
+	'path_info: project/:/file (implicit HEAD)' \
+	'gitweb_run "" "/.git/:/file"'
+test_debug 'cat gitweb.log'
+
+test_expect_success \
+	'path_info: project/:/ (implicit HEAD, top tree)' \
+	'gitweb_run "" "/.git/:/"'
+test_debug 'cat gitweb.log'
+
+
 # ----------------------------------------------------------------------
 # feed generation
 
diff --git a/test-sha1.c b/test-sha1.c
index 78d7e983a7..9b98d07c78 100644
--- a/test-sha1.c
+++ b/test-sha1.c
@@ -2,7 +2,7 @@
 
 int main(int ac, char **av)
 {
-	SHA_CTX ctx;
+	git_SHA_CTX ctx;
 	unsigned char sha1[20];
 	unsigned bufsz = 8192;
 	char *buffer;
@@ -20,7 +20,7 @@ int main(int ac, char **av)
 			die("OOPS");
 	}
 
-	SHA1_Init(&ctx);
+	git_SHA1_Init(&ctx);
 
 	while (1) {
 		ssize_t sz, this_sz;
@@ -39,9 +39,9 @@ int main(int ac, char **av)
 		}
 		if (this_sz == 0)
 			break;
-		SHA1_Update(&ctx, buffer, this_sz);
+		git_SHA1_Update(&ctx, buffer, this_sz);
 	}
-	SHA1_Final(sha1, &ctx);
+	git_SHA1_Final(sha1, &ctx);
 	puts(sha1_to_hex(sha1));
 	exit(0);
 }
diff --git a/transport.c b/transport.c
index 71433d9997..5110c56c4e 100644
--- a/transport.c
+++ b/transport.c
@@ -619,7 +619,7 @@ static struct ref *get_refs_via_connect(struct transport *transport)
 	struct ref *refs;
 
 	connect_setup(transport);
-	get_remote_heads(data->fd[0], &refs, 0, NULL, 0);
+	get_remote_heads(data->fd[0], &refs, 0, NULL, 0, NULL);
 
 	return refs;
 }
@@ -643,8 +643,8 @@ static int fetch_refs_via_pack(struct transport *transport,
 	args.use_thin_pack = data->thin;
 	args.include_tag = data->followtags;
 	args.verbose = (transport->verbose > 0);
-	args.quiet = args.no_progress = (transport->verbose < 0);
-	args.no_progress = !isatty(1);
+	args.quiet = (transport->verbose < 0);
+	args.no_progress = args.quiet || !isatty(1);
 	args.depth = data->depth;
 
 	for (i = 0; i < nr_heads; i++)
@@ -652,7 +652,7 @@ static int fetch_refs_via_pack(struct transport *transport,
 
 	if (!data->conn) {
 		connect_setup(transport);
-		get_remote_heads(data->fd[0], &refs_tmp, 0, NULL, 0);
+		get_remote_heads(data->fd[0], &refs_tmp, 0, NULL, 0, NULL);
 	}
 
 	refs = fetch_pack(&args, data->fd, data->conn,
diff --git a/usage.c b/usage.c
index a5fc4ec5fa..24f5fc00c2 100644
--- a/usage.c
+++ b/usage.c
@@ -41,27 +41,11 @@ static void (*die_routine)(const char *err, va_list params) NORETURN = die_built
 static void (*error_routine)(const char *err, va_list params) = error_builtin;
 static void (*warn_routine)(const char *err, va_list params) = warn_builtin;
 
-void set_usage_routine(void (*routine)(const char *err) NORETURN)
-{
-	usage_routine = routine;
-}
-
 void set_die_routine(void (*routine)(const char *err, va_list params) NORETURN)
 {
 	die_routine = routine;
 }
 
-void set_error_routine(void (*routine)(const char *err, va_list params))
-{
-	error_routine = routine;
-}
-
-void set_warn_routine(void (*routine)(const char *warn, va_list params))
-{
-	warn_routine = routine;
-}
-
-
 void usage(const char *err)
 {
 	usage_routine(err);
diff --git a/wt-status.c b/wt-status.c
index 889e50f89f..7cf890f243 100644
--- a/wt-status.c
+++ b/wt-status.c
@@ -22,12 +22,6 @@ static char wt_status_colors[][COLOR_MAXLEN] = {
 	"\033[31m", /* WT_STATUS_NOBRANCH: red */
 };
 
-static const char use_add_msg[] =
-"use \"git add <file>...\" to update what will be committed";
-static const char use_add_rm_msg[] =
-"use \"git add/rm <file>...\" to update what will be committed";
-static const char use_add_to_include_msg[] =
-"use \"git add <file>...\" to include in what will be committed";
 enum untracked_status_type show_untracked_files = SHOW_NORMAL_UNTRACKED_FILES;
 
 static int parse_status_slot(const char *var, int offset)
@@ -76,12 +70,24 @@ static void wt_status_print_cached_header(struct wt_status *s)
 	color_fprintf_ln(s->fp, c, "#");
 }
 
-static void wt_status_print_header(struct wt_status *s,
-				   const char *main, const char *sub)
+static void wt_status_print_dirty_header(struct wt_status *s,
+					 int has_deleted)
 {
 	const char *c = color(WT_STATUS_HEADER);
-	color_fprintf_ln(s->fp, c, "# %s:", main);
-	color_fprintf_ln(s->fp, c, "#   (%s)", sub);
+	color_fprintf_ln(s->fp, c, "# Changed but not updated:");
+	if (!has_deleted)
+		color_fprintf_ln(s->fp, c, "#   (use \"git add <file>...\" to update what will be committed)");
+	else
+		color_fprintf_ln(s->fp, c, "#   (use \"git add/rm <file>...\" to update what will be committed)");
+	color_fprintf_ln(s->fp, c, "#   (use \"git checkout -- <file>...\" to discard changes in working directory)");
+	color_fprintf_ln(s->fp, c, "#");
+}
+
+static void wt_status_print_untracked_header(struct wt_status *s)
+{
+	const char *c = color(WT_STATUS_HEADER);
+	color_fprintf_ln(s->fp, c, "# Untracked files:");
+	color_fprintf_ln(s->fp, c, "#   (use \"git add <file>...\" to include in what will be committed)");
 	color_fprintf_ln(s->fp, c, "#");
 }
 
@@ -166,14 +172,14 @@ static void wt_status_print_changed_cb(struct diff_queue_struct *q,
 	struct wt_status *s = data;
 	int i;
 	if (q->nr) {
-		const char *msg = use_add_msg;
+		int has_deleted = 0;
 		s->workdir_dirty = 1;
 		for (i = 0; i < q->nr; i++)
 			if (q->queue[i]->status == DIFF_STATUS_DELETED) {
-				msg = use_add_rm_msg;
+				has_deleted = 1;
 				break;
 			}
-		wt_status_print_header(s, "Changed but not updated", msg);
+		wt_status_print_dirty_header(s, has_deleted);
 	}
 	for (i = 0; i < q->nr; i++)
 		wt_status_print_filepair(s, WT_STATUS_CHANGED, q->queue[i]);
@@ -291,8 +297,7 @@ static void wt_status_print_untracked(struct wt_status *s)
 		}
 		if (!shown_header) {
 			s->workdir_untracked = 1;
-			wt_status_print_header(s, "Untracked files",
-					       use_add_to_include_msg);
+			wt_status_print_untracked_header(s);
 			shown_header = 1;
 		}
 		color_fprintf(s->fp, color(WT_STATUS_HEADER), "#\t");
diff --git a/xdiff-interface.c b/xdiff-interface.c
index 944ad9887f..f3f6db3297 100644
--- a/xdiff-interface.c
+++ b/xdiff-interface.c
@@ -191,34 +191,47 @@ struct ff_regs {
 static long ff_regexp(const char *line, long len,
 		char *buffer, long buffer_size, void *priv)
 {
-	char *line_buffer = xstrndup(line, len); /* make NUL terminated */
+	char *line_buffer;
 	struct ff_regs *regs = priv;
 	regmatch_t pmatch[2];
-	int result = 0, i;
+	int i;
+	int result = -1;
+
+	/* Exclude terminating newline (and cr) from matching */
+	if (len > 0 && line[len-1] == '\n') {
+		if (len > 1 && line[len-2] == '\r')
+			len -= 2;
+		else
+			len--;
+	}
+
+	line_buffer = xstrndup(line, len); /* make NUL terminated */
 
 	for (i = 0; i < regs->nr; i++) {
 		struct ff_reg *reg = regs->array + i;
-		if (reg->negate ^ !!regexec(&reg->re,
-					line_buffer, 2, pmatch, 0)) {
-			free(line_buffer);
-			return -1;
+		if (!regexec(&reg->re, line_buffer, 2, pmatch, 0)) {
+			if (reg->negate)
+				goto fail;
+			break;
 		}
 	}
+	if (regs->nr <= i)
+		goto fail;
 	i = pmatch[1].rm_so >= 0 ? 1 : 0;
 	line += pmatch[i].rm_so;
 	result = pmatch[i].rm_eo - pmatch[i].rm_so;
 	if (result > buffer_size)
 		result = buffer_size;
 	else
-		while (result > 0 && (isspace(line[result - 1]) ||
-					line[result - 1] == '\n'))
+		while (result > 0 && (isspace(line[result - 1])))
 			result--;
 	memcpy(buffer, line, result);
+ fail:
 	free(line_buffer);
 	return result;
 }
 
-void xdiff_set_find_func(xdemitconf_t *xecfg, const char *value)
+void xdiff_set_find_func(xdemitconf_t *xecfg, const char *value, int cflags)
 {
 	int i;
 	struct ff_regs *regs;
@@ -243,9 +256,29 @@ void xdiff_set_find_func(xdemitconf_t *xecfg, const char *value)
 			expression = buffer = xstrndup(value, ep - value);
 		else
 			expression = value;
-		if (regcomp(&reg->re, expression, 0))
+		if (regcomp(&reg->re, expression, cflags))
 			die("Invalid regexp to look for hunk header: %s", expression);
 		free(buffer);
 		value = ep + 1;
 	}
 }
+
+int git_xmerge_style = -1;
+
+int git_xmerge_config(const char *var, const char *value, void *cb)
+{
+	if (!strcasecmp(var, "merge.conflictstyle")) {
+		if (!value)
+			die("'%s' is not a boolean", var);
+		if (!strcmp(value, "diff3"))
+			git_xmerge_style = XDL_MERGE_DIFF3;
+		else if (!strcmp(value, "merge"))
+			git_xmerge_style = 0;
+		else
+			die("unknown style '%s' given for '%s'",
+			    value, var);
+		return 0;
+	}
+	return git_default_config(var, value, cb);
+}
+
diff --git a/xdiff-interface.h b/xdiff-interface.h
index 558492ba38..eaf9cd3498 100644
--- a/xdiff-interface.h
+++ b/xdiff-interface.h
@@ -16,6 +16,8 @@ int parse_hunk_header(char *line, int len,
 int read_mmfile(mmfile_t *ptr, const char *filename);
 int buffer_is_binary(const char *ptr, unsigned long size);
 
-extern void xdiff_set_find_func(xdemitconf_t *xecfg, const char *line);
+extern void xdiff_set_find_func(xdemitconf_t *xecfg, const char *line, int cflags);
+extern int git_xmerge_config(const char *var, const char *value, void *cb);
+extern int git_xmerge_style;
 
 #endif
diff --git a/xdiff/xdiff.h b/xdiff/xdiff.h
index 413082e1fd..deebe02cd3 100644
--- a/xdiff/xdiff.h
+++ b/xdiff/xdiff.h
@@ -50,10 +50,16 @@ extern "C" {
 #define XDL_BDOP_CPY 2
 #define XDL_BDOP_INSB 3
 
+/* merge simplification levels */
 #define XDL_MERGE_MINIMAL 0
 #define XDL_MERGE_EAGER 1
 #define XDL_MERGE_ZEALOUS 2
 #define XDL_MERGE_ZEALOUS_ALNUM 3
+#define XDL_MERGE_LEVEL_MASK 0x0f
+
+/* merge output styles */
+#define XDL_MERGE_DIFF3 0x8000
+#define XDL_MERGE_STYLE_MASK 0x8000
 
 typedef struct s_mmfile {
 	char *ptr;
diff --git a/xdiff/xmerge.c b/xdiff/xmerge.c
index 82b3573e7a..d9737f04c2 100644
--- a/xdiff/xmerge.c
+++ b/xdiff/xmerge.c
@@ -30,17 +30,32 @@ typedef struct s_xdmerge {
 	 * 2 = no conflict, take second.
 	 */
 	int mode;
+	/*
+	 * These point at the respective postimages.  E.g. <i1,chg1> is
+	 * how side #1 wants to change the common ancestor; if there is no
+	 * overlap, lines before i1 in the postimage of side #1 appear
+	 * in the merge result as a region touched by neither side.
+	 */
 	long i1, i2;
 	long chg1, chg2;
+	/*
+	 * These point at the preimage; of course there is just one
+	 * preimage, that is from the shared common ancestor.
+	 */
+	long i0;
+	long chg0;
 } xdmerge_t;
 
 static int xdl_append_merge(xdmerge_t **merge, int mode,
-		long i1, long chg1, long i2, long chg2)
+			    long i0, long chg0,
+			    long i1, long chg1,
+			    long i2, long chg2)
 {
 	xdmerge_t *m = *merge;
 	if (m && (i1 <= m->i1 + m->chg1 || i2 <= m->i2 + m->chg2)) {
 		if (mode != m->mode)
 			m->mode = 0;
+		m->chg0 = i0 + chg0 - m->i0;
 		m->chg1 = i1 + chg1 - m->i1;
 		m->chg2 = i2 + chg2 - m->i2;
 	} else {
@@ -49,6 +64,8 @@ static int xdl_append_merge(xdmerge_t **merge, int mode,
 			return -1;
 		m->next = NULL;
 		m->mode = mode;
+		m->i0 = i0;
+		m->chg0 = chg0;
 		m->i1 = i1;
 		m->chg1 = chg1;
 		m->i2 = i2;
@@ -91,11 +108,13 @@ static int xdl_merge_cmp_lines(xdfenv_t *xe1, int i1, xdfenv_t *xe2, int i2,
 	return 0;
 }
 
-static int xdl_recs_copy(xdfenv_t *xe, int i, int count, int add_nl, char *dest)
+static int xdl_recs_copy_0(int use_orig, xdfenv_t *xe, int i, int count, int add_nl, char *dest)
 {
-	xrecord_t **recs = xe->xdf2.recs + i;
+	xrecord_t **recs;
 	int size = 0;
 
+	recs = (use_orig ? xe->xdf1.recs : xe->xdf2.recs) + i;
+
 	if (count < 1)
 		return 0;
 
@@ -113,65 +132,109 @@ static int xdl_recs_copy(xdfenv_t *xe, int i, int count, int add_nl, char *dest)
 	return size;
 }
 
-static int xdl_fill_merge_buffer(xdfenv_t *xe1, const char *name1,
-		xdfenv_t *xe2, const char *name2, xdmerge_t *m, char *dest)
+static int xdl_recs_copy(xdfenv_t *xe, int i, int count, int add_nl, char *dest)
+{
+	return xdl_recs_copy_0(0, xe, i, count, add_nl, dest);
+}
+
+static int xdl_orig_copy(xdfenv_t *xe, int i, int count, int add_nl, char *dest)
+{
+	return xdl_recs_copy_0(1, xe, i, count, add_nl, dest);
+}
+
+static int fill_conflict_hunk(xdfenv_t *xe1, const char *name1,
+			      xdfenv_t *xe2, const char *name2,
+			      int size, int i, int style,
+			      xdmerge_t *m, char *dest)
 {
 	const int marker_size = 7;
 	int marker1_size = (name1 ? strlen(name1) + 1 : 0);
 	int marker2_size = (name2 ? strlen(name2) + 1 : 0);
-	int conflict_marker_size = 3 * (marker_size + 1)
-		+ marker1_size + marker2_size;
-	int size, i1, j;
+	int j;
 
-	for (size = i1 = 0; m; m = m->next) {
-		if (m->mode == 0) {
-			size += xdl_recs_copy(xe1, i1, m->i1 - i1, 0,
-					dest ? dest + size : NULL);
-			if (dest) {
-				for (j = 0; j < marker_size; j++)
-					dest[size++] = '<';
-				if (marker1_size) {
-					dest[size] = ' ';
-					memcpy(dest + size + 1, name1,
-							marker1_size - 1);
-					size += marker1_size;
-				}
-				dest[size++] = '\n';
-			} else
-				size += conflict_marker_size;
-			size += xdl_recs_copy(xe1, m->i1, m->chg1, 1,
-					dest ? dest + size : NULL);
-			if (dest) {
-				for (j = 0; j < marker_size; j++)
-					dest[size++] = '=';
-				dest[size++] = '\n';
-			}
-			size += xdl_recs_copy(xe2, m->i2, m->chg2, 1,
-					dest ? dest + size : NULL);
-			if (dest) {
-				for (j = 0; j < marker_size; j++)
-					dest[size++] = '>';
-				if (marker2_size) {
-					dest[size] = ' ';
-					memcpy(dest + size + 1, name2,
-							marker2_size - 1);
-					size += marker2_size;
-				}
-				dest[size++] = '\n';
-			}
-		} else if (m->mode == 1)
-			size += xdl_recs_copy(xe1, i1, m->i1 + m->chg1 - i1, 0,
-					dest ? dest + size : NULL);
+	/* Before conflicting part */
+	size += xdl_recs_copy(xe1, i, m->i1 - i, 0,
+			      dest ? dest + size : NULL);
+
+	if (!dest) {
+		size += marker_size + 1 + marker1_size;
+	} else {
+		for (j = 0; j < marker_size; j++)
+			dest[size++] = '<';
+		if (marker1_size) {
+			dest[size] = ' ';
+			memcpy(dest + size + 1, name1, marker1_size - 1);
+			size += marker1_size;
+		}
+		dest[size++] = '\n';
+	}
+
+	/* Postimage from side #1 */
+	size += xdl_recs_copy(xe1, m->i1, m->chg1, 1,
+			      dest ? dest + size : NULL);
+
+	if (style == XDL_MERGE_DIFF3) {
+		/* Shared preimage */
+		if (!dest) {
+			size += marker_size + 1;
+		} else {
+			for (j = 0; j < marker_size; j++)
+				dest[size++] = '|';
+			dest[size++] = '\n';
+		}
+		size += xdl_orig_copy(xe1, m->i0, m->chg0, 1,
+				      dest ? dest + size : NULL);
+	}
+
+	if (!dest) {
+		size += marker_size + 1;
+	} else {
+		for (j = 0; j < marker_size; j++)
+			dest[size++] = '=';
+		dest[size++] = '\n';
+	}
+
+	/* Postimage from side #2 */
+	size += xdl_recs_copy(xe2, m->i2, m->chg2, 1,
+			      dest ? dest + size : NULL);
+	if (!dest) {
+		size += marker_size + 1 + marker2_size;
+	} else {
+		for (j = 0; j < marker_size; j++)
+			dest[size++] = '>';
+		if (marker2_size) {
+			dest[size] = ' ';
+			memcpy(dest + size + 1, name2, marker2_size - 1);
+			size += marker2_size;
+		}
+		dest[size++] = '\n';
+	}
+	return size;
+}
+
+static int xdl_fill_merge_buffer(xdfenv_t *xe1, const char *name1,
+				 xdfenv_t *xe2, const char *name2,
+				 xdmerge_t *m, char *dest, int style)
+{
+	int size, i;
+
+	for (size = i = 0; m; m = m->next) {
+		if (m->mode == 0)
+			size = fill_conflict_hunk(xe1, name1, xe2, name2,
+						  size, i, style, m, dest);
+		else if (m->mode == 1)
+			size += xdl_recs_copy(xe1, i, m->i1 + m->chg1 - i, 0,
+					      dest ? dest + size : NULL);
 		else if (m->mode == 2)
-			size += xdl_recs_copy(xe2, m->i2 - m->i1 + i1,
-					m->i1 + m->chg2 - i1, 0,
-					dest ? dest + size : NULL);
+			size += xdl_recs_copy(xe2, m->i2 - m->i1 + i,
+					      m->i1 + m->chg2 - i, 0,
+					      dest ? dest + size : NULL);
 		else
 			continue;
-		i1 = m->i1 + m->chg1;
+		i = m->i1 + m->chg1;
 	}
-	size += xdl_recs_copy(xe1, i1, xe1->xdf2.nrec - i1, 0,
-			dest ? dest + size : NULL);
+	size += xdl_recs_copy(xe1, i, xe1->xdf2.nrec - i, 0,
+			      dest ? dest + size : NULL);
 	return size;
 }
 
@@ -323,9 +386,20 @@ static int xdl_simplify_non_conflicts(xdfenv_t *xe1, xdmerge_t *m,
  */
 static int xdl_do_merge(xdfenv_t *xe1, xdchange_t *xscr1, const char *name1,
 		xdfenv_t *xe2, xdchange_t *xscr2, const char *name2,
-		int level, xpparam_t const *xpp, mmbuffer_t *result) {
+		int flags, xpparam_t const *xpp, mmbuffer_t *result) {
 	xdmerge_t *changes, *c;
-	int i1, i2, chg1, chg2;
+	int i0, i1, i2, chg0, chg1, chg2;
+	int level = flags & XDL_MERGE_LEVEL_MASK;
+	int style = flags & XDL_MERGE_STYLE_MASK;
+
+	if (style == XDL_MERGE_DIFF3) {
+		/*
+		 * "diff3 -m" output does not make sense for anything
+		 * more aggressive than XDL_MERGE_EAGER.
+		 */
+		if (XDL_MERGE_EAGER < level)
+			level = XDL_MERGE_EAGER;
+	}
 
 	c = changes = NULL;
 
@@ -333,11 +407,14 @@ static int xdl_do_merge(xdfenv_t *xe1, xdchange_t *xscr1, const char *name1,
 		if (!changes)
 			changes = c;
 		if (xscr1->i1 + xscr1->chg1 < xscr2->i1) {
+			i0 = xscr1->i1;
 			i1 = xscr1->i2;
 			i2 = xscr2->i2 - xscr2->i1 + xscr1->i1;
+			chg0 = xscr1->chg1;
 			chg1 = xscr1->chg2;
 			chg2 = xscr1->chg1;
-			if (xdl_append_merge(&c, 1, i1, chg1, i2, chg2)) {
+			if (xdl_append_merge(&c, 1,
+					     i0, chg0, i1, chg1, i2, chg2)) {
 				xdl_cleanup_merge(changes);
 				return -1;
 			}
@@ -345,18 +422,21 @@ static int xdl_do_merge(xdfenv_t *xe1, xdchange_t *xscr1, const char *name1,
 			continue;
 		}
 		if (xscr2->i1 + xscr2->chg1 < xscr1->i1) {
+			i0 = xscr2->i1;
 			i1 = xscr1->i2 - xscr1->i1 + xscr2->i1;
 			i2 = xscr2->i2;
+			chg0 = xscr2->chg1;
 			chg1 = xscr2->chg1;
 			chg2 = xscr2->chg2;
-			if (xdl_append_merge(&c, 2, i1, chg1, i2, chg2)) {
+			if (xdl_append_merge(&c, 2,
+					     i0, chg0, i1, chg1, i2, chg2)) {
 				xdl_cleanup_merge(changes);
 				return -1;
 			}
 			xscr2 = xscr2->next;
 			continue;
 		}
-		if (level < 1 || xscr1->i1 != xscr2->i1 ||
+		if (level == XDL_MERGE_MINIMAL || xscr1->i1 != xscr2->i1 ||
 				xscr1->chg1 != xscr2->chg1 ||
 				xscr1->chg2 != xscr2->chg2 ||
 				xdl_merge_cmp_lines(xe1, xscr1->i2,
@@ -366,19 +446,25 @@ static int xdl_do_merge(xdfenv_t *xe1, xdchange_t *xscr1, const char *name1,
 			int off = xscr1->i1 - xscr2->i1;
 			int ffo = off + xscr1->chg1 - xscr2->chg1;
 
+			i0 = xscr1->i1;
 			i1 = xscr1->i2;
 			i2 = xscr2->i2;
-			if (off > 0)
+			if (off > 0) {
+				i0 -= off;
 				i1 -= off;
+			}
 			else
 				i2 += off;
+			chg0 = xscr1->i1 + xscr1->chg1 - i0;
 			chg1 = xscr1->i2 + xscr1->chg2 - i1;
 			chg2 = xscr2->i2 + xscr2->chg2 - i2;
-			if (ffo > 0)
-				chg2 += ffo;
-			else
+			if (ffo < 0) {
+				chg0 -= ffo;
 				chg1 -= ffo;
-			if (xdl_append_merge(&c, 0, i1, chg1, i2, chg2)) {
+			} else
+				chg2 += ffo;
+			if (xdl_append_merge(&c, 0,
+					     i0, chg0, i1, chg1, i2, chg2)) {
 				xdl_cleanup_merge(changes);
 				return -1;
 			}
@@ -395,11 +481,14 @@ static int xdl_do_merge(xdfenv_t *xe1, xdchange_t *xscr1, const char *name1,
 	while (xscr1) {
 		if (!changes)
 			changes = c;
+		i0 = xscr1->i1;
 		i1 = xscr1->i2;
 		i2 = xscr1->i1 + xe2->xdf2.nrec - xe2->xdf1.nrec;
+		chg0 = xscr1->chg1;
 		chg1 = xscr1->chg2;
 		chg2 = xscr1->chg1;
-		if (xdl_append_merge(&c, 1, i1, chg1, i2, chg2)) {
+		if (xdl_append_merge(&c, 1,
+				     i0, chg0, i1, chg1, i2, chg2)) {
 			xdl_cleanup_merge(changes);
 			return -1;
 		}
@@ -408,11 +497,14 @@ static int xdl_do_merge(xdfenv_t *xe1, xdchange_t *xscr1, const char *name1,
 	while (xscr2) {
 		if (!changes)
 			changes = c;
+		i0 = xscr2->i1;
 		i1 = xscr2->i1 + xe1->xdf2.nrec - xe1->xdf1.nrec;
 		i2 = xscr2->i2;
+		chg0 = xscr2->chg1;
 		chg1 = xscr2->chg1;
 		chg2 = xscr2->chg2;
-		if (xdl_append_merge(&c, 2, i1, chg1, i2, chg2)) {
+		if (xdl_append_merge(&c, 2,
+				     i0, chg0, i1, chg1, i2, chg2)) {
 			xdl_cleanup_merge(changes);
 			return -1;
 		}
@@ -421,16 +513,17 @@ static int xdl_do_merge(xdfenv_t *xe1, xdchange_t *xscr1, const char *name1,
 	if (!changes)
 		changes = c;
 	/* refine conflicts */
-	if (level > 1 &&
+	if (XDL_MERGE_ZEALOUS <= level &&
 	    (xdl_refine_conflicts(xe1, xe2, changes, xpp) < 0 ||
-	     xdl_simplify_non_conflicts(xe1, changes, level > 2) < 0)) {
+	     xdl_simplify_non_conflicts(xe1, changes,
+					XDL_MERGE_ZEALOUS < level) < 0)) {
 		xdl_cleanup_merge(changes);
 		return -1;
 	}
 	/* output */
 	if (result) {
 		int size = xdl_fill_merge_buffer(xe1, name1, xe2, name2,
-			changes, NULL);
+			changes, NULL, style);
 		result->ptr = xdl_malloc(size);
 		if (!result->ptr) {
 			xdl_cleanup_merge(changes);
@@ -438,14 +531,14 @@ static int xdl_do_merge(xdfenv_t *xe1, xdchange_t *xscr1, const char *name1,
 		}
 		result->size = size;
 		xdl_fill_merge_buffer(xe1, name1, xe2, name2, changes,
-				result->ptr);
+				      result->ptr, style);
 	}
 	return xdl_cleanup_merge(changes);
 }
 
 int xdl_merge(mmfile_t *orig, mmfile_t *mf1, const char *name1,
 		mmfile_t *mf2, const char *name2,
-		xpparam_t const *xpp, int level, mmbuffer_t *result) {
+		xpparam_t const *xpp, int flags, mmbuffer_t *result) {
 	xdchange_t *xscr1, *xscr2;
 	xdfenv_t xe1, xe2;
 	int status;
@@ -482,7 +575,7 @@ int xdl_merge(mmfile_t *orig, mmfile_t *mf1, const char *name1,
 		} else {
 			status = xdl_do_merge(&xe1, xscr1, name1,
 					      &xe2, xscr2, name2,
-					      level, xpp, result);
+					      flags, xpp, result);
 		}
 		xdl_free_script(xscr1);
 		xdl_free_script(xscr2);